* This file is part of the GROMACS molecular simulation package.
*
* Copyright (c) 2015,2016,2017,2018,2019 by the GROMACS development team.
- * Copyright (c) 2020, by the GROMACS development team, led by
+ * Copyright (c) 2020,2021, by the GROMACS development team, led by
* Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
* and including many others, as listed in the AUTHORS file in the
* top-level source directory and at http://www.gromacs.org.
#include "gromacs/hardware/detecthardware.h"
#include "gromacs/hardware/hardwaretopology.h"
#include "gromacs/hardware/hw_info.h"
+#include "gromacs/listed_forces/gpubonded.h"
#include "gromacs/mdlib/gmx_omp_nthreads.h"
#include "gromacs/mdlib/update_constrain_gpu.h"
#include "gromacs/mdtypes/commrec.h"
// is AMD OpenCL, which offers this variable.
"GPU_DEVICE_ORDINAL"
# elif GMX_GPU_SYCL
- // SYCL-TODO:
- "How to restrict visible devices in SYCL?"
+ // As with OpenCL, there are no portable way to do it.
+ // Intel reference: https://github.com/intel/llvm/blob/sycl/sycl/doc/EnvironmentVariables.md
+ // While SYCL_DEVICE_FILTER is a better option, as of 2021.1-beta10 it is not yet supported.
+ "SYCL_DEVICE_ALLOWLIST"
# else
# error "Unreachable branch"
# endif
} // namespace
bool decideWhetherToUseGpusForNonbondedWithThreadMpi(const TaskTarget nonbondedTarget,
- const std::vector<int>& gpuIdsToUse,
+ const int numDevicesToUse,
const std::vector<int>& userGpuTaskAssignment,
const EmulateGpuNonbonded emulateGpuNonbonded,
const bool buildSupportsNonbondedOnGpu,
// Because this is thread-MPI, we already know about the GPUs that
// all potential ranks can use, and can use that in a global
// decision that will later be consistent.
- auto haveGpus = !gpuIdsToUse.empty();
-
// If we get here, then the user permitted or required GPUs.
- return haveGpus;
+ return (numDevicesToUse > 0);
}
bool decideWhetherToUseGpusForPmeWithThreadMpi(const bool useGpuForNonbonded,
const TaskTarget pmeTarget,
- const std::vector<int>& gpuIdsToUse,
+ const TaskTarget pmeFftTarget,
+ const int numDevicesToUse,
const std::vector<int>& userGpuTaskAssignment,
const gmx_hw_info_t& hardwareInfo,
const t_inputrec& inputrec,
if ((pmeTarget == TaskTarget::Cpu) || !useGpuForNonbonded || !pme_gpu_supports_build(nullptr)
|| !pme_gpu_supports_hardware(hardwareInfo, nullptr) || !pme_gpu_supports_input(inputrec, nullptr))
{
- // PME can't run on a GPU. If the user required that, we issue
- // an error later.
+ // PME can't run on a GPU. If the user required that, we issue an error later.
+ return false;
+ }
+
+ if (pmeFftTarget == TaskTarget::Cpu && !pme_gpu_mixed_mode_supports_input(inputrec, nullptr))
+ {
+ /* User requested PME FFT on CPU, but the current system is not compatible with Mixed mode,
+ * so we don't use GPUs at all.
+ * If the user had -pme gpu, we issue an error later. */
return false;
}
{
// PME can run well on a GPU shared with NB, and we permit
// mdrun to default to try that.
- return !gpuIdsToUse.empty();
+ return numDevicesToUse > 0;
}
if (numRanksPerSimulation < 1)
// Full automated mode for thread-MPI (the default). PME can
// run well on a GPU shared with NB, and we permit mdrun to
// default to it if there is only one GPU available.
- return (gpuIdsToUse.size() == 1);
+ return (numDevicesToUse == 1);
}
// Not enough support for PME on GPUs for anything else
// If we get here, then the user permitted GPUs, which we should
// use for nonbonded interactions.
