Getting started
===============
+.. toctree::
+ :hidden:
+
+ flow
+
In this chapter we assume the reader is familiar with Molecular Dynamics and
familiar with Unix, including the use of a text editor such as ``jot``, ``emacs``
or ``vi``. We furthermore assume the |Gromacs| software is installed properly on
Flowchart of typical simulation
-------------------------------
-A typical simulation workflow with |Gromacs| is `illustrated here <../online/flow.html>`_.
+A typical simulation workflow with |Gromacs| is :doc:`illustrated here <flow>`.
Important files
---------------