X-Git-Url: http://biod.pnpi.spb.ru/gitweb/?a=blobdiff_plain;f=COPYING;h=dddffe127ded8cb5974072599aaeb7641c571e4a;hb=07e8a2a25ab5a62f63af77fe0dd1405cd41ee5ce;hp=58175ae4b97521cc13378d4217763ff714482cb1;hpb=a174d7c5dbac4caf32f0d5296a259b111e7b3881;p=alexxy%2Fgromacs.git diff --git a/COPYING b/COPYING index 58175ae4b9..dddffe127d 100644 --- a/COPYING +++ b/COPYING @@ -11,10 +11,15 @@ This file contains the licenses for the following bodies of code: 1. GROMACS 2. Trajectory file reading using VMD plugins 3. Internal FFT (fftpack) -4. The memtestG80 library -5. thread_mpi -6. Blas -7. Lapack +4. thread_mpi +5. Blas +6. Lapack +7. Subset of Boost C++ library +8. Google Test and Google Mock +9. Sun XDR implementation (External Data Representation) +10. Sun FDLIBM (Freely Distributable Maths Library) +11. Random123 +12. md5 Our chosen method for packaging distributions (CPack) only permits a package to have a single license file, so we are unfortunately forced @@ -24,6 +29,7 @@ about that. ============================================ 1. GROMACS +========== As our use of the LGPL conveys upon a licensee the option to redistribute the library under the terms of the plain GPL, we must @@ -880,11 +886,8 @@ Public License instead of this License. 2. Trajectory file reading using VMD plugins ============================================ - Files: include/molfile_plugin.h - include/vmddlopen.h - include/vmdplugin.h - src/gmxlib/vmddlopen.c - src/gmxlib/vmdio.c + Files: src/external/vmd_molfile/ + src/gromacs/fileio/vmdio.c (C) Copyright 1995-2009 The Board of Trustees of the University of Illinois @@ -924,7 +927,7 @@ OTHER DEALINGS WITH THE SOFTWARE. 3. Internal FFT (ffpack) ======================== - Files: src/mdlib/fftpack.c + Files: src/external/fftpack/fftpack.c Copyright (c) 2005-2011, NumPy Developers. All rights reserved. @@ -960,37 +963,11 @@ OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. fftpack.c : A set of FFT routines in C. Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985). -4. The memtestG80 library -========================= - -The memtestG80 library, written by Imran Haque, is Copyright 2009 Stanford University, -covered by the LGPL license. It may be used under the following terms: - -IN NO EVENT SHALL STANFORD UNIVERSITY BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT, -SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF -THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF STANFORD UNIVERSITY HAS BEEN -ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. - -STANFORD UNIVERSITY SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED -TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. -THE SOFTWARE AND ACCOMPANYING DOCUMENTATION PROVIDED HEREUNDER IS PROVIDED "AS IS". -Folding@home HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, -OR MODIFICATIONS. - -Restrictions: - -You may use this software on a computer system only if you own the system or have the -written permission of the owner. - -You may not alter the software or associated data files. - -Certain builds of this software incorporate by linkage code from the libintl -and libiconv libraries, which are covered by the Library GNU Public License, -available at http://www.gnu.org/licenses/lgpl-3.0.txt. - -5. thread_mpi +4. thread_mpi ============= + Files: src/external/thread_mpi/ + Copyright (c) 2009-2012, Sander Pronk & Erik Lindahl. All rights reserved. @@ -1022,7 +999,7 @@ bugs must be traceable. We will be happy to consider code for inclusion in the official distribution, but derived work should not be called official thread_mpi. -6. Blas +5. Blas ======= These files are semi-automatic translations by f2c from the original netlib BLAS library. @@ -1046,7 +1023,7 @@ better idea to use the full reference implementation. Erik Lindahl, 2008-10-07. -7. Lapack +6. Lapack ========= These files are semi-automatic translations by f2c from the original netlib LAPACK library. @@ -1070,3 +1047,171 @@ in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it better idea to use the full reference implementation. Erik Lindahl, 2008-10-07. + +7. Subset of Boost C++ library +============================== + + Files: src/external/boost/boost/* + +Boost Software License - Version 1.0 - August 17th, 2003 + +Permission is hereby granted, free of charge, to any person or organization +obtaining a copy of the software and accompanying documentation covered by +this license (the "Software") to use, reproduce, display, distribute, +execute, and transmit the Software, and to prepare derivative works of the +Software, and to permit third-parties to whom the Software is furnished to +do so, all subject to the following: + +The copyright notices in the Software and this entire statement, including +the above license grant, this restriction and the following disclaimer, +must be included in all copies of the Software, in whole or in part, and +all derivative works of the Software, unless such copies or derivative +works are solely in the form of machine-executable object code generated by +a source language processor. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT +SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE +FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, +ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER +DEALINGS IN THE SOFTWARE. + +8. Google Test and Google Mock +=============================== + + Files: src/external/gmock-1.7.0/* + +Copyright 2008, Google Inc. +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are +met: + + * Redistributions of source code must retain the above copyright +notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above +copyright notice, this list of conditions and the following disclaimer +in the documentation and/or other materials provided with the +distribution. + * Neither the name of Google Inc. nor the names of its +contributors may be used to endorse or promote products derived from +this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +A PARTICULAR PURPOSE ARE DISCLAIMED. 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Shaw Research. +All rights reserved. + +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are +met: + +* Redistributions of source code must retain the above copyright + notice, this list of conditions, and the following disclaimer. + +* Redistributions in binary form must reproduce the above copyright + notice, this list of conditions, and the following disclaimer in the + documentation and/or other materials provided with the distribution. + +* Neither the name of D. E. Shaw Research nor the names of its + contributors may be used to endorse or promote products derived from + this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS +"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT +LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR +A PARTICULAR PURPOSE ARE DISCLAIMED. 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