-/* -*- mode: c; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4; c-file-style: "stroustrup"; -*-
+/*
+ * This file is part of the GROMACS molecular simulation package.
*
+ * Copyright (c) 2012,2013,2014, by the GROMACS development team, led by
+ * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
+ * and including many others, as listed in the AUTHORS file in the
+ * top-level source directory and at http://www.gromacs.org.
*
- * This source code is part of
- *
- * G R O M A C S
- *
- * GROningen MAchine for Chemical Simulations
- *
- * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
- * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
- * Copyright (c) 2001-2010, The GROMACS development team,
- * check out http://www.gromacs.org for more information.
-
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
+ * GROMACS is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU Lesser General Public License
+ * as published by the Free Software Foundation; either version 2.1
* of the License, or (at your option) any later version.
*
- * If you want to redistribute modifications, please consider that
- * scientific software is very special. Version control is crucial -
- * bugs must be traceable. We will be happy to consider code for
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+ * GROMACS is distributed in the hope that it will be useful,
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*
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- * the papers on the package - you can find them in the top README file.
+ * You should have received a copy of the GNU Lesser General Public
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*
- * For more info, check our website at http://www.gromacs.org
+ * If you want to redistribute modifications to GROMACS, please
+ * consider that scientific software is very special. Version
+ * control is crucial - bugs must be traceable. We will be happy to
+ * consider code for inclusion in the official distribution, but
+ * derived work must not be called official GROMACS. Details are found
+ * in the README & COPYING files - if they are missing, get the
+ * official version at http://www.gromacs.org.
*
- * And Hey:
- * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon
+ * To help us fund GROMACS development, we humbly ask that you cite
+ * the research papers on the package. Check out http://www.gromacs.org.
*/
+#include "gmxpre.h"
+
+#include "gromacs/legacyheaders/gmx_omp_nthreads.h"
+
+#include "config.h"
+
+#include <assert.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
-#include <assert.h>
-
-#ifdef HAVE_CONFIG_H
-#include <config.h>
-#endif
-
-#include "gmx_fatal.h"
-#include "typedefs.h"
-#include "macros.h"
-#include "network.h"
-#include "copyrite.h"
-#include "gmx_omp_nthreads.h"
-#include "md_logging.h"
+#include "gromacs/legacyheaders/copyrite.h"
+#include "gromacs/legacyheaders/macros.h"
+#include "gromacs/legacyheaders/md_logging.h"
+#include "gromacs/legacyheaders/network.h"
+#include "gromacs/legacyheaders/typedefs.h"
+#include "gromacs/legacyheaders/types/commrec.h"
+#include "gromacs/utility/cstringutil.h"
+#include "gromacs/utility/fatalerror.h"
#include "gromacs/utility/gmxomp.h"
/** Structure with the number of threads for each OpenMP multi-threaded
{
"GMX_DEFAULT_NUM_THREADS should never be set",
"GMX_DOMDEC_NUM_THREADS", "GMX_PAIRSEARCH_NUM_THREADS",
- "GMX_NONBONDED_NUM_THREADS", "GMX_BONDED_NUM_THREADS",
+ "GMX_NONBONDED_NUM_THREADS", "GMX_LISTED_FORCES_NUM_THREADS",
"GMX_PME_NUM_THREADS", "GMX_UPDATE_NUM_THREADS",
"GMX_VSITE_NUM_THREADS",
"GMX_LINCS_NUM_THREADS", "GMX_SETTLE_NUM_THREADS"
/** Number of threads for each algorithmic module.
*
- * File-scope global variable that gets set once in \init_module_nthreads
- * and queried via gmx_omp_nthreads_get.
+ * File-scope global variable that gets set once in pick_module_nthreads()
+ * and queried via gmx_omp_nthreads_get().
*
* All fields are initialized to 0 which should result in errors if
* the init call is omitted.
static omp_module_nthreads_t modth = { 0, 0, {0, 0, 0, 0, 0, 0, 0, 0, 0}, FALSE};
-/** Determine the number of threads for module \mod.
+/** Determine the number of threads for module \p mod.
*
- * \m takes values form the module_nth_t enum and maps these to the
+ * \p m takes values form the module_nth_t enum and maps these to the
* corresponding value in modth_env_var.
*
* Each number of threads per module takes the default value unless
* OMP_NUM_THREADS also has to be set */
if (bFullOmpSupport && getenv("OMP_NUM_THREADS") == NULL)
{
- gmx_fatal(FARGS, "%s=%d is set, the default number of threads also "
- "needs to be set with OMP_NUM_THREADS!",
- modth_env_var[m], nth);
+ gmx_warning("%s=%d is set, the default number of threads also "
+ "needs to be set with OMP_NUM_THREADS!",
+ modth_env_var[m], nth);
}
/* with the group scheme warn if any env var except PME is set */
sprintf(sbuf, "thread-MPI threads");
#else
sprintf(sbuf, "MPI processes");
- sprintf(sbuf1, " per node");
- sprintf(sbuf2, "On node %d: o", cr->sim_nodeid);
+ sprintf(sbuf1, " per rank");
+ sprintf(sbuf2, "On rank %d: o", cr->sim_nodeid);
#endif
}
#endif
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff