"orientation. Box size should be taken from the membrane structure file. The corresponding topology",
"files should also be merged. Consecutively, create a tpr file (input for g_membed) from these files,"
"with the following options included in the mdp file.\n",
- " - integrator = md\n",
- " - energygrp = Protein (or other group that you want to insert)\n",
- " - freezegrps = Protein\n",
- " - freezedim = Y Y Y\n",
- " - energygrp_excl = Protein Protein\n",
+ " - [TT]integrator = md[tt][BR]",
+ " - [TT]energygrp = Protein[tt] (or other group that you want to insert)[BR]",
+ " - [TT]freezegrps = Protein[tt][BR]",
+ " - [TT]freezedim = Y Y Y[tt][BR]",
+ " - [TT]energygrp_excl = Protein Protein[tt][BR]",
"The output is a structure file containing the protein embedded in the membrane. If a topology",
"file is provided, the number of lipid and ",
"solvent molecules will be updated to match the new structure file.\n",