# Build documentation and web page.
-.documentation-before-script-template:
- variables:
- EXTRA_INSTALLS: ""
-
- before_script:
- - echo $EXTRA_INSTALLS
- - time apt-get -qq update
- - time apt-get -qqy --no-install-suggests --no-install-recommends install
- $EXTRA_INSTALLS
- - mkdir -p ccache
- - export CCACHE_BASEDIR=${PWD}
- - export CCACHE_DIR=${PWD}/ccache
-.configure-docs-template:
- # Built by admin/dockerfiles/ci-docs-clang
- # TODO this should be organized more like the current documentation.py script
- image: gromacs/ci-docs-clang:master
+.docs:configure:
+ extends:
+ - .variables:default
+ - .gromacs:base:configure
+ - .before_script:default
+ # TODO (#3480) this should be organized more like the current documentation.py script
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-7-docs
stage: configure-build
+ cache: {}
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
CMAKE_COMPILER_SCRIPT: "-DCMAKE_C_COMPILER=clang-7 -DCMAKE_CXX_COMPILER=clang++-7"
- CMAKE_EXTRA_OPTIONS: ""
CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=OFF"
CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
- CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
-
+ CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=ON"
script:
- if [[ ! -z $GROMACS_RELEASE && $GROMACS_RELEASE == "true" ]] ; then
REL_OPTION="-DGMX_BUILD_TARBALL=ON" ;
mkdir $BUILD_DIR ;
fi
- cd $BUILD_DIR
+ # Running CMake with the venv activated should not be strictly necessary,
+ # but helps to find and cache self-consistent Python and Sphinx details
+ # without additional hinting. Once CMakeCache.txt exists, the later stages
+ # should work fine without reactivating the venv.
+ - source /root/venv/py3.7/bin/activate
- cmake ..
-DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
$CMAKE_COMPILER_SCRIPT
paths:
- $BUILD_DIR
-.configure-docs-release-template:
- # Built by admin/dockerfiles/ci-docs-clang
- # TODO this should be organized more like the current documentation.py script
- image: gromacs/ci-docs-clang:master
+.docs:configure:release:
+ extends:
+ - .variables:default
+ - .gromacs:base:configure
+ - .before_script:default
+ - .rules:nightly-only-for-release
+ # TODO (#3480) this should be organized more like the current documentation.py script
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-7-docs
stage: release-configure
+ cache: {}
variables:
KUBERNETES_CPU_LIMIT: 1
KUBERNETES_CPU_REQUEST: 1
- KUBERNETES_MEMORY_LIMIT: 2Gi
+ KUBERNETES_MEMORY_REQUEST: 2Gi
CMAKE_COMPILER_SCRIPT: "-DCMAKE_C_COMPILER=clang-7 -DCMAKE_CXX_COMPILER=clang++-7"
- CMAKE_EXTRA_OPTIONS: ""
CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=None"
CMAKE_MPI_OPTIONS: "-DGMX_THREAD_MPI=ON"
CMAKE_PRECISION_OPTIONS: "-DGMX_DOUBLE=OFF"
CMAKE_BUILD_TYPE_OPTIONS: "-DCMAKE_BUILD_TYPE=Debug"
CMAKE_GPU_OPTIONS: "-DGMX_GPU=OFF"
- CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=OFF"
+ CMAKE_GMXAPI_OPTIONS: "-DGMX_PYTHON_PACKAGE=ON"
RELEASE_BUILD_DIR: release-doc-builds
RELEASE_SOURCE: release-source-from-tarball
RELEASE_REGRESSIONTESTS: release-regressiontests-from-tarball
-
- only:
- refs:
- - web
- - schedules
- - triggers
- variables:
- - $GROMACS_RELEASE
script:
- if [[ $GROMACS_RELEASE == "true" ]] ; then
REL_OPTION="-DGMX_BUILD_TARBALL=ON" ;
- echo $CMAKE_BUILD_TYPE_OPTIONS
- echo $CMAKE_GMXAPI_OPTIONS
- echo $REL_OPTION
- - VERSION=`cat version.json |
- python3 -c "import json,sys; print(json.load(sys.stdin)['version'])"`
+ - VERSION=`sed -n -e '/GMX_VERSION_STRING\b/ s/.*"\(.*\)")/\1/p' VersionInfo-partial.cmake.cmakein`
- if [[ $GROMACS_RELEASE != "true" ]] ; then
VERSION=$VERSION-dev ;
fi
- - REGTEST_COMPARE=`cat version.json |
- python3 -c "import json,sys; print(json.load(sys.stdin)['regressiontest-md5sum'])"`
+ - REGTEST_COMPARE=`sed -n -e '/REGRESSIONTEST_MD5SUM/ s/.*"\(.*\)")/\1/p' VersionInfo-partial.cmake.cmakein`
- SOURCENAME=gromacs-$VERSION
- SOURCETARBALL=$SOURCENAME.tar.gz
- REGTESTNAME=regressiontests-$VERSION
mkdir $RELEASE_BUILD_DIR ;
fi
- cd $RELEASE_BUILD_DIR
+ - source /root/venv/py3.7/bin/activate
- cmake ../$RELEASE_SOURCE/
-DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER_LAUNCHER=ccache
$CMAKE_COMPILER_SCRIPT
- $RELEASE_REGRESSIONTESTS
- $RELEASE_SOURCE
-.configure-docs:
+docs:configure:
extends:
- - .gromacs:base:configure
- - .configure-docs-template
- - .documentation-before-script-template
-
-.configure-docs-release:
- extends:
- - .gromacs:base:configure
- - .configure-docs-release-template
- - .documentation-before-script-template
- cache: {}
-
-configure-docs:
- extends:
- - .configure-docs
- needs:
- - job: simple-build
- artifacts: false
+ - .docs:configure
+ - .rules:basic-push
variables:
BUILD_DIR: build-docs
- CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
- except:
- variables:
- - $GROMACS_RELEASE
-
-configure-docs-gmxapi:
- extends:
- - .configure-docs
- - .configure-gmxapi-template
- needs:
- - job: simple-build
- artifacts: false
- variables:
- BUILD_DIR: build-docs-gmxapi
- CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
- except:
- variables:
- - $GROMACS_RELEASE
+ CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on -DGMX_USE_SIMD_KERNELS=off
-.build-docs-binary-template:
- # Built by admin/dockerfiles/ci-docs-clang
- # TODO this should be organized more like the current documentation.py script
- image: gromacs/ci-docs-clang:master
+.docs:build:
+ # TODO (#3480) this should be organized more like the current documentation.py script
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-7-docs
script:
- cd $BUILD_DIR
- cmake --build . --target gmx -- -j8
paths:
- $BUILD_DIR
-.build-docs-webpage-template:
- # Built by admin/dockerfiles/ci-docs-clang
- # TODO this should be organized more like the current documentation.py script
- image: gromacs/ci-docs-clang:master
+docs:build:
+ extends:
+ - .variables:default
+ - .gromacs:base:build
+ - .use-ccache
+ - .docs:build
+ - .before_script:default
+ - .rules:basic-push
+ stage: documentation
+ needs:
+ - job: docs:configure
+ variables:
+ BUILD_DIR: build-docs
+
+# The manual build is built separately so that errors in converting
+# Sphinx to LaTeX and compiling can always be found in the
+# all-output.txt file, while avoiding many thousands of lines of spam
+# from pdflatex for normal builds. This does reduce the available
+# parallel utilization, and so increases the build time.
+#
+# TODO why are the doxygen and sphinx log files disappearing
+# TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
+.webpage:build:
+ extends:
+ - .variables:default
+ - .gromacs:base:build
+ - .before_script:default
+ # TODO (#3480) this should be organized more like the current documentation.py script
+ image: ${CI_REGISTRY}/gromacs/gromacs/ci-ubuntu-20.04-llvm-7-docs
+ cache: {}
variables:
KUBERNETES_CPU_LIMIT: 4
KUBERNETES_CPU_REQUEST: 2
- KUBERNETES_MEMORY_LIMIT: 4Gi
+ KUBERNETES_MEMORY_REQUEST: 4Gi
script:
- cd $BUILD_DIR
- cmake --build . --target manual -- -j4 | tee docs/manual/all-output.log
- $BUILD_DIR/docs/doxygen/doxygen-full.log
- $BUILD_DIR/docs/sphinx-html.log
-.build-docs-binary:
- extends:
- - .gromacs:base:build
- - .use-ccache
- - .variables:default
- - .use-ccache
- - .build-docs-binary-template
- - .documentation-before-script-template
-
-.build-docs-webpage:
- extends:
- - .gromacs:base:build
- - .variables:default
- - .build-docs-webpage-template
- - .documentation-before-script-template
-
-build-docs:
- extends:
- - .build-docs-binary
- stage: documentation
- needs:
- - job: simple-build
- artifacts: false
- - job: configure-docs
- artifacts: true
- variables:
- BUILD_DIR: build-docs
- except:
- variables:
- - $GROMACS_RELEASE
-
-build-docs-gmxapi:
- extends:
- - .build-docs-binary
- - .gmxapi-extra-installs
- stage: documentation
- needs:
- - job: simple-build
- artifacts: false
- - job: configure-docs-gmxapi
- artifacts: true
- variables:
- BUILD_DIR: build-docs-gmxapi
- except:
- variables:
- - $GROMACS_RELEASE
-
-
-# The manual build is built separately so that errors in converting
-# Sphinx to LaTeX and compiling can always be found in the
-# all-output.txt file, while avoiding many thousands of lines of spam
-# from pdflatex for normal builds. This does reduce the available
-# parallel utilization, and so increases the build time.
-#
-# TODO why are the doxygen and sphinx log files disappearing
-# TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
-webpage:
+webpage:build:
extends:
- - .build-docs-webpage
+ - .webpage:build
+ - .rules:basic-push
stage: post-test
needs:
- - job: build-docs
- artifacts: true
- - job: run-check-source
+ - job: docs:build
+ - job: check-source
artifacts: false
variables:
BUILD_DIR: build-docs
- except:
- variables:
- - $GROMACS_RELEASE
-webpage-gmxapi:
+webpage:configure:
extends:
- - .build-docs-webpage
- - .gmxapi-extra-installs
- stage: post-test
- needs:
- - job: build-docs-gmxapi
- artifacts: true
- - job: run-check-source
- artifacts: false
- variables:
- BUILD_DIR: build-docs-gmxapi
- except:
- variables:
- - $GROMACS_RELEASE
-
-webpage-nightly:
- extends:
- - .build-docs-webpage
- - .configure-gmxapi-template
- stage: nightly-deploy
- only:
- - triggers
- - schedules
- except:
- variables:
- - $GROMACS_RELEASE
- needs:
- - job: simple-build
- artifacts: false
- - job: linkchecker
- artifacts: false
- - job: webpage-gmxapi
- artifacts: true
- variables:
- BUILD_DIR: build-docs-gmxapi
- script:
- - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
- artifacts:
- when: always
- paths:
- - webpage.tar.gz
-
-webpage-configure-release:
- extends:
- - .configure-docs-release
- - .configure-gmxapi-template
+ - .docs:configure:release
+ - .rules:nightly-only-for-release
cache: {}
- only:
- refs:
- - web
- - schedules
- - triggers
- variables:
- - $GROMACS_RELEASE
+ tags:
+ - k8s-scilifelab
dependencies:
- - package-archive-release
- - package-regressiontests-release
+ - archive:package
+ - regressiontests:package
- prepare-release-version
variables:
- CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
+ CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on -DGMX_USE_SIMD_KERNELS=off
-webpage-binary-release:
+webpage:dependencies:
extends:
- - .build-docs-binary
- - .gmxapi-extra-installs
+ - .gromacs:base:build
+ - .variables:default
+ - .use-ccache
+ - .docs:build
+ - .before_script:default
+ - .rules:nightly-only-for-release
stage: release-build
+ tags:
+ - k8s-scilifelab
needs:
- - job: webpage-configure-release
- artifacts: true
+ - job: webpage:configure
variables:
BUILD_DIR: release-doc-builds
- only:
- refs:
- - triggers
- - web
- - schedules
- variables:
- - $GROMACS_RELEASE
-webpage-build-release:
+webpage:build:release:
extends:
- - .build-docs-webpage
- - .configure-gmxapi-template
- dependencies:
- - webpage-binary-release
- - webpage-configure-release
+ - .webpage:build
+ - .rules:nightly-only-for-release
stage: release-prepare-deploy
- only:
- refs:
- - web
- - schedules
- - triggers
- variables:
- - $GROMACS_RELEASE
+ tags:
+ - k8s-scilifelab
+ dependencies:
+ - webpage:dependencies
+ - webpage:configure
variables:
BUILD_DIR: release-doc-builds
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff