- "[THISMODULE] reads a trajectory ([TT].trj[tt], [TT].trr[tt] or ",
- "[TT].xtc[tt]), an energy file ([TT].ene[tt] or [TT].edr[tt])",
+ "[THISMODULE] reads a trajectory ([TT].tng[tt], [TT].trr[tt] or ",
+ "[TT].xtc[tt]), an energy file ([TT].edr[tt])",
"or an index file ([TT].ndx[tt])",
"and prints out useful information about them.[PAR]",
"Option [TT]-c[tt] checks for presence of coordinates,",
"or an index file ([TT].ndx[tt])",
"and prints out useful information about them.[PAR]",
"Option [TT]-c[tt] checks for presence of coordinates,",
"file are indeed correct in the trajectory. If not you may have",
"non-matching files due to e.g. deshuffling or due to problems with",
"virtual sites. With these flags, [TT]gmx check[tt] provides a quick check for such problems.[PAR]",
"file are indeed correct in the trajectory. If not you may have",
"non-matching files due to e.g. deshuffling or due to problems with",
"virtual sites. With these flags, [TT]gmx check[tt] provides a quick check for such problems.[PAR]",
"when both [TT]-s1[tt] and [TT]-s2[tt] are supplied.",
"Similarly a pair of trajectory files can be compared (using the [TT]-f2[tt]",
"option), or a pair of energy files (using the [TT]-e2[tt] option).[PAR]",
"when both [TT]-s1[tt] and [TT]-s2[tt] are supplied.",
"Similarly a pair of trajectory files can be compared (using the [TT]-f2[tt]",
"option), or a pair of energy files (using the [TT]-e2[tt] option).[PAR]",
t_filenm fnm[] = {
{ efTRX, "-f", NULL, ffOPTRD },
{ efTRX, "-f2", NULL, ffOPTRD },
t_filenm fnm[] = {
{ efTRX, "-f", NULL, ffOPTRD },
{ efTRX, "-f2", NULL, ffOPTRD },
- { efTPX, "-s1", "top1", ffOPTRD },
- { efTPX, "-s2", "top2", ffOPTRD },
+ { efTPR, "-s1", "top1", ffOPTRD },
+ { efTPR, "-s2", "top2", ffOPTRD },
{ efTPS, "-c", NULL, ffOPTRD },
{ efEDR, "-e", NULL, ffOPTRD },
{ efEDR, "-e2", "ener2", ffOPTRD },
{ efTPS, "-c", NULL, ffOPTRD },
{ efEDR, "-e", NULL, ffOPTRD },
{ efEDR, "-e2", "ener2", ffOPTRD },