1. GROMACS
2. Trajectory file reading using VMD plugins
3. Internal FFT (fftpack)
-4. The memtestG80 library
-5. thread_mpi
-6. Blas
-7. Lapack
-8. Subset of Boost C++ library
-9. Google Test and Google Mock
-10. Sun XDR implementation (External Data Representation)
-11. Sun FDLIBM (Freely Distributable Maths Library)
+4. thread_mpi
+5. Blas
+6. Lapack
+7. Subset of Boost C++ library
+8. Google Test and Google Mock
+9. Sun XDR implementation (External Data Representation)
+10. Sun FDLIBM (Freely Distributable Maths Library)
+11. Random123
+12. md5
+13. lmfit
Our chosen method for packaging distributions (CPack) only permits a
package to have a single license file, so we are unfortunately forced
fftpack.c : A set of FFT routines in C.
Algorithmically based on Fortran-77 FFTPACK by Paul N. Swarztrauber (Version 4, 1985).
-4. The memtestG80 library
-=========================
-
- Files: src/gromacs/gmxlib/gpu_utils/memtestG80_core.*
-
-The memtestG80 library, written by Imran Haque, is Copyright 2009 Stanford University,
-covered by the LGPL license. It may be used under the following terms:
-
-IN NO EVENT SHALL STANFORD UNIVERSITY BE LIABLE TO ANY PARTY FOR DIRECT, INDIRECT,
-SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF
-THE USE OF THIS SOFTWARE AND ITS DOCUMENTATION, EVEN IF STANFORD UNIVERSITY HAS BEEN
-ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-STANFORD UNIVERSITY SPECIFICALLY DISCLAIMS ANY WARRANTIES, INCLUDING, BUT NOT LIMITED
-TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
-THE SOFTWARE AND ACCOMPANYING DOCUMENTATION PROVIDED HEREUNDER IS PROVIDED "AS IS".
-Folding@home HAS NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS,
-OR MODIFICATIONS.
-
-Restrictions:
-
-You may use this software on a computer system only if you own the system or have the
-written permission of the owner.
-
-You may not alter the software or associated data files.
-
-Certain builds of this software incorporate by linkage code from the libintl
-and libiconv libraries, which are covered by the Library GNU Public License,
-available at http://www.gnu.org/licenses/lgpl-3.0.txt.
-
-5. thread_mpi
+4. thread_mpi
=============
Files: src/external/thread_mpi/
inclusion in the official distribution, but derived work should not
be called official thread_mpi.
-6. Blas
+5. Blas
=======
These files are semi-automatic translations by f2c from the original netlib BLAS library.
The source has been modified to (mostly) use modern C formatting, and to get rid of
-compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and
+compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
not the reference BLAS implementation.
The reference BLAS implementation is available from http://www.netlib.org/blas
via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
packages (and has been). We only ask that proper credit be given to the authors."
-While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to
+While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
our modified BLAS files as the original netlib versions, so do what you want with them.
However, be warned that we have only tested that they to the right thing in the cases used
-in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much
+in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
better idea to use the full reference implementation.
Erik Lindahl, 2008-10-07.
-7. Lapack
+6. Lapack
=========
These files are semi-automatic translations by f2c from the original netlib LAPACK library.
The source has been modified to (mostly) use modern C formatting, and to get rid of
-compiler warnings. Any errors in doing this should be blamed on the Gromacs developers, and
+compiler warnings. Any errors in doing this should be blamed on the GROMACS developers, and
not the reference LAPACK implementation.
The reference LAPACK implementation is available from http://www.netlib.org/lapack
via anonymous ftp and the World Wide Web. Thus, it can be included in commercial software
packages (and has been). We only ask that proper credit be given to the authors."
-While the rest of Gromacs is LGPL, we think it's only fair to give you the same rights to
+While the rest of GROMACS is LGPL, we think it's only fair to give you the same rights to
our modified LAPACK files as the original netlib versions, so do what you want with them.
