Remove .tpa, .tpb, .tpx, .trj files. Part of #1500.

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_helixorient.c

diff --git a/src/gromacs/gmxana/gmx_helixorient.c b/src/gromacs/gmxana/gmx_helixorient.c
index 6bc1738ea0535949dd5f9443383d23fe46400ebd..dfd3a1f7cfc7c7bc2948a523db111fde4433f370 100644 (file)
--- a/src/gromacs/gmxana/gmx_helixorient.c
+++ b/src/gromacs/gmxana/gmx_helixorient.c
@@ -34,7 +34,7 @@
  * To help us fund GROMACS development, we humbly ask that you cite
  * the research papers on the package. Check out http://www.gromacs.org.
  */
-#include "config.h"
+#include "gmxpre.h"
 
 #include <math.h>
 
@@ -149,7 +149,7 @@ int gmx_helixorient(int argc, char *argv[])
 #define NPA asize(pa)
 
     t_filenm fnm[] = {
-        { efTPX, NULL, NULL, ffREAD },
+        { efTPR, NULL, NULL, ffREAD },
         { efTRX, "-f", NULL, ffREAD },
         { efNDX, NULL, NULL, ffOPTRD },
         { efDAT, "-oaxis",    "helixaxis", ffWRITE },
@@ -163,13 +163,13 @@ int gmx_helixorient(int argc, char *argv[])
     };
 #define NFILE asize(fnm)
 
-    if (!parse_common_args(&argc, argv, PCA_CAN_TIME | PCA_BE_NICE,
+    if (!parse_common_args(&argc, argv, PCA_CAN_TIME,
                            NFILE, fnm, NPA, pa, asize(desc), desc, 0, NULL, &oenv))
     {
         return 0;
     }
 
-    top = read_top(ftp2fn(efTPX, NFILE, fnm), &ePBC);
+    top = read_top(ftp2fn(efTPR, NFILE, fnm), &ePBC);
 
     for (i = 0; i < 3; i++)
     {