*
* Copyright (c) 1991-2000, University of Groningen, The Netherlands.
* Copyright (c) 2001-2004, The GROMACS development team.
- * Copyright (c) 2013,2014, by the GROMACS development team, led by
+ * Copyright (c) 2013,2014,2015, by the GROMACS development team, led by
* Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
* and including many others, as listed in the AUTHORS file in the
* top-level source directory and at http://www.gromacs.org.
#include "gromacs/fileio/confio.h"
#include "gromacs/fileio/filenm.h"
#include "gromacs/fileio/pdbio.h"
-#include "gromacs/fileio/tpxio.h"
#include "gromacs/gmxana/gmx_ana.h"
#include "gromacs/legacyheaders/macros.h"
#include "gromacs/legacyheaders/txtdump.h"
#include "gromacs/math/vec.h"
#include "gromacs/pbcutil/rmpbc.h"
#include "gromacs/topology/index.h"
+#include "gromacs/utility/cstringutil.h"
#include "gromacs/utility/fatalerror.h"
#include "gromacs/utility/futil.h"
#include "gromacs/utility/smalloc.h"
"will be used for the fit and RMSD calculation. This can be useful ",
"when comparing mutants of a protein.",
"[PAR]",
- "The superimposed structures are written to file. In a [TT].pdb[tt] file",
+ "The superimposed structures are written to file. In a [REF].pdb[ref] file",
"the two structures will be written as separate models",
- "(use [TT]rasmol -nmrpdb[tt]). Also in a [TT].pdb[tt] file, B-factors",
+ "(use [TT]rasmol -nmrpdb[tt]). Also in a [REF].pdb[ref] file, B-factors",
"calculated from the atomic MSD values can be written with [TT]-bfac[tt].",
};
static gmx_bool bOne = FALSE, bRmpbc = FALSE, bMW = TRUE, bName = FALSE,