int return_atom_type (const char *name,gmx_structurefactors_t *gsf);
void rearrange_atoms (reduced_atom_t * positions, t_trxframe *fr, atom_id * index,
- int isize, t_topology * top, bool flag,gmx_structurefactors_t *gsf);
+ int isize, t_topology * top, gmx_bool flag,gmx_structurefactors_t *gsf);
int do_scattering_intensity (const char* fnTPS, const char* fnNDX,
const char* fnXVG, const char *fnTRX,