"reference molecule. ",
"The Volume of the SDF grid will be V=x*y*z (nm^3). ",
"Use [TT]-bin[tt] to set the binwidth for grid.[PAR]",
- "The output will be a binary 3D-grid file ([TT]gom_plt.dat[tt]) in the [TT].plt[tt] format that can be be",
+ "The output will be a binary 3D-grid file ([TT]gom_plt.dat[tt]) in the [REF].plt[ref] format that can be be",
"read directly by gOpenMol. ",
- "The option [TT]-r[tt] will generate a [TT].gro[tt] file with the reference molecule(s) transferred to",
+ "The option [TT]-r[tt] will generate a [REF].gro[ref] file with the reference molecule(s) transferred to",
"the SDF coordinate system. Load this file into gOpenMol and display the",
"SDF as a contour plot (see http://www.csc.fi/gopenmol/index.phtml for ",
"further documentation). [PAR]",