Reorganize files for reference manual

[alexxy/gromacs.git] / docs / reference-manual / algorithms.rst

diff --git a/docs/reference-manual/algorithms.rst b/docs/reference-manual/algorithms.rst
index f262a3f0b4a288e570ba261351d41a64c6f35ec4..a6dd4828093179af9162d3d1d95c84dd4c83f943 100644 (file)
--- a/docs/reference-manual/algorithms.rst
+++ b/docs/reference-manual/algorithms.rst
@@ -24,20 +24,20 @@ generated by an MD simulation is treated in chapter :ref:`analysis`.
 .. toctree::
    :maxdepth: 2
 
-   periodic-boundary-conditions
-   group-concept
-   molecular-dynamics
-   shell-molecular-dynamics
-   constraint-algorithms
-   simulated-annealing
-   stochastic-dynamics
-   brownian-dynamics
-   energy-minimization
-   normal-mode-analysis
-   free-energy-calculations
-   replica-exchange
-   essential-dynamics
-   expanded-ensemble
-   parallelization-domain-decomp
+   algorithms/periodic-boundary-conditions
+   algorithms/group-concept
+   algorithms/molecular-dynamics
+   algorithms/shell-molecular-dynamics
+   algorithms/constraint-algorithms
+   algorithms/simulated-annealing
+   algorithms/stochastic-dynamics
+   algorithms/brownian-dynamics
+   algorithms/energy-minimization
+   algorithms/normal-mode-analysis
+   algorithms/free-energy-calculations
+   algorithms/replica-exchange
+   algorithms/essential-dynamics
+   algorithms/expanded-ensemble
+   algorithms/parallelization-domain-decomp