cmdlinerunner.cpp: use ICommandLineOptionsModule

[alexxy/gromacs.git] / COPYING

diff --git a/COPYING b/COPYING
index dddffe127ded8cb5974072599aaeb7641c571e4a..7d7b8dda2ab5a98e5dbe60f27c46651d14363106 100644 (file)
--- a/COPYING
+++ b/COPYING
@@ -20,6 +20,7 @@ This file contains the licenses for the following bodies of code:
 10. Sun FDLIBM (Freely Distributable Maths Library)
 11. Random123
 12. md5
+13. lmfit
 
 Our chosen method for packaging distributions (CPack) only permits a
 package to have a single license file, so we are unfortunately forced
@@ -1004,7 +1005,7 @@ be called official thread_mpi.
 
 These files are semi-automatic translations by f2c from the original netlib BLAS library.
 The source has been modified to (mostly) use modern C formatting, and to get rid of
-compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and
+compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
 not the reference BLAS implementation.
 
 The reference BLAS implementation is available from http://www.netlib.org/blas
@@ -1015,10 +1016,10 @@ BLAS does not come with a formal named "license", but a general statement that
 via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
 packages (and has been). We only ask that proper credit be given to the authors."
 
-While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to
+While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
 our modified BLAS files as the original netlib versions, so do what you want with them.
 However, be warned that we have only tested that they to the right thing in the cases used
-in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much
+in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
 better idea to use the full reference implementation.
 
 Erik Lindahl, 2008-10-07.
@@ -1028,7 +1029,7 @@ Erik Lindahl, 2008-10-07.
 
 These files are semi-automatic translations by f2c from the original netlib LAPACK library.
 The source has been modified to (mostly) use modern C formatting, and to get rid of
-compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and
+compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
 not the reference LAPACK implementation.
 
 The reference LAPACK implementation is available from http://www.netlib.org/lapack
@@ -1039,11 +1040,11 @@ LAPACK does not come with a formal named "license", but a general statement sayi
 via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
 packages (and has been). We only ask that proper credit be given to the authors."
 
-While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to
+While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
 our modified LAPACK files as the original netlib versions, so do what you want with them.
 
 However, be warned that we have only tested that they to the right thing in the cases used
-in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much
+in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
 better idea to use the full reference implementation.
 
 Erik Lindahl, 2008-10-07.
@@ -1215,3 +1216,36 @@ freely, subject to the following restrictions:
 
 L. Peter Deutsch
 ghost@aladdin.com
+
+13. lmfit
+============================================
+The package lmfit is distributed under the FreeBSD License:
+
+--
+  Copyright (c) 1980-1999 University of Chicago,
+                          as operator of Argonne National Laboratory
+  Copyright (c) 2004-2013 Joachim Wuttke, Forschungszentrum Juelich GmbH
+
+  All rights reserved.
+
+  Redistribution and use in source and binary forms, with or without
+  modification, are permitted provided that the following conditions are met:
+
+  - Redistributions of source code must retain the above copyright notice,
+    this list of conditions and the following disclaimer.
+  - Redistributions in binary form must reproduce the above copyright notice,
+    this list of conditions and the following disclaimer in the documentation
+    and/or other materials provided with the distribution.
+
+  This software is provided by the copyright holders and contributors "as is"
+  and any express or implied warranties, including, but not limited to, the
+  implied warranties of merchantability and fitness for a particular purpose
+  are disclaimed. In no event shall the copyright holder or contributors
+  be liable for any direct, indirect, incidental, special, exemplary, or
+  consequential damages (including, but not limited to, procurement of
+  substitute goods or services; loss of use, data, or profits; or business
+  interruption) however caused and on any theory of liability, whether in
+  contract, strict liability, or tort (including negligence or otherwise)
+  arising in any way out of the use of this software, even if advised of the
+  possibility of such damage.
+--