added Verlet scheme and NxN non-bonded functionality
[alexxy/gromacs.git] / src / gmxlib / maths.c
index b327777992480f6d29c7a1e6a426772c8479f617..13388c5d937ba1a2c2416d6223be368e8207b682 100644 (file)
@@ -103,8 +103,6 @@ real sign(real x,real y)
 #endif
 
 
-#ifdef GMX_DOUBLE
-
 static const double
 tiny       = 1e-300,
 half=  5.00000000000000000000e-01, /* 0x3FE00000, 0x00000000 */
@@ -180,7 +178,7 @@ sb5  =  2.55305040643316442583e+03, /* 0x40A3F219, 0xCEDF3BE6 */
 sb6  =  4.74528541206955367215e+02, /* 0x407DA874, 0xE79FE763 */
 sb7  = -2.24409524465858183362e+01; /* 0xC03670E2, 0x42712D62 */
 
-double gmx_erf(double x)
+double gmx_erfd(double x)
 {
   
        erf_int32_t hx,ix,i;
@@ -275,7 +273,7 @@ double gmx_erf(double x)
 }
 
 
-double gmx_erfc(double x)
+double gmx_erfcd(double x)
 {
        erf_int32_t hx,ix;
        double R,S,P,Q,s,y,z,r;
@@ -388,84 +386,81 @@ double gmx_erfc(double x)
        }
 }
 
