# # This file is part of the GROMACS molecular simulation package. # # Copyright (c) 2012,2013,2014,2015,2016 by the GROMACS development team. # Copyright (c) 2019,2020,2021, by the GROMACS development team, led by # Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl, # and including many others, as listed in the AUTHORS file in the # top-level source directory and at http://www.gromacs.org. # # GROMACS is free software; you can redistribute it and/or # modify it under the terms of the GNU Lesser General Public License # as published by the Free Software Foundation; either version 2.1 # of the License, or (at your option) any later version. # # GROMACS is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # Lesser General Public License for more details. # # You should have received a copy of the GNU Lesser General Public # License along with GROMACS; if not, see # http://www.gnu.org/licenses, or write to the Free Software Foundation, # Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA. # # If you want to redistribute modifications to GROMACS, please # consider that scientific software is very special. Version # control is crucial - bugs must be traceable. We will be happy to # consider code for inclusion in the official distribution, but # derived work must not be called official GROMACS. Details are found # in the README & COPYING files - if they are missing, get the # official version at http://www.gromacs.org. # # To help us fund GROMACS development, we humbly ask that you cite # the research papers on the package. Check out http://www.gromacs.org. if (GMX_MPI) if (GMX_THREAD_MPI) message(STATUS "MPI is not compatible with thread-MPI. Disabling thread-MPI.") set(GMX_THREAD_MPI OFF CACHE BOOL "Build a thread-MPI-based multithreaded version of GROMACS (not compatible with MPI)" FORCE) endif () set(GMX_LIB_MPI 1) else () set(GMX_LIB_MPI 0) endif () # Manage the MPI setup. # Note that we may want to execute tests or Python with MPI, # even if we are not using an MPI-enabled GROMACS build. set(MPI_DETERMINE_LIBRARY_VERSION TRUE) set(GMX_REQUIRED_MPI_COMPONENTS) if (GMX_LIB_MPI OR GMXAPI) # If we are building GROMACS against an MPI library, we need the CXX component. # If the gmxapi interfaces are to be installed, we want to try to help client # software to find a compatible MPI toolchain, regardless of the libgromacs configuration. list(APPEND GMX_REQUIRED_MPI_COMPONENTS "CXX") endif () if (GMX_LIB_MPI AND GMX_CP2K) list(APPEND GMX_REQUIRED_MPI_COMPONENTS "Fortran") endif () # We don't require MPI components here because we report errors elsewhere # when we can't find a required component, and the MPI target is optional # in some build configurations (e.g. thread-MPI gmxapi installations). if (MPI_ALREADY_SEARCHED) set(MPI_FIND_QUIETLY ON) endif() find_package(MPI COMPONENTS ${GMX_REQUIRED_MPI_COMPONENTS}) set(MPI_ALREADY_SEARCHED TRUE CACHE BOOL "True if a search for MPI has already been done") mark_as_advanced(MPI_ALREADY_SEARCHED) if (GMX_LIB_MPI) if (NOT MPI_CXX_FOUND) message(FATAL_ERROR "MPI support requested, but no suitable MPI compiler found. Either set the " "MPI_CXX_COMPILER to the MPI compiler wrapper (often called mpicxx or mpic++), " "set CMAKE_CXX_COMPILER to a default-MPI-enabled compiler, " "or set the variables reported missing for MPI_CXX above.") elseif (MPI_CXX_VERSION VERSION_LESS 2.0) message(FATAL_ERROR "MPI version 2.0 or higher is required. Please update your MPI library.") endif () #TODO(#3672, #3776): These should be acquired through the MPI::MPI_CXX target. include_directories(SYSTEM ${MPI_CXX_INCLUDE_PATH}) list(APPEND GMX_COMMON_LIBRARIES ${MPI_CXX_LIBRARIES}) endif () # Identify particular MPI implementations of interest (for compatibility checks). if (MPI_CXX_FOUND) string(REGEX MATCH ".