# Repository cleanliness. Source tidiness, linting, and policy compliance.

configure-clang-tidy:
  extends:
    - .gromacs:base:configure
    - .use-clang7
  needs:
    - job: simple-build
      artifacts: false
  variables:
    BUILD_DIR: build-clang-tidy
    CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
    EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE

build-clang-tidy:
  extends:
    - .gromacs:base:build
    - .use-ccache
    - .variables:default
    - .use-clang7
  stage: source-check
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-tidy
      artifacts: true
  variables:
    BUILD_DIR: build-clang-tidy
    EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE

run-clang-format:
  extends:
    - .gromacs:base:build
    - .variables:default
    - .use-clang7
  cache: {}
  stage: source-check
  when: always
  needs:
    - job: simple-build
      artifacts: false
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - export CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION
    - admin/clang-format.sh check --rev=HEAD^ --warnings=clang-format.log
    - grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
    - if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
  artifacts:
    when: on_failure
    paths:
      - clang-format.log
      - formatting.txt

run-copyright-check:
  extends:
    - .gromacs:base:build
    - .variables:default
    - .use-clang7
  cache: {}
  stage: source-check
  when: always
  needs:
    - job: simple-build
      artifacts: false
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - admin/copyright.sh check --rev=HEAD^ --warnings=copyright.log
    - grep -iq "copyright year" copyright.log | tee years.log || true
    - grep -iq "copyright header" copyright.log | tee headers.log || true
    - if [[ -s years.log || -s headers.log ]] ; then
      echo "Copyright information needs updating" ;
      exit 1 ;
      fi
  artifacts:
    when: on_failure
    paths:
      - copyright.log
      - years.log
      - headers.log

run-check-source:
  extends:
    - .variables:default
    - .build-docs-binary-template
    - .documentation-before-script-template
  cache: {}
  stage: source-check
  needs:
    - job: simple-build
      artifacts: false
    - job: build-docs
      artifacts: true
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    BUILD_DIR: build-docs
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - cd $BUILD_DIR
    - cmake --build . --target check-source
    - grep -qi "error" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee doxygenError.txt || true
    - grep -qi "warning" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
    - if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
  artifacts:
    name: docs-artifacts-$CI_COMMIT_REF_SLUG
    when: always
    expire_in: 1 week
    paths:
      - $BUILD_DIR/docs/doxygen/doxygen-xml.log
      - $BUILD_DIR/docs/doxygen/check-source.log

linkchecker:
  extends:
    - .build-docs-webpage
  stage: nightly-build
  dependencies:
    - webpage-gmxapi
  only:
    - schedules
    - triggers
    - merge_requests
    - external_pull_requests
  except:
    variables:
      - $GROMACS_RELEASE
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    BUILD_DIR: build-docs-gmxapi
  script:
    - cd $BUILD_DIR
    - linkchecker docs/html/index.html -f ../docs/linkcheckerrc -Fxml --ignore-url html-full
      --ignore-url html-user --ignore-url html-lib --ignore-url .tar.gz --ignore-url _sources
      -o xml
  artifacts:
    reports:
      junit: $BUILD_DIR/linkchecker-out.xml