Lots of editorial fixes to descriptions, etc. to make the manual

[alexxy/gromacs.git] / src / tools / gmx_nmeig.c

diff --git a/src/tools/gmx_nmeig.c b/src/tools/gmx_nmeig.c
index e547e04922af47cf853002688c62175fb194bdec..428561f5bb9ca364f73d410f3170124951b8ba53 100644 (file)
--- a/src/tools/gmx_nmeig.c
+++ b/src/tools/gmx_nmeig.c
@@ -271,15 +271,15 @@ int gmx_nmeig(int argc,char *argv[])
     "manual chapter 1 for details. The result includes subtracting a harmonic",
     "degree of freedom at the given temperature.",
     "The total correction is printed on the terminal screen.",
-    "The recommended way of getting the corrections out is:",
-    "g_nmeig -s topol.tpr -f nm.mtx -first 7 -last 10000 -T 300 -qc [-constr]",
-    "The constr should be used when bond constraints were used during the",
+    "The recommended way of getting the corrections out is:[PAR]",
+    "[TT]g_nmeig -s topol.tpr -f nm.mtx -first 7 -last 10000 -T 300 -qc [-constr][tt][PAR]",
+    "The [TT]-constr[tt] option should be used when bond constraints were used during the",
     "simulation [BB]for all the covalent bonds[bb]. If this is not the case",
-    "you need to analyse the quant_corr.xvg file yourself.[PAR]",
-    "To make things more flexible, the program can also take vsites into account",
+    "you need to analyse the [TT]quant_corr.xvg[tt] file yourself.[PAR]",
+    "To make things more flexible, the program can also take virtual sites into account",
     "when computing quantum corrections. When selecting [TT]-constr[tt] and",
-    "[TT]-qc[tt] the [TT]-begin[tt] and [TT]-end[tt] options will be set automatically as well.",
-    "Again, if you think you know it better, please check the eigenfreq.xvg",
+    "[TT]-qc[tt], the [TT]-begin[tt] and [TT]-end[tt] options will be set automatically as well.",
+    "Again, if you think you know it better, please check the [TT]eigenfreq.xvg[tt]",
     "output." 
   };