Make (most) HTML links to file formats work again

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_rms.c

diff --git a/src/gromacs/gmxana/gmx_rms.c b/src/gromacs/gmxana/gmx_rms.c
index f399105e7094c4be9e24b4c920635f2a99ddacf1..4a35277dc526007b2cee6ea1f49aa6e869adbcac 100644 (file)
--- a/src/gromacs/gmxana/gmx_rms.c
+++ b/src/gromacs/gmxana/gmx_rms.c
@@ -114,7 +114,7 @@ int gmx_rms(int argc, char *argv[])
         "Option [TT]-prev[tt] produces the comparison with a previous frame",
         "the specified number of frames ago.[PAR]",
 
-        "Option [TT]-m[tt] produces a matrix in [TT].xpm[tt] format of",
+        "Option [TT]-m[tt] produces a matrix in [REF].xpm[ref] format of",
         "comparison values of each structure in the trajectory with respect to",
         "each other structure. This file can be visualized with for instance",
         "[TT]xv[tt] and can be converted to postscript with [gmx-xpm2ps].[PAR]",
@@ -125,7 +125,7 @@ int gmx_rms(int argc, char *argv[])
 
         "Option [TT]-mw[tt] controls whether mass weighting is done or not.",
         "If you select the option (default) and ",
-        "supply a valid [TT].tpr[tt] file masses will be taken from there, ",
+        "supply a valid [REF].tpr[ref] file masses will be taken from there, ",
         "otherwise the masses will be deduced from the [TT]atommass.dat[tt] file in",
         "[TT]GMXLIB[tt]. This is fine for proteins, but not",
         "necessarily for other molecules. A default mass of 12.011 amu (carbon)",