Tons of tiny changes to documentation. Manual looks prettier now.

[alexxy/gromacs.git] / src / tools / gmx_chi.c

diff --git a/src/tools/gmx_chi.c b/src/tools/gmx_chi.c
index bf18bdba3f31fba695b2ec3e0e06394c9042175f..0c39fa164b571ed20448cdf0fa9f46400fa35744 100644 (file)
--- a/src/tools/gmx_chi.c
+++ b/src/tools/gmx_chi.c
@@ -1015,7 +1015,7 @@ int gmx_chi(int argc,char *argv[])
     "calculate dihedral autocorrelation functions. The function used",
     "is C(t) = < cos(chi(tau)) cos(chi(tau+t)) >. The use of cosines",
     "rather than angles themselves, resolves the problem of periodicity.",
-    "(Van der Spoel & Berendsen (1997), [BB]Biophys. J. 72[bb], 2032-2041).",
+    "(Van der Spoel & Berendsen (1997), Biophys. J. 72, 2032-2041).",
     "Separate files for each dihedral of each residue", 
     "(corr(dihedral)(RESIDUE)(nresnr).xvg) are output, as well as a", 
     "file containing the information for all residues (argument of [TT]-corr[tt]).[PAR]", 
@@ -1029,8 +1029,8 @@ int gmx_chi(int argc,char *argv[])
     "rotamers per nanosecond,  and the order parameter S2 of each dihedral.[BR]",
     "(d) a table for each residue of the rotamer occupancy.[BR]", 
     "All rotamers are taken as 3-fold, except for omegas and chi-dihedrals",
-    "to planar groups (i.e. chi2 of aromatics asp and asn, chi3 of glu", 
-    "and gln, and chi4 of arg), which are 2-fold. \"rotamer 0\" means ", 
+    "to planar groups (i.e. chi2 of aromatics Asp and Asn, chi3 of Glu", 
+    "and Gln, and chi4 of Arg), which are 2-fold. \"rotamer 0\" means ", 
     "that the dihedral was not in the core region of each rotamer. ", 
     "The width of the core region can be set with [TT]-core_rotamer[tt][PAR]",