X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=blobdiff_plain;f=src%2Fprograms%2Fmdrun%2Frunner.cpp;h=c9b47b7e5441641de1cff7a382a6729e62183aaa;hb=6d1bc0a87809729252a3e706b6ff24c9df35c57f;hp=864b2b729e6e2a2d462e0638b6d36a35ed75120e;hpb=30692f54df98c3e8612dfdb1aa288ed51a7444b3;p=alexxy%2Fgromacs.git

diff --git a/src/programs/mdrun/runner.cpp b/src/programs/mdrun/runner.cpp
index 864b2b729e..c9b47b7e54 100644
--- a/src/programs/mdrun/runner.cpp
+++ b/src/programs/mdrun/runner.cpp
@@ -39,61 +39,61 @@
 
 #include "config.h"
 
-#include <algorithm>
-
 #include <assert.h>
 #include <signal.h>
 #include <stdlib.h>
 #include <string.h>
+
+#include <algorithm>
 #ifdef HAVE_UNISTD_H
 #include <unistd.h>
 #endif
 
-#include "gromacs/legacyheaders/typedefs.h"
-#include "gromacs/legacyheaders/oenv.h"
+#include "gromacs/essentialdynamics/edsam.h"
+#include "gromacs/fileio/tpxio.h"
+#include "gromacs/gmxpreprocess/calc_verletbuf.h"
+#include "gromacs/legacyheaders/checkpoint.h"
+#include "gromacs/legacyheaders/constr.h"
+#include "gromacs/legacyheaders/coulomb.h"
+#include "gromacs/legacyheaders/disre.h"
+#include "gromacs/legacyheaders/domdec.h"
 #include "gromacs/legacyheaders/force.h"
-#include "gromacs/legacyheaders/mdrun.h"
+#include "gromacs/legacyheaders/gmx_detect_hardware.h"
+#include "gromacs/legacyheaders/gmx_omp_nthreads.h"
+#include "gromacs/legacyheaders/gmx_thread_affinity.h"
+#include "gromacs/legacyheaders/inputrec.h"
+#include "gromacs/legacyheaders/main.h"
 #include "gromacs/legacyheaders/md_logging.h"
 #include "gromacs/legacyheaders/md_support.h"
-#include "gromacs/legacyheaders/network.h"
+#include "gromacs/legacyheaders/mdatoms.h"
+#include "gromacs/legacyheaders/mdrun.h"
+#include "gromacs/legacyheaders/mvdata.h"
 #include "gromacs/legacyheaders/names.h"
-#include "gromacs/legacyheaders/disre.h"
+#include "gromacs/legacyheaders/network.h"
+#include "gromacs/legacyheaders/oenv.h"
 #include "gromacs/legacyheaders/orires.h"
 #include "gromacs/legacyheaders/pme.h"
-#include "gromacs/legacyheaders/mdatoms.h"
-#include "repl_ex.h"
-#include "deform.h"
 #include "gromacs/legacyheaders/qmmm.h"
-#include "gromacs/legacyheaders/domdec.h"
-#include "gromacs/legacyheaders/coulomb.h"
-#include "gromacs/legacyheaders/constr.h"
-#include "gromacs/legacyheaders/mvdata.h"
-#include "gromacs/legacyheaders/checkpoint.h"
-#include "gromacs/topology/mtop_util.h"
 #include "gromacs/legacyheaders/sighandler.h"
 #include "gromacs/legacyheaders/txtdump.h"
-#include "gromacs/legacyheaders/gmx_detect_hardware.h"
-#include "gromacs/legacyheaders/gmx_omp_nthreads.h"
-#include "gromacs/gmxpreprocess/calc_verletbuf.h"
-#include "membed.h"
-#include "gromacs/legacyheaders/gmx_thread_affinity.h"
-#include "gromacs/legacyheaders/inputrec.h"
-#include "gromacs/legacyheaders/main.h"
-
-#include "gromacs/essentialdynamics/edsam.h"
-#include "gromacs/fileio/tpxio.h"
+#include "gromacs/legacyheaders/typedefs.h"
 #include "gromacs/math/vec.h"
-#include "gromacs/mdlib/nbnxn_search.h"
 #include "gromacs/mdlib/nbnxn_consts.h"
+#include "gromacs/mdlib/nbnxn_search.h"
 #include "gromacs/pbcutil/pbc.h"
 #include "gromacs/pulling/pull.h"
 #include "gromacs/pulling/pull_rotation.h"
 #include "gromacs/swap/swapcoords.h"
 #include "gromacs/timing/wallcycle.h"
+#include "gromacs/topology/mtop_util.h"
 #include "gromacs/utility/gmxassert.h"
 #include "gromacs/utility/gmxmpi.h"
 #include "gromacs/utility/smalloc.h"
 
+#include "deform.h"
+#include "membed.h"
+#include "repl_ex.h"
+
 #ifdef GMX_FAHCORE
 #include "corewrap.h"
 #endif