"in the topology start at 1 and the numbers in the input file for",
"genpr number consecutively from 1, genpr will only produce a useful",
"file for the first molecule.[PAR]",
- "The -of option produces an index file that can be used for",
- "freezing atoms. In this case the input file must be a pdb file.[PAR]",
- "With the [TT]-disre[tt] option half a matrix of distance restraints",
+ "The [TT]-of[tt] option produces an index file that can be used for",
+ "freezing atoms. In this case, the input file must be a pdb file.[PAR]",
+ "With the [TT]-disre[tt] option, half a matrix of distance restraints",
"is generated instead of position restraints. With this matrix, that",
"one typically would apply to C-alpha atoms in a protein, one can",
"maintain the overall conformation of a protein without tieing it to",