Merge release-4-5-patches into release-4-6

[alexxy/gromacs.git] / src / tools / gmx_editconf.c

diff --git a/src/tools/gmx_editconf.c b/src/tools/gmx_editconf.c
index 7d33eb4a251442bd3068a21697e0e9a4d0363a2b..5557f7ed72896b29f2644054e83e9e3a2a522e8e 100644 (file)
--- a/src/tools/gmx_editconf.c
+++ b/src/tools/gmx_editconf.c
@@ -589,7 +589,7 @@ int gmx_editconf(int argc, char *argv[])
                         { visbox },
                         "HIDDENVisualize a grid of boxes, -1 visualizes the 14 box images" },
                     { "-bt", FALSE, etENUM,
-                        { btype }, "Box type for -box and -d" },
+                        { btype }, "Box type for [TT]-box[tt] and [TT]-d[tt]" },
                     { "-box", FALSE, etRVEC,
                         { newbox }, "Box vector lengths (a,b,c)" },
                     { "-angles", FALSE, etRVEC,
@@ -598,7 +598,7 @@ int gmx_editconf(int argc, char *argv[])
                         { &dist }, "Distance between the solute and the box" },
                     { "-c", FALSE, etBOOL,
                         { &bCenter },
-                        "Center molecule in box (implied by -box and -d)" },
+                        "Center molecule in box (implied by [TT]-box[tt] and [TT]-d[tt])" },
                     { "-center", FALSE, etRVEC,
                         { center }, "Coordinates of geometrical center" },
                     { "-aligncenter", FALSE, etRVEC,
@@ -634,11 +634,11 @@ int gmx_editconf(int argc, char *argv[])
                         "Default Van der Waals radius (in nm) if one can not be found in the database or if no parameters are present in the topology file" },
                     { "-sig56", FALSE, etREAL,
                         { &bSig56 },
-                        "Use rmin/2 (minimum in the Van der Waals potential) rather than sigma/2 " },
+                        "Use rmin/2 (minimum in the Van der Waals potential) rather than [GRK]sigma[grk]/2 " },
                     {
                         "-vdwread", FALSE, etBOOL,
                         { &bReadVDW },
-                        "Read the Van der Waals radii from the file vdwradii.dat rather than computing the radii based on the force field" },
+                        "Read the Van der Waals radii from the file [TT]vdwradii.dat[tt] rather than computing the radii based on the force field" },
                     { "-atom", FALSE, etBOOL,
                         { &peratom }, "Force B-factor attachment per atom" },
                     { "-legend", FALSE, etBOOL,