"With option [TT]-all[tt], the angles themselves as a function of time for",
"each residue are printed to separate files [TT](dihedral)(RESIDUE)(nresnr).xvg[tt].",
"These can be in radians or degrees.[PAR]",
- "A log file (argument [TT]-g[tt]) is also written. This contains [BR]",
- "(a) information about the number of residues of each type.[BR]",
- "(b) The NMR ^3J coupling constants from the Karplus equation.[BR]",
- "(c) a table for each residue of the number of transitions between ",
- "rotamers per nanosecond, and the order parameter S^2 of each dihedral.[BR]",
- "(d) a table for each residue of the rotamer occupancy.[PAR]",
+ "A log file (argument [TT]-g[tt]) is also written. This contains",
+ "",
+ " * information about the number of residues of each type.",
+ " * The NMR ^3J coupling constants from the Karplus equation.",
+ " * a table for each residue of the number of transitions between ",
+ " rotamers per nanosecond, and the order parameter S^2 of each dihedral.",
+ " * a table for each residue of the rotamer occupancy.",
+ "",
"All rotamers are taken as 3-fold, except for [GRK]omega[grk] and [GRK]chi[grk] dihedrals",
"to planar groups (i.e. [GRK]chi[grk][SUB]2[sub] of aromatics, Asp and Asn; [GRK]chi[grk][SUB]3[sub] of Glu",
"and Gln; and [GRK]chi[grk][SUB]4[sub] of Arg), which are 2-fold. \"rotamer 0\" means ",