/* Check if string starts with substring */
-static bool str_starts(const char *string, const char *substring)
+static gmx_bool str_starts(const char *string, const char *substring)
{
return ( strncmp(string, substring, strlen(substring)) == 0);
}
}
-static bool is_equal(real a, real b)
+static gmx_bool is_equal(real a, real b)
{
real diff, eps=1.0e-7;
float dum1,dum2,dum3;
int npme;
gmx_large_int_t resetsteps=-1;
- bool bFoundResetStr = FALSE;
- bool bResetChecked = FALSE;
+ gmx_bool bFoundResetStr = FALSE;
+ gmx_bool bResetChecked = FALSE;
if (!gmx_fexist(logfile))
}
-static bool analyze_data(
+static gmx_bool analyze_data(
FILE *fp,
const char *fn,
t_perf **perfdata,
t_perf *pd;
char strbuf[STRLEN];
char str_PME_f_load[13];
- bool bCanUseOrigTPR;
+ gmx_bool bCanUseOrigTPR;
if (nrepeats > 1)
/* Get the commands we need to set up the runs from environment variables */
-static void get_program_paths(bool bThreads, char *cmd_mpirun[], char cmd_np[],
+static void get_program_paths(gmx_bool bThreads, char *cmd_mpirun[], char cmd_np[],
char *cmd_mdrun[], int repeats)
{
char *command=NULL;
const char match_mpi[] = "NNODES=";
const char match_mdrun[]= "Program: ";
const char empty_mpirun[] = "";
- bool bMdrun = FALSE;
- bool bMPI = FALSE;
+ gmx_bool bMdrun = FALSE;
+ gmx_bool bMPI = FALSE;
/* Get the commands we need to set up the runs from environment variables */
static void launch_simulation(
- bool bLaunch, /* Should the simulation be launched? */
+ gmx_bool bLaunch, /* Should the simulation be launched? */
FILE *fp, /* General log file */
- bool bThreads, /* whether to use threads */
+ gmx_bool bThreads, /* whether to use threads */
char *cmd_mpirun, /* Command for mpirun */
char *cmd_np, /* Switch for -np or -nt or empty */
char *cmd_mdrun, /* Command for mdrun */
real nlist_buffer; /* Thickness of the buffer regions for PME-switch potentials: */
char buf[200];
rvec box_size;
- bool bNote = FALSE;
+ gmx_bool bNote = FALSE;
t_pmegrid *pmegrid=NULL; /* Grid settings for the PME grids to test */
int npmegrid=1; /* Number of grids that can be tested,
* normally = ntpr but could be less */
/* Whether these files are written depends on tpr (or mdp) settings,
* not on mdrun command line options! */
-static bool tpr_triggers_file(const char *opt)
+static gmx_bool tpr_triggers_file(const char *opt)
{
if ( (0 == strcmp(opt, "-pf"))
|| (0 == strcmp(opt, "-px")) )
/* Rename the files we want to keep to some meaningful filename and
* delete the rest */
static void cleanup(const t_filenm *fnm, int nfile, int k, int nnodes,
- int nPMEnodes, int nr, bool bKeepStderr)
+ int nPMEnodes, int nr, gmx_bool bKeepStderr)
{
char numstring[STRLEN];
char newfilename[STRLEN];
int repeats, /* Repeat each test this often */
int nnodes, /* Total number of nodes = nPP + nPME */
int nr_tprs, /* Total number of tpr files to test */
- bool bThreads, /* Threads or MPI? */
+ gmx_bool bThreads, /* Threads or MPI? */
char *cmd_mpirun, /* mpirun command string */
char *cmd_np, /* "-np", "-n", whatever mpirun needs */
char *cmd_mdrun, /* mdrun command string */
int cmdline_length;
char *command, *cmd_stub;
char buf[STRLEN];
- bool bResetProblem=FALSE;
+ gmx_bool bResetProblem=FALSE;
/* This string array corresponds to the eParselog enum type at the start
/* Returns TRUE when "opt" is a switch for g_tune_pme itself */
-static bool is_main_switch(char *opt)
+static gmx_bool is_main_switch(char *opt)
{
if ( (0 == strcmp(opt,"-s" ))
|| (0 == strcmp(opt,"-p" ))
/* Returns TRUE when "opt" is needed at launch time */
-static bool is_launch_option(char *opt, bool bSet)
+static gmx_bool is_launch_option(char *opt, gmx_bool bSet)
{
if (bSet)
return TRUE;
/* Returns TRUE when "opt" is needed at launch time */
-static bool is_launch_file(char *opt, bool bSet)
+static gmx_bool is_launch_file(char *opt, gmx_bool bSet)
{
/* We need all options that were set on the command line
* and that do not start with -b */
/* Returns TRUE when "opt" gives an option needed for the benchmarks runs */
-static bool is_bench_option(char *opt, bool bSet)
+static gmx_bool is_bench_option(char *opt, gmx_bool bSet)
{
/* If option is set, we might need it for the benchmarks.
* This includes -cpi */
/* Returns TRUE when "opt" defines a file which is needed for the benchmarks runs */
-static bool is_bench_file(char *opt, bool bSet, bool bOptional, bool bIsOutput)
+static gmx_bool is_bench_file(char *opt, gmx_bool bSet, gmx_bool bOptional, gmx_bool bIsOutput)
{
/* All options starting with "-b" are for _b_enchmark files exclusively */
if (0 == strncmp(opt,"-b", 2))
/* Create the command line for the benchmark as well as for the real run */
static void create_command_line_snippets(
- bool bThreads,
+ gmx_bool bThreads,
int presteps,
int nfile,
t_filenm fnm[],
static void couple_files_options(int nfile, t_filenm fnm[])
{
int i;
- bool bSet,bBench;
+ gmx_bool bSet,bBench;
char *opt;
char buf[20];
gmx_large_int_t new_sim_nsteps=-1; /* -1 indicates: not set by the user */
gmx_large_int_t cpt_steps=0; /* Step counter in .cpt input file */
int presteps=100; /* Do a full cycle reset after presteps steps */
- bool bOverwrite=FALSE, bKeepTPR;
- bool bLaunch=FALSE;
- bool bPassAll=FALSE;
+ gmx_bool bOverwrite=FALSE, bKeepTPR;
+ gmx_bool bLaunch=FALSE;
+ gmx_bool bPassAll=FALSE;
char *ExtraArgs=NULL;
char **tpr_names=NULL;
const char *simulation_tpr=NULL;
};
/* Command line options of mdrun */
- bool bDDBondCheck = TRUE;
- bool bDDBondComm = TRUE;
- bool bVerbose = FALSE;
- bool bCompact = TRUE;
- bool bSepPot = FALSE;
- bool bRerunVSite = FALSE;
- bool bIonize = FALSE;
- bool bConfout = TRUE;
- bool bReproducible = FALSE;
- bool bThreads = FALSE;
+ gmx_bool bDDBondCheck = TRUE;
+ gmx_bool bDDBondComm = TRUE;
+ gmx_bool bVerbose = FALSE;
+ gmx_bool bCompact = TRUE;
+ gmx_bool bSepPot = FALSE;
+ gmx_bool bRerunVSite = FALSE;
+ gmx_bool bIonize = FALSE;
+ gmx_bool bConfout = TRUE;
+ gmx_bool bReproducible = FALSE;
+ gmx_bool bThreads = FALSE;
int nmultisim=0;
int nstglobalcomm=-1;
char *deffnm=NULL;
#define STD_CPT_PERIOD (15.0)
real cpt_period=STD_CPT_PERIOD,max_hours=-1;
- bool bAppendFiles=TRUE;
- bool bKeepAndNumCPT=FALSE;
- bool bResetCountersHalfWay=FALSE;
+ gmx_bool bAppendFiles=TRUE;
+ gmx_bool bKeepAndNumCPT=FALSE;
+ gmx_bool bResetCountersHalfWay=FALSE;
output_env_t oenv=NULL;
t_pargs pa[] = {
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff