Merge release-5-0 into master

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_traj.c

diff --git a/src/gromacs/gmxana/gmx_traj.c b/src/gromacs/gmxana/gmx_traj.c
index 6f26469d7c45b8ede4fb2de984b86cea0c4b7c4f..91e4fa238803cfc2ac425f572cca5f791d3e27f5 100644 (file)
--- a/src/gromacs/gmxana/gmx_traj.c
+++ b/src/gromacs/gmxana/gmx_traj.c
@@ -39,27 +39,27 @@
 #endif
 
 #include <math.h>
+#include <stdlib.h>
 #include <string.h>
+
 #include "gromacs/commandline/pargs.h"
-#include "sysstuff.h"
 #include "typedefs.h"
 #include "gromacs/utility/smalloc.h"
 #include "macros.h"
-#include "vec.h"
-#include "pbc.h"
-#include "gromacs/fileio/futil.h"
-#include "index.h"
-#include "mshift.h"
-#include "xvgr.h"
+#include "gromacs/math/vec.h"
+#include "gromacs/utility/futil.h"
+#include "gromacs/topology/index.h"
+#include "gromacs/fileio/xvgr.h"
+#include "viewit.h"
 #include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
-#include "rmpbc.h"
-#include "physics.h"
+#include "gromacs/pbcutil/rmpbc.h"
+#include "gromacs/math/units.h"
 #include "gromacs/fileio/confio.h"
 #include "gmx_ana.h"
 
 #include "gromacs/linearalgebra/nrjac.h"
-#include "gmx_fatal.h"
+#include "gromacs/utility/fatalerror.h"
 
 static void low_print_data(FILE *fp, real time, rvec x[], int n, atom_id *index,
                            gmx_bool bDim[], const char *sffmt)