- .gromacs:base:configure
- .use-clang:base
- .rules:basic-push
- image: gromacs/cmake-3.15.7-llvm-9-openmpi:master
- tags: []
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
variables:
- COMPILER_MAJOR_VERSION: 9
+ CMAKE: /usr/local/cmake-3.16.3/bin/cmake
+ COMPILER_MAJOR_VERSION: 11
BUILD_DIR: build-clang-tidy
CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON -DCMAKE_EXPORT_COMPILE_COMMANDS=ON
- .gromacs:base:configure
- .use-clang:base
- .rules:nightly-not-for-release
- image: gromacs/cmake-3.15.7-llvm-9-openmpi:master
- tags: []
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
variables:
- COMPILER_MAJOR_VERSION: 9
+ CMAKE: /usr/local/cmake-3.16.3/bin/cmake
+ COMPILER_MAJOR_VERSION: 11
BUILD_DIR: build-clang-tidy
CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
+clang-tidy:configure-schedule-cuda:
+ extends:
+ - .gromacs:base:configure
+ - .use-clang:base
+ - .use-cuda
+ - .rules:nightly-not-for-release
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
+ variables:
+ CMAKE: cmake
+ COMPILER_MAJOR_VERSION: 11
+ BUILD_DIR: build-clang-tidy
+ CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON -DGMX_CLANG_CUDA=ON
+
clang-tidy:build:
extends:
- .gromacs:base:build
- .variables:default
- .rules:nightly-not-for-release
stage: source-check
- image: gromacs/cmake-3.15.7-llvm-9-openmpi:master
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
needs:
- job: clang-tidy:configure-schedule
variables:
+ CMAKE: /usr/local/cmake-3.16.3/bin/cmake
+ BUILD_DIR: build-clang-tidy
+
+clang-tidy:build-cuda:
+ extends:
+ - .gromacs:base:build
+ - .use-ccache
+ - .variables:default
+ - .rules:nightly-not-for-release
+ stage: source-check
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
+ needs:
+ - job: clang-tidy:configure-schedule-cuda
+ variables:
+ CMAKE: cmake
BUILD_DIR: build-clang-tidy
clang-tidy:test:
- .variables:default
- .rules:basic-push
stage: source-check
- image: gromacs/cmake-3.15.7-llvm-9-openmpi:master
- tags: []
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
needs:
- job: clang-tidy:configure-push
variables:
- COMPILER_MAJOR_VERSION: 9
+ CMAKE: /usr/local/cmake-3.16.3/bin/cmake
+ COMPILER_MAJOR_VERSION: 11
BUILD_DIR: build-clang-tidy
EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
KUBERNETES_CPU_LIMIT: 4
KUBERNETES_CPU_REQUEST: 2
- KUBERNETES_MEMORY_LIMIT: 4Gi
+ KUBERNETES_MEMORY_REQUEST: 4Gi
script:
+ # Make sure that a Python interpreter can be found for `/bin/env python`
+ - test -x /usr/bin/python || update-alternatives --install /usr/bin/python python /usr/bin/python3 1
# TODO (issue #3272) `master` is not appropriate for use on release-xxxx branches, how should we handle that?
- REV=$(git fetch -q https://gitlab.com/gromacs/gromacs.git master && git show -s --pretty=format:"%h" `git merge-base FETCH_HEAD HEAD`)
- HEAD_REV=$(git show -s --pretty=format:"%h" HEAD)
- echo "Revision used for branch point is $REV"
- git show -s $REV
- RUN_CLANG_TIDY=run-clang-tidy-$COMPILER_MAJOR_VERSION bash admin/clang-tidy.sh check --parallel=$KUBERNETES_CPU_LIMIT --warnings=clang-tidy.log --rev=$REV -B=$BUILD_DIR
- - grep -iq "found code issues" clang-tidy.log | tee code-lint.txt || true
+ - grep -i "found code issues|warnings" clang-tidy.log | tee code-lint.txt || true
- if [ -s code-lint.txt ] ; then echo "clang-tidy.sh found issues"; exit 1; fi
artifacts:
when: on_failure
- .rules:basic-push
cache: {}
stage: pre-build
- image: gromacs/ci-docs-llvm:master
- tags: []
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
variables:
- COMPILER_MAJOR_VERSION: 7
+ COMPILER_MAJOR_VERSION: 11
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
script:
# TODO (issue #3272) `master` is not appropriate for use on release-xxxx branches, how should we handle that?
- echo "Revision used for branch point is $REV"
- git show -s $REV
- CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION admin/clang-format.sh check --rev=$REV --warnings=clang-format.log
- - grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
+ - grep -i "needs formatting" clang-format.log | tee formatting.txt || true
- if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
artifacts:
when: on_failure
- .rules:basic-push
cache: {}
stage: pre-build
- image: gromacs/ci-docs-llvm:master
- tags: []
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-11-cuda-11.4.1
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
script:
- # TODO (issue #3272) `master` is not appropriate for use on release-xxxx branches, how should we handle that?
- REV=$(git fetch -q https://gitlab.com/gromacs/gromacs.git master && git show -s --pretty=format:"%h" `git merge-base FETCH_HEAD HEAD`)
- HEAD_REV=$(git show -s --pretty=format:"%h" HEAD)
- if [[ "$REV" == "$HEAD_REV" ]] ; then
- echo "Revision used for branch point is $REV"
- git show -s $REV
- admin/copyright.sh check --rev=$REV --warnings=copyright.log
- - grep -iq "copyright year" copyright.log | tee years.log || true
- - grep -iq "copyright header" copyright.log | tee headers.log || true
+ - grep -i "copyright year" copyright.log | tee years.log || true
+ - grep -i "copyright header" copyright.log | tee headers.log || true
- if [[ -s years.log || -s headers.log ]] ; then
echo "Copyright information needs updating" ;
exit 1 ;
- .rules:basic-push
cache: {}
stage: source-check
- tags: []
needs:
- job: docs:build
artifacts: true
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
BUILD_DIR: build-docs
script:
+ - CMAKE=${CMAKE:-$(which cmake)}
- cd $BUILD_DIR
- - cmake --build . --target check-source
+ - which $CMAKE
+ - $CMAKE --version
+ - $CMAKE --build . --target check-source
- awk '/warning.*include style.*order/,/You can use.*rst|^$/' docs/doxygen/check-source.log | tee doxygenError.txt || true
+ - awk '/warning:.*includes/,/unnecessarily|^$/' docs/doxygen/check-source.log | tee -a doxygenError.txt || true
- awk '/Traceback/,/.*rror|^$/' docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
- awk '/warning:/,/in doxygen.*|^$/' docs/doxygen/doxygen*log | tee -a doxygenError.txt || true
+ - grep -i "unused cycle suppression" docs/doxygen/check-source.log | tee -a doxygenError.txt || true
- if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
artifacts:
name: docs-artifacts-$CI_COMMIT_REF_SLUG
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
BUILD_DIR: build-docs
script:
- cd $BUILD_DIR