X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=blobdiff_plain;f=docs%2Fold-html%2Fonline%2Fgetting_started.html;h=fcaf75c72df573a62dd2a4911dda7b6882bc13e4;hb=b2b75d45c43c98cf1362e0125381bfc6f0a85782;hp=d9de09fad5adeccebd88ba6de4ab6e03255378d8;hpb=cb466e44535ac45f2ee8341dcae39207b5813abe;p=alexxy%2Fgromacs.git diff --git a/docs/old-html/online/getting_started.html b/docs/old-html/online/getting_started.html index d9de09fad5..fcaf75c72d 100644 --- a/docs/old-html/online/getting_started.html +++ b/docs/old-html/online/getting_started.html @@ -183,8 +183,7 @@ not consider the use of index files. The next step is to combine the molecular structure (.gro file), topology (.top file) MD-parameters (.mdp file) and (optionally) the -index file (ndx) to generate a run input file (.tpr extension or -.tpb if you don't have XDR). +index file (ndx) to generate a run input file (.tpr extension. This file contains all information needed to start a simulation with GROMACS. The gmx grompp program processes all @@ -203,8 +202,7 @@ to start a run is the run input file (.tpr file). The output files of gmx mdrun are the -trajectory file (.trr file -or .trj if you don't have XDR) and a logfile ( +trajectory file (.trr file) and a logfile ( .log file).