Merge release-5-0 into master
[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_genion.c
index 6abf410904ad2a55ba02072435b4cea8e27c86a6..9456e4825a73acd90ad5391fcf439083fce43eb7 100644 (file)
 #endif
 
 #include <ctype.h>
+#include <stdlib.h>
 #include <string.h>
 
 #include "gromacs/utility/cstringutil.h"
 #include "gromacs/utility/smalloc.h"
-#include "sysstuff.h"
 #include "gromacs/fileio/confio.h"
 #include "gromacs/commandline/pargs.h"
-#include "pbc.h"
+#include "gromacs/pbcutil/pbc.h"
 #include "force.h"
-#include "gmx_fatal.h"
-#include "gromacs/fileio/futil.h"
+#include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/futil.h"
 #include "gromacs/math/utilities.h"
 #include "macros.h"
-#include "vec.h"
+#include "gromacs/math/vec.h"
 #include "gromacs/fileio/tpxio.h"
 #include "mdrun.h"
-#include "main.h"
 #include "gromacs/random/random.h"
-#include "index.h"
-#include "mtop_util.h"
+#include "gromacs/topology/index.h"
 #include "gmx_ana.h"
 
 static void insert_ion(int nsa, int *nwater,