However, be warned that we have only tested that they to the right thing in the cases used
-in Gromacs (primarily full & sparse matrix diagonalization), so in most cases it is a much
+in GROMACS (primarily full & sparse matrix diagonalization), so in most cases it is a much
better idea to use the full reference implementation.
Erik Lindahl, 2008-10-07.
-8. Subset of Boost C++ library
+7. Subset of Boost C++ library
==============================
Files: src/external/boost/boost/*
ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
DEALINGS IN THE SOFTWARE.
-9. Google Test and Google Mock
+8. Google Test and Google Mock
===============================
Files: src/external/gmock-1.7.0/*
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-10. Sun Extensible Data Representation routines (XDR)
+9. Sun Extensible Data Representation routines (XDR)
=====================================================
Files: src/gromacs/fileio/gmx_system_xdr.c
Mountain View, California 94043
-11. Sun FDLIBM (Freely Distributable Maths Library)
+10. Sun FDLIBM (Freely Distributable Maths Library)
===================================================
Files: src/gromacs/math/utilities.c
Permission to use, copy, modify, and distribute this
software is freely granted, provided that this notice
is preserved.
+
+
+11. Random123
+============================================
+
+Copyright 2010-2012, D. E. Shaw Research.
+All rights reserved.
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are
+met:
+
+* Redistributions of source code must retain the above copyright
+ notice, this list of conditions, and the following disclaimer.
+
+* Redistributions in binary form must reproduce the above copyright
+ notice, this list of conditions, and the following disclaimer in the
+ documentation and/or other materials provided with the distribution.
+
+* Neither the name of D. E. Shaw Research nor the names of its
+ contributors may be used to endorse or promote products derived from
+ this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
+"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
+LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR
+A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT
+OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL,
+SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
+LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
+DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
+THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+
+12. md5
+============================================
+
+Copyright (C) 1999, 2002 Aladdin Enterprises. All rights reserved.
+
+This software is provided 'as-is', without any express or implied
+warranty. In no event will the authors be held liable for any damages
+arising from the use of this software.
+
+Permission is granted to anyone to use this software for any purpose,
+including commercial applications, and to alter it and redistribute it
+freely, subject to the following restrictions:
+
+1. The origin of this software must not be misrepresented; you must not
+ claim that you wrote the original software. If you use this software
+ in a product, an acknowledgment in the product documentation would be
+ appreciated but is not required.
+2. Altered source versions must be plainly marked as such, and must not be
+ misrepresented as being the original software.
+3. This notice may not be removed or altered from any source distribution.
+
+L. Peter Deutsch
+ghost@aladdin.com
+
+13. lmfit
+============================================
+The package lmfit is distributed under the FreeBSD License:
+
+--
+ Copyright (c) 1980-1999 University of Chicago,
+ as operator of Argonne National Laboratory
+ Copyright (c) 2004-2013 Joachim Wuttke, Forschungszentrum Juelich GmbH
+
+ All rights reserved.
+
+ Redistribution and use in source and binary forms, with or without
+ modification, are permitted provided that the following conditions are met:
+
+ - Redistributions of source code must retain the above copyright notice,
+ this list of conditions and the following disclaimer.
+ - Redistributions in binary form must reproduce the above copyright notice,
+ this list of conditions and the following disclaimer in the documentation
+ and/or other materials provided with the distribution.
+
+ This software is provided by the copyright holders and contributors "as is"
+ and any express or implied warranties, including, but not limited to, the
+ implied warranties of merchantability and fitness for a particular purpose
+ are disclaimed. In no event shall the copyright holder or contributors
+ be liable for any direct, indirect, incidental, special, exemplary, or
+ consequential damages (including, but not limited to, procurement of
+ substitute goods or services; loss of use, data, or profits; or business
+ interruption) however caused and on any theory of liability, whether in
+ contract, strict liability, or tort (including negligence or otherwise)
+ arising in any way out of the use of this software, even if advised of the
+ possibility of such damage.
+--
biod.pnpi.spb.ru / alexxy / gromacs.git / blobdiff