-#else /* single precision */
-
-
 
 static const float
-tiny       = 1e-30,
-half=  5.0000000000e-01, /* 0x3F000000 */
-one =  1.0000000000e+00, /* 0x3F800000 */
-two =  2.0000000000e+00, /* 0x40000000 */
+tinyf=  1e-30,
+halff=  5.0000000000e-01, /* 0x3F000000 */
+onef =  1.0000000000e+00, /* 0x3F800000 */
+twof =  2.0000000000e+00, /* 0x40000000 */
        /* c = (subfloat)0.84506291151 */
-erx =  8.4506291151e-01, /* 0x3f58560b */
+erxf =  8.4506291151e-01, /* 0x3f58560b */
 /*
  * Coefficients for approximation to  erf on [0,0.84375]
  */
-efx =  1.2837916613e-01, /* 0x3e0375d4 */
-efx8=  1.0270333290e+00, /* 0x3f8375d4 */
-pp0  =  1.2837916613e-01, /* 0x3e0375d4 */
-pp1  = -3.2504209876e-01, /* 0xbea66beb */
-pp2  = -2.8481749818e-02, /* 0xbce9528f */
-pp3  = -5.7702702470e-03, /* 0xbbbd1489 */
-pp4  = -2.3763017452e-05, /* 0xb7c756b1 */
-qq1  =  3.9791721106e-01, /* 0x3ecbbbce */
-qq2  =  6.5022252500e-02, /* 0x3d852a63 */
-qq3  =  5.0813062117e-03, /* 0x3ba68116 */
-qq4  =  1.3249473704e-04, /* 0x390aee49 */
-qq5  = -3.9602282413e-06, /* 0xb684e21a */
+efxf =  1.2837916613e-01, /* 0x3e0375d4 */
+efx8f=  1.0270333290e+00, /* 0x3f8375d4 */
+pp0f =  1.2837916613e-01, /* 0x3e0375d4 */
+pp1f = -3.2504209876e-01, /* 0xbea66beb */
+pp2f = -2.8481749818e-02, /* 0xbce9528f */
+pp3f = -5.7702702470e-03, /* 0xbbbd1489 */
+pp4f = -2.3763017452e-05, /* 0xb7c756b1 */
+qq1f =  3.9791721106e-01, /* 0x3ecbbbce */
+qq2f =  6.5022252500e-02, /* 0x3d852a63 */
+qq3f =  5.0813062117e-03, /* 0x3ba68116 */
+qq4f =  1.3249473704e-04, /* 0x390aee49 */
+qq5f = -3.9602282413e-06, /* 0xb684e21a */
 /*
  * Coefficients for approximation to  erf  in [0.84375,1.25] 
  */
-pa0  = -2.3621185683e-03, /* 0xbb1acdc6 */
-pa1  =  4.1485610604e-01, /* 0x3ed46805 */
-pa2  = -3.7220788002e-01, /* 0xbebe9208 */
-pa3  =  3.1834661961e-01, /* 0x3ea2fe54 */
-pa4  = -1.1089469492e-01, /* 0xbde31cc2 */
-pa5  =  3.5478305072e-02, /* 0x3d1151b3 */
-pa6  = -2.1663755178e-03, /* 0xbb0df9c0 */
-qa1  =  1.0642088205e-01, /* 0x3dd9f331 */
-qa2  =  5.4039794207e-01, /* 0x3f0a5785 */
-qa3  =  7.1828655899e-02, /* 0x3d931ae7 */
-qa4  =  1.2617121637e-01, /* 0x3e013307 */
-qa5  =  1.3637083583e-02, /* 0x3c5f6e13 */
-qa6  =  1.1984500103e-02, /* 0x3c445aa3 */
+pa0f = -2.3621185683e-03, /* 0xbb1acdc6 */
+pa1f =  4.1485610604e-01, /* 0x3ed46805 */
+pa2f = -3.7220788002e-01, /* 0xbebe9208 */
+pa3f =  3.1834661961e-01, /* 0x3ea2fe54 */
+pa4f = -1.1089469492e-01, /* 0xbde31cc2 */
+pa5f =  3.5478305072e-02, /* 0x3d1151b3 */
+pa6f = -2.1663755178e-03, /* 0xbb0df9c0 */
+qa1f =  1.0642088205e-01, /* 0x3dd9f331 */
+qa2f =  5.4039794207e-01, /* 0x3f0a5785 */
+qa3f =  7.1828655899e-02, /* 0x3d931ae7 */
+qa4f =  1.2617121637e-01, /* 0x3e013307 */
+qa5f =  1.3637083583e-02, /* 0x3c5f6e13 */
+qa6f =  1.1984500103e-02, /* 0x3c445aa3 */
 /*
  * Coefficients for approximation to  erfc in [1.25,1/0.35]
  */
-ra0  = -9.8649440333e-03, /* 0xbc21a093 */
-ra1  = -6.9385856390e-01, /* 0xbf31a0b7 */
-ra2  = -1.0558626175e+01, /* 0xc128f022 */
-ra3  = -6.2375331879e+01, /* 0xc2798057 */
-ra4  = -1.6239666748e+02, /* 0xc322658c */
-ra5  = -1.8460508728e+02, /* 0xc3389ae7 */
-ra6  = -8.1287437439e+01, /* 0xc2a2932b */
-ra7  = -9.8143291473e+00, /* 0xc11d077e */
-sa1  =  1.9651271820e+01, /* 0x419d35ce */
-sa2  =  1.3765776062e+02, /* 0x4309a863 */
-sa3  =  4.3456588745e+02, /* 0x43d9486f */
-sa4  =  6.4538726807e+02, /* 0x442158c9 */
-sa5  =  4.2900814819e+02, /* 0x43d6810b */
-sa6  =  1.0863500214e+02, /* 0x42d9451f */
-sa7  =  6.5702495575e+00, /* 0x40d23f7c */
-sa8  = -6.0424413532e-02, /* 0xbd777f97 */
+ra0f = -9.8649440333e-03, /* 0xbc21a093 */
+ra1f = -6.9385856390e-01, /* 0xbf31a0b7 */
+ra2f = -1.0558626175e+01, /* 0xc128f022 */
+ra3f = -6.2375331879e+01, /* 0xc2798057 */
+ra4f = -1.6239666748e+02, /* 0xc322658c */
+ra5f = -1.8460508728e+02, /* 0xc3389ae7 */
+ra6f = -8.1287437439e+01, /* 0xc2a2932b */
+ra7f = -9.8143291473e+00, /* 0xc11d077e */
+sa1f =  1.9651271820e+01, /* 0x419d35ce */
+sa2f =  1.3765776062e+02, /* 0x4309a863 */
+sa3f =  4.3456588745e+02, /* 0x43d9486f */
+sa4f =  6.4538726807e+02, /* 0x442158c9 */
+sa5f =  4.2900814819e+02, /* 0x43d6810b */
+sa6f =  1.0863500214e+02, /* 0x42d9451f */
+sa7f =  6.5702495575e+00, /* 0x40d23f7c */
+sa8f = -6.0424413532e-02, /* 0xbd777f97 */
 /*
  * Coefficients for approximation to  erfc in [1/.35,28]
  */
-rb0  = -9.8649431020e-03, /* 0xbc21a092 */
-rb1  = -7.9928326607e-01, /* 0xbf4c9dd4 */
-rb2  = -1.7757955551e+01, /* 0xc18e104b */
-rb3  = -1.6063638306e+02, /* 0xc320a2ea */
-rb4  = -6.3756646729e+02, /* 0xc41f6441 */
-rb5  = -1.0250950928e+03, /* 0xc480230b */
-rb6  = -4.8351919556e+02, /* 0xc3f1c275 */
-sb1  =  3.0338060379e+01, /* 0x41f2b459 */
-sb2  =  3.2579251099e+02, /* 0x43a2e571 */
-sb3  =  1.5367296143e+03, /* 0x44c01759 */
-sb4  =  3.1998581543e+03, /* 0x4547fdbb */
-sb5  =  2.5530502930e+03, /* 0x451f90ce */
-sb6  =  4.7452853394e+02, /* 0x43ed43a7 */
-sb7  = -2.2440952301e+01; /* 0xc1b38712 */
+rb0f = -9.8649431020e-03, /* 0xbc21a092 */
+rb1f = -7.9928326607e-01, /* 0xbf4c9dd4 */
+rb2f = -1.7757955551e+01, /* 0xc18e104b */
+rb3f = -1.6063638306e+02, /* 0xc320a2ea */
+rb4f = -6.3756646729e+02, /* 0xc41f6441 */
+rb5f = -1.0250950928e+03, /* 0xc480230b */
+rb6f = -4.8351919556e+02, /* 0xc3f1c275 */
+sb1f =  3.0338060379e+01, /* 0x41f2b459 */
+sb2f =  3.2579251099e+02, /* 0x43a2e571 */
+sb3f =  1.5367296143e+03, /* 0x44c01759 */
+sb4f =  3.1998581543e+03, /* 0x4547fdbb */
+sb5f =  2.5530502930e+03, /* 0x451f90ce */
+sb6f =  4.7452853394e+02, /* 0x43ed43a7 */
+sb7f = -2.2440952301e+01; /* 0xc1b38712 */
 
