#if GMX_FFT_FFTW3 || GMX_FFT_ARMPL_FFTW3
// Needed for construction of the FFT library description string
-#include <fftw3.h>
+# include <fftw3.h>
#endif
#ifdef HAVE_LIBMKL
-#include <mkl.h>
+# include <mkl.h>
#endif
#if HAVE_EXTRAE
-#include <extrae_user_events.h>
+# include <extrae_user_events.h>
#endif
#if GMX_USE_HWLOC
-#include <hwloc.h>
+# include <hwloc.h>
#endif
#include <cstdio>
return std::max(width - length, 0) / 2;
}
-std::string formatCentered(int width, const char *text)
+std::string formatCentered(int width, const char* text)
{
const int offset = centeringOffset(width, std::strlen(text));
return formatString("%*s%s", offset, "", text);
}
-void printCopyright(gmx::TextWriter *writer)
+void printCopyright(gmx::TextWriter* writer)
{
- static const char * const Contributors[] = {
- "Emile Apol",
- "Rossen Apostolov",
- "Paul Bauer",
- "Herman J.C. Berendsen",
- "Par Bjelkmar",
- "Christian Blau",
- "Viacheslav Bolnykh",
- "Kevin Boyd",
- "Aldert van Buuren",
- "Rudi van Drunen",
- "Anton Feenstra",
- "Alan Gray",
- "Gerrit Groenhof",
- "Anca Hamuraru",
- "Vincent Hindriksen",
- "M. Eric Irrgang",
- "Aleksei Iupinov",
- "Christoph Junghans",
- "Joe Jordan",
- "Dimitrios Karkoulis",
- "Peter Kasson",
- "Jiri Kraus",
- "Carsten Kutzner",
- "Per Larsson",
- "Justin A. Lemkul",
- "Viveca Lindahl",
- "Magnus Lundborg",
- "Erik Marklund",
- "Pascal Merz",
- "Pieter Meulenhoff",
- "Teemu Murtola",
- "Szilard Pall",
- "Sander Pronk",
- "Roland Schulz",
- "Michael Shirts",
- "Alexey Shvetsov",
- "Alfons Sijbers",
- "Peter Tieleman",
- "Jon Vincent",
- "Teemu Virolainen",
- "Christian Wennberg",
- "Maarten Wolf",
- "Artem Zhmurov"
+ static const char* const Contributors[] = {
+ "Emile Apol", "Rossen Apostolov", "Paul Bauer", "Herman J.C. Berendsen",
+ "Par Bjelkmar", "Christian Blau", "Viacheslav Bolnykh", "Kevin Boyd",
+ "Aldert van Buuren", "Rudi van Drunen", "Anton Feenstra", "Alan Gray",
+ "Gerrit Groenhof", "Anca Hamuraru", "Vincent Hindriksen", "M. Eric Irrgang",
+ "Aleksei Iupinov", "Christoph Junghans", "Joe Jordan", "Dimitrios Karkoulis",
+ "Peter Kasson", "Jiri Kraus", "Carsten Kutzner", "Per Larsson",
+ "Justin A. Lemkul", "Viveca Lindahl", "Magnus Lundborg", "Erik Marklund",
+ "Pascal Merz", "Pieter Meulenhoff", "Teemu Murtola", "Szilard Pall",
+ "Sander Pronk", "Roland Schulz", "Michael Shirts", "Alexey Shvetsov",
+ "Alfons Sijbers", "Peter Tieleman", "Jon Vincent", "Teemu Virolainen",
+ "Christian Wennberg", "Maarten Wolf", "Artem Zhmurov"
};
- static const char * const CopyrightText[] = {
+ static const char* const CopyrightText[] = {
"Copyright (c) 1991-2000, University of Groningen, The Netherlands.",
"Copyright (c) 2001-2019, The GROMACS development team at",
- "Uppsala University, Stockholm University and",
- "the Royal Institute of Technology, Sweden.",
+ "Uppsala University, Stockholm University and", "the Royal Institute of Technology, Sweden.",
"check out http://www.gromacs.org for more information."