*Open MPI[:]? [v]?\([0-9]+\\.[0-9]*\\.?[0-9]*\).*" _openmpi_version ${MPI_CXX_LIBRARY_VERSION_STRING}) if (_openmpi_version) string(REGEX REPLACE ".*Open MPI[:]? [v]?\([0-9]+\\.[0-9]*\\.?[0-9]*\).*" "\\1" OPENMPI_VERSION ${_openmpi_version}) endif () string(REGEX MATCH ".*MVAPICH2[:]? [v]?\([0-9]+\\.[0-9]*[a-z]?\\.?[0-9]*\).*" _mvapich2_version ${MPI_CXX_LIBRARY_VERSION_STRING}) if (_mvapich2_version) string(REGEX REPLACE ".*MVAPICH2[:]? [v]?\([0-9]+\\.[0-9]*[a-z]?\\.?[0-9]*\).*" "\\1" MVAPICH2_VERSION ${_mvapich2_version}) endif () unset(_mvapich2_version) unset(_openmpi_version) endif () # Test for and warn about unsuitable OpenMPI versions. # TODO(#4093): Update tests with respect to required (compatible) OpenMPI versions. if (GMX_LIB_MPI AND OPENMPI_VERSION) if (OPENMPI_VERSION VERSION_LESS "1.4.1") MESSAGE(WARNING "CMake found OpenMPI version ${OPENMPI_VERSION} on your system. " "There are known problems with GROMACS and OpenMPI version < 1.4.1. " "Please consider updating your OpenMPI if your MPI wrapper compilers " "are using the above OpenMPI version.") endif () if (OPENMPI_VERSION VERSION_EQUAL "1.8.6") MESSAGE(WARNING "CMake found OpenMPI version ${OPENMPI_VERSION} on your system. " "This OpenMPI version is known to leak memory with GROMACS," "please update to a more recent version. ") endif () if (NOT MPI_FIND_QUIETLY) MESSAGE(STATUS "GROMACS library will use OpenMPI ${OPENMPI_VERSION}") endif () endif () # Test for and warn about unsuitable MPVAPICH2 versions # TODO(#4093): Update tests with respect to required (compatible) MVAPICH2 versions. if (GMX_LIB_MPI AND MVAPICH2_VERSION) if (MVAPICH2_VERSION VERSION_LESS "1.5") # This test works correctly even with 1.5a1 MESSAGE(WARNING "CMake found MVAPICH2 version ${MVAPICH2_VERSION} on your system. " "There are known problems with GROMACS and MVAPICH2 version < 1.5. " "Please consider updating your MVAPICH2 if your MPI wrapper compilers " "are using the above MVAPICH2 version.") endif () if (NOT MPI_FIND_QUIETLY) MESSAGE(STATUS "GROMACS library will use MVAPICH2 ${MVAPICH2_VERSION}") endif () endif () # Look for MPI process launchers that may be missed, especially if we didn't # need to find the full MPI library build system support. if (NOT MPIEXEC_EXECUTABLE) find_program(MPIEXEC NAMES mpiexec mpirun lamexec srun aprun poe HINTS ${MPI_HOME} $ENV{MPI_HOME} PATH_SUFFIXES bin DOC "Executable for running MPI programs.") set(MPIEXEC_EXECUTABLE "$MPIEXEC") set(MPIEXEC_NUMPROC_FLAG "-np" CACHE STRING "Flag used by MPI to specify the number of processes for MPIEXEC; the next option will be the number of processes.") set(MPIEXEC_PREFLAGS "" CACHE STRING "These flags will be directly before the executable that is being run by MPIEXEC.") set(MPIEXEC_POSTFLAGS "" CACHE STRING "These flags will come after all flags given to MPIEXEC.") set(MPIEXEC_MAX_NUMPROCS "2" CACHE STRING "Maximum number of processors available to run MPI applications.") mark_as_advanced(MPIEXEC MPIEXEC_NUMPROC_FLAG MPIEXEC_PREFLAGS MPIEXEC_POSTFLAGS MPIEXEC_MAX_NUMPROCS) endif ()