Move read_tps_conf() to confio.h

[alexxy/gromacs.git] / src / gromacs / gmxana / gmx_do_dssp.c

diff --git a/src/gromacs/gmxana/gmx_do_dssp.c b/src/gromacs/gmxana/gmx_do_dssp.c
index 9cc1300295704ca86527a0ac60e5ce1a8eb4a656..cc33e1764130faae364939cabea2206a0680a2b5 100644 (file)
--- a/src/gromacs/gmxana/gmx_do_dssp.c
+++ b/src/gromacs/gmxana/gmx_do_dssp.c
@@ -39,10 +39,10 @@
 #include <stdlib.h>
 
 #include "gromacs/commandline/pargs.h"
+#include "gromacs/fileio/confio.h"
 #include "gromacs/fileio/matio.h"
 #include "gromacs/fileio/pdbio.h"
 #include "gromacs/fileio/strdb.h"
-#include "gromacs/fileio/tpxio.h"
 #include "gromacs/fileio/trxio.h"
 #include "gromacs/fileio/xvgr.h"
 #include "gromacs/gmxana/gstat.h"
@@ -52,7 +52,9 @@
 #include "gromacs/pbcutil/rmpbc.h"
 #include "gromacs/topology/index.h"
 #include "gromacs/utility/cstringutil.h"
+#include "gromacs/utility/dir_separator.h"
 #include "gromacs/utility/fatalerror.h"
+#include "gromacs/utility/futil.h"
 #include "gromacs/utility/smalloc.h"
 
 static int strip_dssp(char *dsspfile, int nres,
@@ -450,9 +452,9 @@ int gmx_do_dssp(int argc, char *argv[])
         "Even newer versions (which at the time of writing are not yet released)",
         "are assumed to have the same syntax as 2.0.0.[PAR]",
         "The structure assignment for each residue and time is written to an",
-        "[TT].xpm[tt] matrix file. This file can be visualized with for instance",
+        "[REF].xpm[ref] matrix file. This file can be visualized with for instance",
         "[TT]xv[tt] and can be converted to postscript with [TT]xpm2ps[tt].",
-        "Individual chains are separated by light grey lines in the [TT].xpm[tt] and",
+        "Individual chains are separated by light grey lines in the [REF].xpm[ref] and",
         "postscript files.",
         "The number of residues with each secondary structure type and the",
         "total secondary structure ([TT]-sss[tt]) count as a function of",