 
 typedef union
@@ -490,7 +485,7 @@ do {                                                                \
 } while (0)
 
 
-float gmx_erf(float x)
+float gmx_erff(float x)
 {
        erf_int32_t hx,ix,i;
        float R,S,P,Q,s,y,z,r;
@@ -510,7 +505,7 @@ float gmx_erf(float x)
     {
                /* erf(nan)=nan */
            i = ((erf_u_int32_t)hx>>31)<<1;
-           return (float)(1-i)+one/x;  /* erf(+-inf)=+-1 */
+           return (float)(1-i)+onef/x; /* erf(+-inf)=+-1 */
        }
 
        if(ix < 0x3f580000)
@@ -520,41 +515,41 @@ float gmx_erf(float x)
         { 
             /* |x|<2**-28 */
                if (ix < 0x04000000) 
-                return (float)0.125*((float)8.0*x+efx8*x);                 /*avoid underflow */
-            return x + efx*x;
+                return (float)0.125*((float)8.0*x+efx8f*x);                /*avoid underflow */
+            return x + efxf*x;
            }
         z = x*x;
-        r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
-           s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
+        r = pp0f+z*(pp1f+z*(pp2f+z*(pp3f+z*pp4f)));
+           s = onef+z*(qq1f+z*(qq2f+z*(qq3f+z*(qq4f+z*qq5f))));
            y = r/s;
            return x + x*y;
        }
        if(ix < 0x3fa00000) 
     {  
         /* 0.84375 <= |x| < 1.25 */
-           s = fabs(x)-one;
-           P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
-           Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
-           if(hx>=0) return erx + P/Q; else return -erx - P/Q;
+           s = fabs(x)-onef;
+           P = pa0f+s*(pa1f+s*(pa2f+s*(pa3f+s*(pa4f+s*(pa5f+s*pa6f)))));
+           Q = onef+s*(qa1f+s*(qa2f+s*(qa3f+s*(qa4f+s*(qa5f+s*qa6f)))));
+           if(hx>=0) return erxf + P/Q; else return -erxf - P/Q;
        }
     if (ix >= 0x40c00000)
     {
                /* inf>|x|>=6 */
-        if(hx>=0) return one-tiny; else return tiny-one;
+        if(hx>=0) return onef-tinyf; else return tinyf-onef;
        }
        x = fabs(x);
-       s = one/(x*x);
+       s = onef/(x*x);
     if(ix< 0x4036DB6E)
     {
         /* |x| < 1/0.35 */
-           R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
-           S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
+           R=ra0f+s*(ra1f+s*(ra2f+s*(ra3f+s*(ra4f+s*(ra5f+s*(ra6f+s*ra7f))))));
+           S=onef+s*(sa1f+s*(sa2f+s*(sa3f+s*(sa4f+s*(sa5f+s*(sa6f+s*(sa7f+s*sa8f)))))));
        } 
     else
     {  
         /* |x| >= 1/0.35 */
-           R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
-           S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
+           R=rb0f+s*(rb1f+s*(rb2f+s*(rb3f+s*(rb4f+s*(rb5f+s*rb6f)))));
+           S=onef+s*(sb1f+s*(sb2f+s*(sb3f+s*(sb4f+s*(sb5f+s*(sb6f+s*sb7f))))));
        }
     
     conv.f = x;
@@ -562,10 +557,10 @@ float gmx_erf(float x)
     z = conv.f;
 
        r  =  exp(-z*z-(float)0.5625)*exp((z-x)*(z+x)+R/S);
-       if(hx>=0) return one-r/x; else return  r/x-one;
+       if(hx>=0) return onef-r/x; else return  r/x-onef;
 }
 
-float gmx_erfc(float x)
+float gmx_erfcf(float x)
 {
        erf_int32_t hx,ix;
        float R,S,P,Q,s,y,z,r;
@@ -585,55 +580,55 @@ float gmx_erfc(float x)
     {
         /* erfc(nan)=nan */
         /* erfc(+-inf)=0,2 */
-           return (float)(((erf_u_int32_t)hx>>31)<<1)+one/x;
+           return (float)(((erf_u_int32_t)hx>>31)<<1)+onef/x;
        }
 
        if(ix < 0x3f580000) 
     {
                /* |x|<0.84375 */
            if(ix < 0x23800000)    
-            return one-x;      /* |x|<2**-56 */
+            return onef-x;     /* |x|<2**-56 */
            z = x*x;
-           r = pp0+z*(pp1+z*(pp2+z*(pp3+z*pp4)));
-           s = one+z*(qq1+z*(qq2+z*(qq3+z*(qq4+z*qq5))));
+           r = pp0f+z*(pp1f+z*(pp2f+z*(pp3f+z*pp4f)));
+           s = onef+z*(qq1f+z*(qq2f+z*(qq3f+z*(qq4f+z*qq5f))));
            y = r/s;
            if(hx < 0x3e800000)
         {
             /* x<1/4 */
-            return one-(x+x*y);
+            return onef-(x+x*y);
            } else {
             r = x*y;
-            r += (x-half);
-               return half - r ;
+            r += (x-halff);
+               return halff - r ;
            }
        }
        if(ix < 0x3fa00000) 
     {  
         /* 0.84375 <= |x| < 1.25 */
-           s = fabs(x)-one;
-           P = pa0+s*(pa1+s*(pa2+s*(pa3+s*(pa4+s*(pa5+s*pa6)))));
-           Q = one+s*(qa1+s*(qa2+s*(qa3+s*(qa4+s*(qa5+s*qa6)))));
+           s = fabs(x)-onef;
+           P = pa0f+s*(pa1f+s*(pa2f+s*(pa3f+s*(pa4f+s*(pa5f+s*pa6f)))));
+           Q = onef+s*(qa1f+s*(qa2f+s*(qa3f+s*(qa4f+s*(qa5f+s*qa6f)))));
            if(hx>=0) {
-               z  = one-erx; return z - P/Q; 
+               z  = onef-erxf; return z - P/Q; 
            } else {
-            z = erx+P/Q; return one+z;
+            z = erxf+P/Q; return onef+z;
            }
        }
        if (ix < 0x41e00000) 
     {
                /* |x|<28 */
         x = fabs(x);
-           s = one/(x*x);
+           s = onef/(x*x);
            if(ix< 0x4036DB6D)
         {
             /* |x| < 1/.35 ~ 2.857143*/
-            R=ra0+s*(ra1+s*(ra2+s*(ra3+s*(ra4+s*(ra5+s*(ra6+s*ra7))))));
-               S=one+s*(sa1+s*(sa2+s*(sa3+s*(sa4+s*(sa5+s*(sa6+s*(sa7+s*sa8)))))));
+                R=ra0f+s*(ra1f+s*(ra2f+s*(ra3f+s*(ra4f+s*(ra5f+s*(ra6f+s*ra7f))))));
+               S=onef+s*(sa1f+s*(sa2f+s*(sa3f+s*(sa4f+s*(sa5f+s*(sa6f+s*(sa7f+s*sa8f)))))));
            } else {            
             /* |x| >= 1/.35 ~ 2.857143 */
-            if(hx<0&&ix>=0x40c00000) return two-tiny;/* x < -6 */
-               R=rb0+s*(rb1+s*(rb2+s*(rb3+s*(rb4+s*(rb5+s*rb6)))));
-               S=one+s*(sb1+s*(sb2+s*(sb3+s*(sb4+s*(sb5+s*(sb6+s*sb7))))));
+            if(hx<0&&ix>=0x40c00000) return twof-tinyf;/* x < -6 */
+               R=rb0f+s*(rb1f+s*(rb2f+s*(rb3f+s*(rb4f+s*(rb5f+s*rb6f)))));
+               S=onef+s*(sb1f+s*(sb2f+s*(sb3f+s*(sb4f+s*(sb5f+s*(sb6f+s*sb7f))))));
            }
         
         conv.f = x;
@@ -641,13 +636,12 @@ float gmx_erfc(float x)
         z = conv.f;
         
            r  =  exp(-z*z-(float)0.5625)*exp((z-x)*(z+x)+R/S);
-           if(hx>0) return r/x; else return two-r/x;
+           if(hx>0) return r/x; else return twof-r/x;
        } else {
-           if(hx>0) return tiny*tiny; else return two-tiny;
+           if(hx>0) return tinyf*tinyf; else return twof-tinyf;
        }
 }
 
-#endif
 
 gmx_bool gmx_isfinite(real x)
 {