/* This factor leads to 4 realloc calls to double the array size */
#define OVER_ALLOC_FAC 1.19
-void set_over_alloc_dd(bool set);
+void set_over_alloc_dd(gmx_bool set);
/* Turns over allocation for variable size atoms/cg/top arrays on or off,
* default is off.
*/
void done_atom (t_atoms *at);
void done_moltype(gmx_moltype_t *molt);
void done_molblock(gmx_molblock_t *molb);
-void done_mtop(gmx_mtop_t *mtop,bool bDoneSymtab);
+void done_mtop(gmx_mtop_t *mtop,gmx_bool bDoneSymtab);
void done_top(t_topology *top);
void done_inputrec(t_inputrec *ir);
void done_state(t_state *state);
void preserve_box_shape(t_inputrec *ir,matrix box_rel,matrix b);
/* Preserve the box shape, b can be box or boxv */
-void stupid_fill_block(t_block *grp, int natom,bool bOneIndexGroup);
+void stupid_fill_block(t_block *grp, int natom,gmx_bool bOneIndexGroup);
/* Fill a block structure with numbers identical to the index
* (0, 1, 2, .. natom-1)
* If bOneIndexGroup, then all atoms are lumped in one index group,
* There is one atom per index entry
*/
-void init_t_atoms(t_atoms *atoms, int natoms, bool bPdbinfo);
+void init_t_atoms(t_atoms *atoms, int natoms, gmx_bool bPdbinfo);
/* allocate memory for the arrays, set nr to natoms and nres to 0
* set pdbinfo to NULL or allocate memory for it */
* of atom index atom_ind.
*/
-void free_t_atoms(t_atoms *atoms,bool bFreeNames);
+void free_t_atoms(t_atoms *atoms,gmx_bool bFreeNames);
/* Free all the arrays and set the nr and nres to 0.
* bFreeNames tells if to free the atom and residue name strings,
* don't free them if they still need to be used in e.g. the topology struct.