* To help us fund GROMACS development, we humbly ask that you cite
* the research papers on the package. Check out http://www.gromacs.org.
*/
-#ifdef HAVE_CONFIG_H
-#include <config.h>
-#endif
+#include "gmxpre.h"
+
#include <string.h>
#include <math.h>
#include "gromacs/utility/cstringutil.h"
-#include "typedefs.h"
-#include "gmx_fatal.h"
-#include "vec.h"
+#include "gromacs/legacyheaders/typedefs.h"
+#include "gromacs/utility/fatalerror.h"
+#include "gromacs/math/vec.h"
#include "gromacs/utility/smalloc.h"
#include "gromacs/fileio/enxio.h"
#include "gromacs/commandline/pargs.h"
-#include "names.h"
-#include "macros.h"
-#include "xvgr.h"
+#include "gromacs/legacyheaders/names.h"
+#include "gromacs/legacyheaders/macros.h"
+#include "gromacs/fileio/xvgr.h"
#include "gstat.h"
-#include "physics.h"
+#include "gromacs/math/units.h"
#include "gromacs/fileio/matio.h"
#include "gromacs/fileio/strdb.h"
#include "gmx_ana.h"
t_filenm fnm[] = {
{ efEDR, "-f", NULL, ffOPTRD },
- { efDAT, "-groups", "groups.dat", ffREAD },
- { efDAT, "-eref", "eref.dat", ffOPTRD },
- { efXPM, "-emat", "emat", ffWRITE },
+ { efDAT, "-groups", "groups", ffREAD },
+ { efDAT, "-eref", "eref", ffOPTRD },
+ { efXPM, "-emat", "emat", ffWRITE },
{ efXVG, "-etot", "energy", ffWRITE }
};
#define NFILE asize(fnm)
- if (!parse_common_args(&argc, argv, PCA_CAN_VIEW | PCA_CAN_TIME | PCA_BE_NICE,
+ if (!parse_common_args(&argc, argv, PCA_CAN_VIEW | PCA_CAN_TIME,
NFILE, fnm, asize(pa), pa, asize(desc), desc, 0, NULL, &oenv))
{
return 0;