- return gpusWereDetected;
+ return buildSupportsNonbondedOnGpu && gpusWereDetected;
}
bool decideWhetherToUseGpusForPme(const bool useGpuForNonbonded,
const TaskTarget pmeTarget,
+ const TaskTarget pmeFftTarget,
const std::vector<int>& userGpuTaskAssignment,
const gmx_hw_info_t& hardwareInfo,
const t_inputrec& inputrec,
}
return false;
}
+ if (pmeFftTarget == TaskTarget::Cpu && !pme_gpu_mixed_mode_supports_input(inputrec, &message))
+ {
+ /* User requested PME FFT on CPU, but the current system is not compatible with Mixed mode,
+ * so we don't use GPUs at all. */
+ if (pmeTarget == TaskTarget::Gpu)
+ {
+ GMX_THROW(NotImplementedError("Cannot compute PME interactions in Mixed mode, because " + message));
+ }
+ return false;
+ }
if (pmeTarget == TaskTarget::Cpu)
{
}
}
-bool decideWhetherToUseGpusForBonded(const bool useGpuForNonbonded,
- const bool useGpuForPme,
- const TaskTarget bondedTarget,
- const bool canUseGpuForBonded,
- const bool usingLJPme,
- const bool usingElecPmeOrEwald,
- const int numPmeRanksPerSimulation,
- const bool gpusWereDetected)
+bool decideWhetherToUseGpusForBonded(bool useGpuForNonbonded,
+ bool useGpuForPme,
+ TaskTarget bondedTarget,
+ const t_inputrec& inputrec,
+ const gmx_mtop_t& mtop,
+ int numPmeRanksPerSimulation,
+ bool gpusWereDetected)
{
if (bondedTarget == TaskTarget::Cpu)
{
return false;
}
- if (!canUseGpuForBonded)
+ std::string errorMessage;
+
+ if (!buildSupportsGpuBondeds(&errorMessage))
{
if (bondedTarget == TaskTarget::Gpu)
{
- GMX_THROW(InconsistentInputError(
- "Bonded interactions on the GPU were required, but not supported for these "
- "simulation settings. Change your settings, or do not require using GPUs."));
+ GMX_THROW(InconsistentInputError(errorMessage.c_str()));
+ }
+
+ return false;
+ }
+
+ if (!inputSupportsGpuBondeds(inputrec, mtop, &errorMessage))
+ {
+ if (bondedTarget == TaskTarget::Gpu)
+ {
+ GMX_THROW(InconsistentInputError(errorMessage.c_str()));
}
return false;
// Note that here we assume that the auto setting of PME ranks will not
// choose seperate PME ranks when nonBonded are assigned to the GPU.
bool usingOurCpuForPmeOrEwald =
- (usingLJPme || (usingElecPmeOrEwald && !useGpuForPme && numPmeRanksPerSimulation <= 0));
+ (EVDW_PME(inputrec.vdwtype)
+ || (EEL_PME_EWALD(inputrec.coulombtype) && !useGpuForPme && numPmeRanksPerSimulation <= 0));
return gpusWereDetected && usingOurCpuForPmeOrEwald;
}
const bool useEssentialDynamics,
const bool doOrientationRestraints,
const bool useReplicaExchange,
+ const bool haveFrozenAtoms,
const bool doRerun,
const DevelopmentFeatureFlags& devFlags,
const gmx::MDLogger& mdlog)
if (isDomainDecomposition)
{
- if (!devFlags.enableGpuHaloExchange)
+ if (hasAnyConstraints && !useUpdateGroups)
{
- errorMessage += "Domain decomposition without GPU halo exchange is not supported.\n ";
- }
- else
- {
- if (hasAnyConstraints && !useUpdateGroups)
- {
- errorMessage +=
- "Domain decomposition is only supported with constraints when update "
- "groups "
- "are used. This means constraining all bonds is not supported, except for "
- "small molecules, and box sizes close to half the pair-list cutoff are not "
- "supported.\n ";
- }
-
- if (pmeUsesCpu)
- {
- errorMessage += "With domain decomposition, PME must run fully on the GPU.\n";
- }
+ errorMessage +=
+ "Domain decomposition is only supported with constraints when update "
+ "groups "
+ "are used. This means constraining all bonds is not supported, except for "
+ "small molecules, and box sizes close to half the pair-list cutoff are not "
+ "supported.\n ";
}
}
{
errorMessage += "With separate PME rank(s), PME must run fully on the GPU.\n";
}
-
- if (!devFlags.enableGpuPmePPComm)
- {
- errorMessage += "With separate PME rank(s), PME must use direct communication.\n";
- }
}
if (inputrec.useMts)
{
errorMessage += "Essential dynamics is not supported.\n";
}
- if (inputrec.bPull && pull_have_constraint(inputrec.pull))
+ if (inputrec.bPull && pull_have_constraint(*inputrec.pull))
{
errorMessage += "Constraints pulling is not supported.\n";
}
// The graph is needed, but not supported
errorMessage += "Orientation restraints are not supported.\n";
}
- if (inputrec.efep != efepNO
- && (haveFreeEnergyType(inputrec, efptBONDED) || haveFreeEnergyType(inputrec, efptMASS)))
+ if (inputrec.efep != efepNO && (haveFepPerturbedMasses(mtop) || havePerturbedConstraints(mtop)))
{
errorMessage += "Free energy perturbation for mass and constraints are not supported.\n";
}
"The number of coupled constraints is higher than supported in the GPU LINCS "
"code.\n";
}
+ if (haveFrozenAtoms)
+ {
+ // There is a known bug with frozen atoms and GPU update, see Issue #3920.
+ errorMessage += "Frozen atoms not supported.\n";
+ }
if (!errorMessage.empty())
{
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff