Clean up some gmxapi sources and tests.

[alexxy/gromacs.git] / python_packaging / src / test / test_fileio.py

diff --git a/python_packaging/src/test/test_fileio.py b/python_packaging/src/test/test_fileio.py
index a1a9d514acd989e5f4066e549e26cc94d4ac38a8..2618464112dd96abb7052653e4d5d9d5f9a4b90e 100644 (file)
--- a/python_packaging/src/test/test_fileio.py
+++ b/python_packaging/src/test/test_fileio.py
@@ -1,7 +1,7 @@
 #
 # This file is part of the GROMACS molecular simulation package.
 #
-# Copyright (c) 2019, by the GROMACS development team, led by
+# Copyright (c) 2019,2021, by the GROMACS development team, led by
 # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
 # and including many others, as listed in the AUTHORS file in the
 # top-level source directory and at http://www.gromacs.org.
@@ -72,37 +72,6 @@ def test_read_tpr(spc_water_box):
     assert tpr_source.output.parameters['nsteps'].result() == 2
 
 
-@pytest.mark.usefixtures('cleandir')
-def test_core_tprcopy_alt(spc_water_box):
-    """Test gmx.core.copy_tprfile() for update of end_time.
-
-    Set a new end time that is 5000 steps later than the original. Read dt
-    from file to avoid floating point round-off errors.
-
-    Transitively test gmx.fileio.read_tpr()
-    """
-    tpr_filename = spc_water_box
-    additional_steps = 5000
-    sim_input = read_tpr(tpr_filename)
-    params = sim_input.parameters.extract()
-    dt = params['dt']
-    nsteps = params['nsteps']
-    init_step = params['init-step']
-    initial_endtime = (init_step + nsteps) * dt
-    new_endtime = initial_endtime + additional_steps*dt
-    _, temp_filename = tempfile.mkstemp(suffix='.tpr')
-    gmxapi._gmxapi.rewrite_tprfile(source=tpr_filename, destination=temp_filename, end_time=new_endtime)
-    tprfile = TprFile(temp_filename, 'r')
-    with tprfile as fh:
-        params = read_tpr(fh).parameters.extract()
-        dt = params['dt']
-        nsteps = params['nsteps']
-        init_step = params['init-step']
-        assert (init_step + nsteps) * dt == new_endtime
-
-    os.unlink(temp_filename)
-
-
 @pytest.mark.usefixtures('cleandir')
 def test_write_tpr_file(spc_water_box):
     """Test gmx.fileio.write_tpr_file() using gmx.core API.