BioD PNPI Git Repos - alexxy/gromacs.git/commit

biod.pnpi.spb.ru / alexxy / gromacs.git / commit

author	David van der Spoel <spoel@xray.bmc.uu.se>
	Fri, 13 Nov 2015 09:15:23 +0000 (10:15 +0100)
committer	Gerrit Code Review <gerrit@gerrit.gromacs.org>
	Fri, 13 Nov 2015 17:12:13 +0000 (18:12 +0100)
commit	625a764e7048503424ccd7e3c36ace7c60f69f5c
tree	98dcde7e957a6e2dc8d1a069f1a774e428551057	tree \| snapshot
parent	3d42ec45c971024c0b85497e1b9105cc5a6dd77a	commit \| diff

Replaced atom_id by int.

Change-Id: Id5d3937e3293bf9e4cb8b4d35b981a289e6001b1

144 files changed:

src/gromacs/domdec/domdec.cpp		diff \| blob \| history
src/gromacs/domdec/domdec_topology.cpp		diff \| blob \| history
src/gromacs/ewald/long-range-correction.cpp		diff \| blob \| history
src/gromacs/fileio/confio.cpp		diff \| blob \| history
src/gromacs/fileio/confio.h		diff \| blob \| history
src/gromacs/fileio/espio.cpp		diff \| blob \| history
src/gromacs/fileio/espio.h		diff \| blob \| history
src/gromacs/fileio/g96io.cpp		diff \| blob \| history
src/gromacs/fileio/g96io.h		diff \| blob \| history
src/gromacs/fileio/groio.cpp		diff \| blob \| history
src/gromacs/fileio/groio.h		diff \| blob \| history
src/gromacs/fileio/oenv.h		diff \| blob \| history
src/gromacs/fileio/pdbio.cpp		diff \| blob \| history
src/gromacs/fileio/pdbio.h		diff \| blob \| history
src/gromacs/fileio/tngio_for_tools.cpp		diff \| blob \| history
src/gromacs/fileio/tngio_for_tools.h		diff \| blob \| history
src/gromacs/fileio/trxio.cpp		diff \| blob \| history
src/gromacs/fileio/trxio.h		diff \| blob \| history
src/gromacs/gmxana/anadih.cpp		diff \| blob \| history
src/gromacs/gmxana/fitahx.cpp		diff \| blob \| history
src/gromacs/gmxana/fitahx.h		diff \| blob \| history
src/gromacs/gmxana/gmx_anaeig.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_angle.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_bundle.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_chi.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_cluster.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_clustsize.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_confrms.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_covar.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_current.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_density.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_densmap.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_densorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dipoles.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_disre.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_do_dssp.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dos.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyecoupl.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_dyndom.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_editconf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_filter.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genion.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_genpr.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_gyrate.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_h2order.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_hbond.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_helix.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_helixorient.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_hydorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_make_edi.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_make_ndx.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_mdmat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_mindist.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_morph.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_msd.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_nmens.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_order.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_potential.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_principal.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rms.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsdist.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rmsf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rotacf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_rotmat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sans.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_sorient.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_spatial.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_spol.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_tcaf.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_traj.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjcat.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjconv.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_trjorder.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_vanhove.cpp		diff \| blob \| history
src/gromacs/gmxana/gmx_velacc.cpp		diff \| blob \| history
src/gromacs/gmxana/gstat.h		diff \| blob \| history
src/gromacs/gmxana/hxprops.cpp		diff \| blob \| history
src/gromacs/gmxana/hxprops.h		diff \| blob \| history
src/gromacs/gmxana/nrama.h		diff \| blob \| history
src/gromacs/gmxana/nsfactor.cpp		diff \| blob \| history
src/gromacs/gmxana/nsfactor.h		diff \| blob \| history
src/gromacs/gmxana/princ.cpp		diff \| blob \| history
src/gromacs/gmxana/princ.h		diff \| blob \| history
src/gromacs/gmxana/sfactor.cpp		diff \| blob \| history
src/gromacs/gmxana/sfactor.h		diff \| blob \| history
src/gromacs/gmxlib/chargegroup.cpp		diff \| blob \| history
src/gromacs/gmxlib/conformation-utilities.cpp		diff \| blob \| history
src/gromacs/gmxlib/disre.cpp		diff \| blob \| history
src/gromacs/gmxlib/orires.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/add_par.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/convparm.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/gen_ad.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/genhydro.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/grompp-impl.h		diff \| blob \| history
src/gromacs/gmxpreprocess/hackblock.h		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2gmx.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pdb2top.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pgutil.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/pgutil.h		diff \| blob \| history
src/gromacs/gmxpreprocess/topio.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/toppush.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/toppush.h		diff \| blob \| history
src/gromacs/gmxpreprocess/topshake.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/toputil.cpp		diff \| blob \| history
src/gromacs/gmxpreprocess/vsite_parm.cpp		diff \| blob \| history
src/gromacs/imd/imd.cpp		diff \| blob \| history
src/gromacs/legacyheaders/types/inputrec.h		diff \| blob \| history
src/gromacs/legacyheaders/types/ns.h		diff \| blob \| history
src/gromacs/mdlib/adress.cpp		diff \| blob \| history
src/gromacs/mdlib/constr.cpp		diff \| blob \| history
src/gromacs/mdlib/constr.h		diff \| blob \| history
src/gromacs/mdlib/ns.cpp		diff \| blob \| history
src/gromacs/mdlib/qmmm.cpp		diff \| blob \| history
src/gromacs/mdlib/rf_util.cpp		diff \| blob \| history
src/gromacs/mdlib/shakef.cpp		diff \| blob \| history
src/gromacs/mdlib/shellfc.cpp		diff \| blob \| history
src/gromacs/mdlib/tests/shake.cpp		diff \| blob \| history
src/gromacs/mdlib/vsite.cpp		diff \| blob \| history
src/gromacs/pbcutil/mshift.cpp		diff \| blob \| history
src/gromacs/pbcutil/mshift.h		diff \| blob \| history
src/gromacs/pulling/pull_internal.h		diff \| blob \| history
src/gromacs/pulling/pull_rotation.cpp		diff \| blob \| history
src/gromacs/selection/centerofmass.cpp		diff \| blob \| history
src/gromacs/selection/centerofmass.h		diff \| blob \| history
src/gromacs/selection/indexutil.cpp		diff \| blob \| history
src/gromacs/selection/indexutil.h		diff \| blob \| history
src/gromacs/swap/swapcoords.cpp		diff \| blob \| history
src/gromacs/tools/convert_tpr.cpp		diff \| blob \| history
src/gromacs/topology/CMakeLists.txt		diff \| blob \| history
src/gromacs/topology/atom_id.h	[deleted file]	blob \| history
src/gromacs/topology/block.h		diff \| blob \| history
src/gromacs/topology/idef.h		diff \| blob \| history
src/gromacs/topology/index.cpp		diff \| blob \| history
src/gromacs/topology/index.h		diff \| blob \| history
src/gromacs/topology/invblock.cpp		diff \| blob \| history
src/gromacs/topology/invblock.h		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/sasa.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/surfacearea.cpp		diff \| blob \| history
src/gromacs/trajectoryanalysis/modules/surfacearea.h		diff \| blob \| history
src/programs/mdrun/membed.cpp		diff \| blob \| history
src/programs/view/manager.cpp		diff \| blob \| history
src/programs/view/manager.h		diff \| blob \| history
src/programs/view/molps.cpp		diff \| blob \| history
src/programs/view/nmol.cpp		diff \| blob \| history

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