BioD PNPI Git Repos - alexxy/gromacs.git/commit - src/gromacs/gmxana/gmx

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	David van der Spoel <spoel@xray.bmc.uu.se>
	Thu, 1 Oct 2015 06:46:07 +0000 (08:46 +0200)
committer	Teemu Murtola <teemu.murtola@gmail.com>
	Fri, 2 Oct 2015 03:33:24 +0000 (06:33 +0300)
commit	7308cd36df5e7d29bf07cc953bbc433533cd218e
tree	3c42d8491f971f22e38ff16da7e13db5b0f1fa10	tree \| snapshot
parent	655d252f8222f2a7253dc303c78af6a91d34ed13	commit \| diff

Removed output_env_t, now using gmx_output_env_t * throughout.

This patch removes types/oenv.h, and with that one more entry
from typedefs.h. Also removed some useless externs in swapcoords.cpp
and did some space cleanups.

Change-Id: I9a5fa11bcd5f4dc880b41bac94a552cbcd634b91

124 files changed:

src/gromacs/commandline/pargs.cpp		diff \| blob \| history
src/gromacs/commandline/pargs.h		diff \| blob \| history
src/gromacs/commandline/tests/pargs.cpp		diff \| blob \| history
src/gromacs/correlationfunctions/autocorr.cpp		diff \| blob \| history
src/gromacs/correlationfunctions/autocorr.h		diff \| blob \| history
src/gromacs/gmxana/anadih.cpp		diff \| blob \| history
src/gromacs/gmxana/cmat.cpp		diff \| blob \| history
src/gromacs/gmxana/cmat.h		diff \| blob \| history
src/gromacs/gmxana/dlist.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_anadock.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_anaeig.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_analyze.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_bar.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_bundle.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_cluster.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_confrms.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_covar.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_current.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_density.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_densmap.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dielectric.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_do_dssp.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyecoupl.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_editconf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_eneconv.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_enemat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_energy.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_filter.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genpr.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_gyrate.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_h2order.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_helixorient.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_hydorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_lie.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_make_edi.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_make_ndx.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_mdmat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_mindist.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_mk_angndx.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_morph.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_msd.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmeig.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmtraj.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_order.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_pme_error.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_polystat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_potential.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_principal.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rama.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rms.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsdist.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rotacf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rotmat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_saltbr.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sans.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_saxs.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sham.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sigeps.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sorient.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_spatial.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_spol.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_traj.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjcat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjconv.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_tune_pme.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_vanhove.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wham.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_wheel.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_xpm2ps.cpp		diff \| blob \| history
src/gromacs/gmxana/gstat.h		diff \| blob \| history
src/gromacs/gmxana/nrama.cpp		diff \| blob \| history
src/gromacs/gmxana/nrama.h		diff \| blob \| history
src/gromacs/gmxana/sfactor.cpp		diff \| blob \| history
src/gromacs/gmxana/sfactor.h		diff \| blob \| history
src/gromacs/gmxpreprocess/genconf.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2gmx.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/readir.h		diff \| blob \| history
src/gromacs/gmxpreprocess/readpull.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/solvate.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/x2top.cpp		diff \| blob \| history
src/gromacs/imd/imd.cpp		diff \| blob \| history
src/gromacs/imd/imd.h		diff \| blob \| history
src/gromacs/legacyheaders/typedefs.h		diff \| blob \| history
src/gromacs/legacyheaders/types/oenv.h	[deleted file]	blob \| history
src/gromacs/mdlib/integrator.h		diff \| blob \| history
src/gromacs/mdlib/minimize.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.cpp		diff \| blob \| history
src/gromacs/mdlib/sim_util.h		diff \| blob \| history
src/gromacs/mdlib/tpi.cpp		diff \| blob \| history
src/gromacs/pulling/pull.cpp		diff \| blob \| history
src/gromacs/pulling/pull.h		diff \| blob \| history
src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/pulling/pull_rotation.h		diff \| blob \| history
src/gromacs/swap/swapcoords.cpp		diff \| blob \| history
src/gromacs/swap/swapcoords.h		diff \| blob \| history
src/gromacs/tools/check.cpp		diff \| blob \| history
src/gromacs/tools/compare.cpp		diff \| blob \| history
src/gromacs/tools/compare.h		diff \| blob \| history
src/gromacs/tools/convert_tpr.cpp		diff \| blob \| history
src/gromacs/tools/dump.cpp		diff \| blob \| history
src/programs/mdrun/md.cpp		diff \| blob \| history
src/programs/mdrun/mdrun.cpp		diff \| blob \| history
src/programs/mdrun/runner.cpp		diff \| blob \| history
src/programs/mdrun/runner.h		diff \| blob \| history
src/programs/view/manager.cpp		diff \| blob \| history
src/programs/view/manager.h		diff \| blob \| history
src/programs/view/view.cpp		diff \| blob \| history

Local GROMACS mirror with custom stuff

RSS Atom