Move read_tps_conf() to confio.h

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_sorient.c

diff --git a/src/gromacs/gmxana/gmx_sorient.c b/src/gromacs/gmxana/gmx_sorient.c
index 7de848e5ebe73c76276f13d020e7094b0b112742..ac01e53622643043d4b52931743c9c9ad6994fc9 100644 (file)
--- a/src/gromacs/gmxana/gmx_sorient.c
+++ b/src/gromacs/gmxana/gmx_sorient.c
@@ -37,7 +37,7 @@
 #include "gmxpre.h"
 
 #include "gromacs/commandline/pargs.h"
-#include "gromacs/fileio/tpxio.h"
+#include "gromacs/fileio/confio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/gmxana/gmx_ana.h"
@@ -48,6 +48,7 @@
 #include "gromacs/pbcutil/pbc.h"
 #include "gromacs/pbcutil/rmpbc.h"
 #include "gromacs/topology/index.h"
+#include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/fatalerror.h"
 #include "gromacs/utility/smalloc.h"
 
@@ -145,12 +146,14 @@ int gmx_sorient(int argc, char *argv[])
     const char     *desc[] = {
         "[THISMODULE] analyzes solvent orientation around solutes.",
         "It calculates two angles between the vector from one or more",
-        "reference positions to the first atom of each solvent molecule:[PAR]",
-        "[GRK]theta[grk][SUB]1[sub]: the angle with the vector from the first atom of the solvent",
-        "molecule to the midpoint between atoms 2 and 3.[BR]",
-        "[GRK]theta[grk][SUB]2[sub]: the angle with the normal of the solvent plane, defined by the",
-        "same three atoms, or, when the option [TT]-v23[tt] is set, ",
-        "the angle with the vector between atoms 2 and 3.[PAR]",
+        "reference positions to the first atom of each solvent molecule:",
+        "",
+        " * [GRK]theta[grk][SUB]1[sub]: the angle with the vector from the first atom of the solvent",
+        "   molecule to the midpoint between atoms 2 and 3.",
+        " * [GRK]theta[grk][SUB]2[sub]: the angle with the normal of the solvent plane, defined by the",
+        "   same three atoms, or, when the option [TT]-v23[tt] is set, ",
+        "   the angle with the vector between atoms 2 and 3.",
+        "",
         "The reference can be a set of atoms or",
         "the center of mass of a set of atoms. The group of solvent atoms should",
         "consist of 3 atoms per solvent molecule.",