- cptFileName = fileManager_.getTemporaryFilePath(".cpt");
- groOutputFileName = fileManager_.getTemporaryFilePath(".gro");
- swapFileName = fileManager_.getTemporaryFilePath("swap.xvg");
+ runner_.cptFileName_ = fileManager_.getTemporaryFilePath(".cpt");
+ runner_.groOutputFileName_ = fileManager_.getTemporaryFilePath(".gro");
+ runner_.swapFileName_ = fileManager_.getTemporaryFilePath("swap.xvg");