};
// TODO a centering behaviour of TextWriter could be useful here
writer->writeLine(formatCentered(78, "GROMACS is written by:"));
- for (int i = 0; i < NCONTRIBUTORS; )
+ for (int i = 0; i < NCONTRIBUTORS;)
{
for (int j = 0; j < 4 && i < NCONTRIBUTORS; ++j, ++i)
{
const int offset = centeringOffset(width, strlen(Contributors[i]));
GMX_RELEASE_ASSERT(static_cast<int>(strlen(Contributors[i])) + offset < gmx::ssize(buf),
"Formatting buffer is not long enough");
- std::fill(buf.begin(), buf.begin()+offset, ' ');
- std::strncpy(buf.data()+offset, Contributors[i], gmx::ssize(buf) - offset);
+ std::fill(buf.begin(), buf.begin() + offset, ' ');
+ std::strncpy(buf.data() + offset, Contributors[i], gmx::ssize(buf) - offset);
writer->writeString(formatString(" %-*s", width, buf.data()));
}
writer->ensureLineBreak();
}
writer->writeLine(formatCentered(78, "and the project leaders:"));
- writer->writeLine(formatCentered(78, "Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel"));
+ writer->writeLine(
+ formatCentered(78, "Mark Abraham, Berk Hess, Erik Lindahl, and David van der Spoel"));
writer->ensureEmptyLine();
for (int i = 0; i < NCR; ++i)
{
}
// Construct a string that describes the library that provides FFT support to this build
-const char *getFftDescriptionString()
+const char* getFftDescriptionString()
{
// Define the FFT description string
#if GMX_FFT_FFTW3 || GMX_FFT_ARMPL_FFTW3
-# if GMX_NATIVE_WINDOWS
+# if GMX_NATIVE_WINDOWS
// Don't buy trouble
return "fftw3";
-# else
+# else
// Use the version string provided by libfftw3
-# if GMX_DOUBLE
+# if GMX_DOUBLE
return fftw_version;
-# else
+# else
return fftwf_version;
+# endif
# endif
-# endif
#endif
#if GMX_FFT_MKL
return "Intel MKL";
#endif
};
-void gmx_print_version_info(gmx::TextWriter *writer)
+void gmx_print_version_info(gmx::TextWriter* writer)
{
writer->writeLine(formatString("GROMACS version: %s", gmx_version()));
- const char *const git_hash = gmx_version_git_full_hash();
+ const char* const git_hash = gmx_version_git_full_hash();
if (git_hash[0] != '\0')
{
writer->writeLine(formatString("GIT SHA1 hash: %s", git_hash));
}
- const char *const base_hash = gmx_version_git_central_base_hash();
+ const char* const base_hash = gmx_version_git_central_base_hash();
if (base_hash[0] != '\0')
{
writer->writeLine(formatString("Branched from: %s", base_hash));
}
- const char *const releaseSourceChecksum = gmxReleaseSourceChecksum();
- const char *const currentSourceChecksum = gmxCurrentSourceChecksum();
+ const char* const releaseSourceChecksum = gmxReleaseSourceChecksum();
+ const char* const currentSourceChecksum = gmxCurrentSourceChecksum();
if (releaseSourceChecksum[0] != '\0')
{
if (std::strcmp(releaseSourceChecksum, "NoChecksumFile") == 0)
{
- writer->writeLine(formatString("The source code this program was compiled from has not been verified because the reference checksum was missing during compilation. This means you have an incomplete GROMACS distribution, please make sure to download an intact source distribution and compile that before proceeding."));
+ writer->writeLine(formatString(
+ "The source code this program was compiled from has not been verified because "
+ "the reference checksum was missing during compilation. This means you have an "
+ "incomplete GROMACS distribution, please make sure to download an intact "
+ "source distribution and compile that before proceeding."));
writer->writeLine(formatString("Computed checksum: %s", currentSourceChecksum));
}
else if (std::strcmp(releaseSourceChecksum, "NoPythonAvailable") == 0)
{
- writer->writeLine(formatString("Build source could not be verified, because the checksum could not be computed."));
+ writer->writeLine(
+ formatString("Build source could not be verified, because the checksum could "
+ "not be computed."));
}
else if (std::strcmp(releaseSourceChecksum, currentSourceChecksum) != 0)
{
- writer->writeLine(formatString("This program has been built from source code that has been altered and does not match the code released as part of the official GROMACS version %s. If you did not intend to use an altered GROMACS version, make sure to download an intact source distribution and compile that before proceeding.", gmx_version()));
- writer->writeLine(formatString("If you have modified the source code, you are strongly encouraged to set your custom version suffix (using -DGMX_VERSION_STRING_OF_FORK) which will can help later with scientific reproducibility but also when reporting bugs."));
+ writer->writeLine(formatString(
+ "This program has been built from source code that has been altered and does "
+ "not match the code released as part of the official GROMACS version %s. If "
+ "you did not intend to use an altered GROMACS version, make sure to download "
+ "an intact source distribution and compile that before proceeding.",
+ gmx_version()));
+ writer->writeLine(formatString(
+ "If you have modified the source code, you are strongly encouraged to set your "
+ "custom version suffix (using -DGMX_VERSION_STRING_OF_FORK) which will can "
+ "help later with scientific reproducibility but also when reporting bugs."));
writer->writeLine(formatString("Release checksum: %s", releaseSourceChecksum));
writer->writeLine(formatString("Computed checksum: %s", currentSourceChecksum));
}
#else
writer->writeLine("Precision: single");
#endif
- writer->writeLine(formatString("Memory model: %u bit", static_cast<unsigned>(8*sizeof(void *))));
+ writer->writeLine(formatString("Memory model: %u bit", static_cast<unsigned>(8 * sizeof(void*))));
#if GMX_THREAD_MPI
writer->writeLine("MPI library: thread_mpi");
writer->writeLine("MPI library: none");
#endif
#if GMX_OPENMP
- writer->writeLine(formatString("OpenMP support: enabled (GMX_OPENMP_MAX_THREADS = %d)", GMX_OPENMP_MAX_THREADS));
+ writer->writeLine(formatString("OpenMP support: enabled (GMX_OPENMP_MAX_THREADS = %d)",
+ GMX_OPENMP_MAX_THREADS));
#else
writer->writeLine("OpenMP support: disabled");
#endif
#if HAVE_EXTRAE
unsigned major, minor, revision;
Extrae_get_version(&major, &minor, &revision);
- writer->writeLine(formatString("Tracing support: enabled. Using Extrae-%d.%d.%d", major, minor, revision));
+ writer->writeLine(formatString("Tracing support: enabled. Using Extrae-%d.%d.%d", major,
+ minor, revision));
#else
writer->writeLine("Tracing support: disabled");
#endif
writer->writeLine(formatString("C++ compiler flags: %s", BUILD_CXXFLAGS));
#ifdef HAVE_LIBMKL
/* MKL might be used for LAPACK/BLAS even if FFTs use FFTW, so keep it separate */
- writer->writeLine(formatString("Linked with Intel MKL version %d.%d.%d.",
- __INTEL_MKL__, __INTEL_MKL_MINOR__, __INTEL_MKL_UPDATE__));
+ writer->writeLine(formatString("Linked with Intel MKL version %d.%d.%d.", __INTEL_MKL__,
+ __INTEL_MKL_MINOR__, __INTEL_MKL_UPDATE__));
#endif
#if GMX_GPU == GMX_GPU_OPENCL
writer->writeLine(formatString("OpenCL include dir: %s", OPENCL_INCLUDE_DIR));
namespace gmx
{
-BinaryInformationSettings::BinaryInformationSettings()
- : bExtendedInfo_(false), bCopyright_(false),
- bProcessId_(false),
- bGeneratedByHeader_(false), prefix_(""), suffix_("")
+BinaryInformationSettings::BinaryInformationSettings() :
+ bExtendedInfo_(false),
+ bCopyright_(false),
+ bProcessId_(false),
+ bGeneratedByHeader_(false),
+ prefix_(""),
+ suffix_("")
{
}
-void printBinaryInformation(FILE *fp,
- const IProgramContext &programContext)
+void printBinaryInformation(FILE* fp, const IProgramContext& programContext)
{
TextWriter writer(fp);
printBinaryInformation(&writer, programContext, BinaryInformationSettings());
}
-void printBinaryInformation(FILE *fp,
- const IProgramContext &programContext,
- const BinaryInformationSettings &settings)
+void printBinaryInformation(FILE* fp,
+ const IProgramContext& programContext,
+ const BinaryInformationSettings& settings)
{
try
{
TextWriter writer(fp);
printBinaryInformation(&writer, programContext, settings);
}
- GMX_CATCH_ALL_AND_EXIT_WITH_FATAL_ERROR;
+ GMX_CATCH_ALL_AND_EXIT_WITH_FATAL_ERROR
}
-void printBinaryInformation(TextWriter *writer,
- const IProgramContext &programContext,
- const BinaryInformationSettings &settings)
+void printBinaryInformation(TextWriter* writer,
+ const IProgramContext& programContext,
+ const BinaryInformationSettings& settings)
{
// TODO Perhaps the writer could be configured with the prefix and
// suffix strings from the settings?
- const char *prefix = settings.prefix_;
- const char *suffix = settings.suffix_;
- const char *precisionString = "";
+ const char* prefix = settings.prefix_;
+ const char* suffix = settings.suffix_;
+ const char* precisionString = "";
#if GMX_DOUBLE
precisionString = " (double precision)";
#endif
- const char *const name = programContext.displayName();
+ const char* const name = programContext.displayName();
if (settings.bGeneratedByHeader_)
{
writer->writeLine(formatString("%sCreated by:%s", prefix, suffix));
// TODO: It would be nice to know here whether we are really running a
// Gromacs binary or some other binary that is calling Gromacs; we
// could then print "%s is part of GROMACS" or some alternative text.
- std::string title
- = formatString(":-) GROMACS - %s, %s%s (-:", name, gmx_version(), precisionString);
- const int indent
- = centeringOffset(78 - std::strlen(prefix) - std::strlen(suffix), title.length()) + 1;
+ std::string title = formatString(":-) GROMACS - %s, %s%s (-:", name, gmx_version(), precisionString);
+ const int indent =
+ centeringOffset(78 - std::strlen(prefix) - std::strlen(suffix), title.length()) + 1;
writer->writeLine(formatString("%s%*c%s%s", prefix, indent, ' ', title.c_str(), suffix));
writer->writeLine(formatString("%s%s", prefix, suffix));
if (settings.bCopyright_)
writer->writeLine(formatString("%sGROMACS: %s, version %s%s%s", prefix, name,
gmx_version(), precisionString, suffix));
}
- const char *const binaryPath = programContext.fullBinaryPath();
+ const char* const binaryPath = programContext.fullBinaryPath();
if (!gmx::isNullOrEmpty(binaryPath))
{
writer->writeLine(formatString("%sExecutable: %s%s", prefix, binaryPath, suffix));
{
writer->writeLine(formatString("%sProcess ID: %d%s", prefix, gmx_getpid(), suffix));
}
- const char *const commandLine = programContext.commandLine();
+ const char* const commandLine = programContext.commandLine();
if (!gmx::isNullOrEmpty(commandLine))
{
- writer->writeLine(formatString("%sCommand line:%s\n%s %s%s",
- prefix, suffix, prefix, commandLine, suffix));
+ writer->writeLine(formatString("%sCommand line:%s\n%s %s%s", prefix, suffix, prefix,
+ commandLine, suffix));
}
if (settings.bExtendedInfo_)
{
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff