include:
  - local: '/admin/ci-templates/.include-template.yml'

.configure-extends-template:
  extends:
    - .configure-build-template
    - .no-cache-template
    - .variables-template
    - .tags-template

.configure-release-extends-template:
  extends:
    - .configure-build-release-template
    - .no-cache-template
    - .variables-template
    - .tags-template

.build-extends-template:
  extends:
    - .binary-build-template
    - .build-cache-template
    - .variables-template
    - .tags-template

.test-extends-template:
  extends:
    - .test-base-template
    - .pull-cache-template
    - .test-script-template
    - .variables-template
    - .tags-template

.regressiontests-extends-template:
  extends:
    - .no-cache-template
    - .variables-template
    - .tags-template

# CI is organized into stages so that if early stages fail
# the later ones are not run.
stages:
  # Initial test build for checking simple compilation and getting regressiontest repo
  - pre-build
  # Configuration for building and testing
  - configure-build
  # Build GROMACS in multiple configurations
  - build
  # Test each configuration, perhaps in multiple ways
  - test
  # Generate documentation files
  - documentation
  # Check documentation from source code for errors
  - source-check
  # Linting, docs, static analysis, coverage, code analysis...
  - post-test
  # Nightly work to configure builds
  - nightly-configure
  # Nightly build stage
  - nightly-build
  # Nightly deploy stage
  - nightly-deploy
  # Release work for packaging code
  - release-package
  # Release checksum verification
  - release-verify
  # Configure code for release builds
  - release-configure
  # Release work for packaging code
  - release-build
  # Tests for release code
  - release-tests
  # Prepare for deploying artifacts
  - release-prepare-deploy
  # Deploy stage for release builds
  - release-deploy

# Templates for configuration stage
.configure-gcc:
  extends:
    - .configure-extends-template
    - .gcc-before-script-template
    - .build-gcc-template

.configure-gcc-release:
  extends:
    - .configure-release-extends-template
    - .gcc-before-script-template
    - .build-gcc-template

.configure-gcc-cuda:
    extends:
      - .configure-gcc
      - .cuda-template

.configure-clang:
  extends:
    - .configure-extends-template
    - .clang-before-script-template
    - .build-clang-template

.configure-clang-release:
  extends:
    - .configure-release-extends-template
    - .clang-before-script-template
    - .build-clang-template

.configure-docs:
  extends:
    - .configure-extends-template
    - .configure-docs-template
    - .documentation-before-script-template

.configure-docs-release:
  extends:
    - .configure-extends-template
    - .configure-docs-release-template
    - .documentation-before-script-template

# Templates for build stage
.build-archive:
  extends:
    - .build-extends-template
    - .documentation-before-script-template
    - .build-docs-binary-template
    - .archive-build-template

.build-gcc:
  extends:
    - .build-extends-template
    - .gcc-before-script-template
    - .build-gcc-template

.build-clang:
  extends:
    - .build-extends-template
    - .clang-before-script-template
    - .build-clang-template

.build-docs-binary:
  extends:
    - .build-extends-template
    - .build-cache-template
    - .build-docs-binary-template
    - .documentation-before-script-template

.build-docs-webpage:
  extends:
    - .binary-build-template
    - .variables-template
    - .tags-template
    - .no-cache-template
    - .build-docs-webpage-template
    - .documentation-before-script-template

.build-gcc-cuda:
    extends:
      - .build-gcc
      - .cuda-template

# Templates for test stage
.test-gcc:
  extends:
    - .test-extends-template
    - .gcc-before-script-template
    - .test-gcc-template

.test-gcc-cuda:
    extends:
      - .test-gcc
      - .cuda-template

.test-clang:
  extends:
    - .test-extends-template
    - .clang-before-script-template
    - .test-clang-template

# Special job to package regressiontest files and have them available for testing
# Runs during pre-build
prepare-regressiontests:
  extends:
    - .regressiontests-extends-template
    - .regressiontests-template

prepare-release-version:
  extends:
    - .regressiontests-extends-template
    - .release-version-template

# Initial build that always needs to pass before follow-up stages run
simple-build:
  extends:
    - .simple-build-template
    - .build-cache-template
    - .variables-template
    - .tags-template
    - .gcc-before-script-template
    - .build-gcc-template
    - .gcc7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    BUILD_DIR: simple-build
  except:
    variables:
      - $GROMACS_RELEASE

# Jobs running in first pre-build stage
configure-gcc-7:
  extends:
    - .configure-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
  except:
    variables:
      - $GROMACS_RELEASE

configure-gcc-7-gmxapi:
  extends:
    - .configure-gcc
    - .configure-gmxapi-template
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
  except:
    variables:
      - $GROMACS_RELEASE

configure-gcc-7-double:
  extends:
    - .configure-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
    CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
  except:
    variables:
      - $GROMACS_RELEASE

configure-gcc-8:
  extends:
    - .configure-gcc
    - .gcc8-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 8
  except:
    variables:
      - $GROMACS_RELEASE

configure-gcc-8-cuda-10.2:
    extends:
      - .configure-gcc-cuda
      - .gcc-8-cuda-10.2-template
    needs:
      - job: simple-build
        artifacts: false
    except:
      variables:
        - $GROMACS_RELEASE

configure-gcc-7-simd-sse41:
  extends:
    - .configure-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
    CMAKE_SIMD_OPTIONS: "-DGMX_SIMD=SSE4.1"
  except:
    variables:
      - $GROMACS_RELEASE

configure-clang-7:
  extends:
    - .configure-clang
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
  except:
    variables:
      - $GROMACS_RELEASE

configure-clang-7-gmxapi:
  extends:
    - .configure-clang
    - .configure-gmxapi-template
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 7
  except:
    variables:
      - $GROMACS_RELEASE

configure-clang-8:
  extends:
    - .configure-clang
    - .clang8-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: 8
  except:
    variables:
      - $GROMACS_RELEASE

# For version of clang before 7, we need to always provide the full version
# Use something like this instead in the download script:
# APT_COMPILER_VERSION=$(($COMPILER_MAJOR_VERSION < 7 ? "${COMPILER_MAJOR_VERSION}.0" : $COMPILER_MAJOR_VERSION))
configure-clang-6:
  extends:
    - .configure-clang
    - .clang6-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    COMPILER_MAJOR_VERSION: "6.0"
    CMAKE_MPI_OPTIONS: -DGMX_OPENMP=OFF
  except:
    variables:
      - $GROMACS_RELEASE

configure-clang-tidy:
  extends:
    - .configure-clang
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    BUILD_DIR: build-clang-tidy
    COMPILER_MAJOR_VERSION: 7
    CMAKE_EXTRA_OPTIONS: -DCLANG_TIDY=clang-tidy-$COMPILER_MAJOR_VERSION -DGMX_CLANG_TIDY=ON -DGMX_COMPILER_WARNINGS=ON
    EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE

configure-docs:
  extends:
    - .configure-docs
  needs:
    - job: simple-build
      artifacts: false
  variables:
    BUILD_DIR: build-docs
    CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
  except:
    variables:
      - $GROMACS_RELEASE

configure-docs-gmxapi:
  extends:
    - .configure-docs
    - .configure-gmxapi-template
  needs:
    - job: simple-build
      artifacts: false
  variables:
    BUILD_DIR: build-docs-gmxapi
    CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on
  except:
    variables:
      - $GROMACS_RELEASE

# Only running in scheduled pipelines that are not release builds
configure-archive-nightly:
  stage: nightly-configure
  only:
    - triggers
    - schedules
  needs:
    - job: simple-build
      artifacts: false
  except:
    variables:
      - $GROMACS_RELEASE
  extends:
    - .configure-docs
  variables:
    BUILD_DIR: build-package
    CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
    CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
    CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF

configure-archive-release:
  only:
    refs:
      - web
      - triggers
      - schedules
    variables:
      - $GROMACS_RELEASE

  extends:
    - .configure-docs
  variables:
    BUILD_DIR: build-package
    CMAKE_SIMD_OPTIONS: -DGMX_SIMD=None
    CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_USE_RDTSCP=OFF
    CMAKE_MPI_OPTIONS: -DGMX_THREAD_MPI=OFF -DGMX_OPENMP=OFF

# Jobs running during build stage
build-gcc-7:
  extends:
    - .build-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-gcc-7
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE


build-gcc-7-gmxapi:
  extends:
    - .build-gcc
    - .gmxapi-extra-installs
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-gcc-7-gmxapi
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-gcc-7-double:
  extends:
    - .build-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-gcc-7-double
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-gcc-8:
    extends:
      - .build-gcc
      - .gcc8-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-gcc-8
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-gcc-8-cuda-10.2:
    extends:
      - .build-gcc-cuda
      - .gcc-8-cuda-10.2-template
    needs:
      - job: simple-build
        artifacts: false
      - job: configure-gcc-8-cuda-10.2
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-gcc-7-simd-sse41:
    extends:
      - .build-gcc
      - .gcc7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-gcc-7-simd-sse41
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-clang-7:
    extends:
      - .build-clang
      - .clang7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-clang-7
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-clang-7-gmxapi:
    extends:
      - .build-clang
      - .gmxapi-extra-installs
      - .clang7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-clang-7-gmxapi
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-clang-8:
    extends:
      - .build-clang
      - .clang8-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-clang-8
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

build-clang-6:
    extends:
      - .build-clang
      - .clang6-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: configure-clang-6
        artifacts: true
    except:
      variables:
        - $GROMACS_RELEASE

# Jobs running during test stage
test-gcc-7:
    extends:
      - .test-gcc
      - .gcc7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-7
    except:
      variables:
        - $GROMACS_RELEASE

test-gcc-7-gmxapi:
    extends:
      - .test-gcc
      - .gmxapi-extra-installs
      - .gcc7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-7-gmxapi
    except:
      variables:
        - $GROMACS_RELEASE

test-gcc-7-double:
    extends:
      - .test-gcc
      - .gcc7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-7-double
    except:
      variables:
        - $GROMACS_RELEASE

test-gcc-8:
    extends:
      - .test-gcc
      - .gcc8-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-8
    except:
      variables:
        - $GROMACS_RELEASE

test-gcc-8-cuda-10.2:
    variables:
      KUBERNETES_EXTENDED_RESOURCE_NAME: "nvidia.com/gpu"
      KUBERNETES_EXTENDED_RESOURCE_LIMIT: 1
    extends:
      - .test-gcc-cuda
      - .gcc-8-cuda-10.2-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-8-cuda-10.2
    except:
      variables:
        - $GROMACS_RELEASE

test-gcc-7-simd-sse41:
    extends:
      - .test-gcc
      - .gcc7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-gcc-7-simd-sse41
    except:
      variables:
        - $GROMACS_RELEASE

test-clang-7:
    extends:
      - .test-clang
      - .clang7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-clang-7
    except:
      variables:
        - $GROMACS_RELEASE

test-clang-7-gmxapi:
    extends:
      - .test-clang
      - .gmxapi-extra-installs
      - .clang7-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-clang-7-gmxapi
    except:
      variables:
        - $GROMACS_RELEASE

test-clang-8:
    extends:
      - .test-clang
      - .clang8-template
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-clang-8
    except:
      variables:
        - $GROMACS_RELEASE

test-clang-6:
    extends:
      - .test-clang
      - .clang6-template       
    needs:
      - job: simple-build
        artifacts: false 
      - job: build-clang-6
    except:
      variables:
        - $GROMACS_RELEASE

# Jobs running in source checking stage
build-clang-tidy:
  extends:
    - .build-gcc
    - .gcc8-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-gcc-8
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-gcc-7-simd-sse41:
  extends:
    - .build-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-gcc-7-simd-sse41
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-clang-7:
  extends:
    - .build-clang
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-7
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-clang-7-gmxapi:
  extends:
    - .build-clang
    - .gmxapi-extra-installs
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-7-gmxapi
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-clang-8:
  extends:
    - .build-clang
    - .clang8-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-8
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

build-clang-6:
  extends:
    - .build-clang
    - .clang6-template
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-6
      artifacts: true
  except:
    variables:
      - $GROMACS_RELEASE

# Jobs running during test stage
test-gcc-7:
  extends:
    - .test-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-gcc-7
  except:
    variables:
      - $GROMACS_RELEASE

test-gcc-7-gmxapi:
  extends:
    - .test-gcc
    - .gmxapi-extra-installs
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-gcc-7-gmxapi
  except:
    variables:
      - $GROMACS_RELEASE

test-gcc-7-double:
  extends:
    - .test-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-gcc-7-double
  except:
    variables:
      - $GROMACS_RELEASE

test-gcc-8:
  extends:
    - .test-gcc
    - .gcc8-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-gcc-8
  except:
    variables:
      - $GROMACS_RELEASE

test-gcc-7-simd-sse41:
  extends:
    - .test-gcc
    - .gcc7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-gcc-7-simd-sse41
  except:
    variables:
      - $GROMACS_RELEASE

test-clang-7:
  extends:
    - .test-clang
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-clang-7
  except:
    variables:
      - $GROMACS_RELEASE

test-clang-7-gmxapi:
  extends:
    - .test-clang
    - .gmxapi-extra-installs
    - .clang7-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-clang-7-gmxapi
  except:
    variables:
      - $GROMACS_RELEASE

test-clang-8:
  extends:
    - .test-clang
    - .clang8-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-clang-8
  except:
    variables:
      - $GROMACS_RELEASE

test-clang-6:
  extends:
    - .test-clang
    - .clang6-template
  needs:
    - job: simple-build
      artifacts: false
    - job: build-clang-6
  except:
    variables:
      - $GROMACS_RELEASE

# Jobs running in source checking stage
build-clang-tidy:
  extends:
    - .build-clang
    - .clang7-template
  stage: source-check
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-clang-tidy
      artifacts: true
  variables:
    BUILD_DIR: build-clang-tidy
    COMPILER_MAJOR_VERSION: 7
    EXTRA_INSTALLS: clang-tidy-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE

run-clang-format:
  extends:
    - .binary-build-template
    - .no-cache-template
    - .variables-template
    - .tags-template
    - .clang-before-script-template
    - .build-clang-template
    - .clang7-template
  stage: source-check
  when: always
  needs:
    - job: simple-build
      artifacts: false
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    COMPILER_MAJOR_VERSION: 7
    EXTRA_INSTALLS: clang-format-$COMPILER_MAJOR_VERSION
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - export CLANG_FORMAT=clang-format-$COMPILER_MAJOR_VERSION
    - admin/clang-format.sh check --rev=HEAD^ --warnings=clang-format.log
    - grep -iq "needs formatting" clang-format.log | tee formatting.txt || true
    - if [ -s formatting.txt ] ; then echo "clang-format.sh found issues"; exit 1; fi
  artifacts:
    when: on_failure
    paths:
      - clang-format.log
      - formatting.txt

run-copyright-check:
  extends:
    - .binary-build-template
    - .no-cache-template
    - .variables-template
    - .tags-template
    - .clang-before-script-template
    - .build-clang-template
    - .clang7-template
  stage: source-check
  when: always
  needs:
    - job: simple-build
      artifacts: false
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - admin/copyright.sh check --rev=HEAD^ --warnings=copyright.log
    - grep -iq "copyright year" copyright.log | tee years.log || true
    - grep -iq "copyright header" copyright.log | tee headers.log || true
    - if [[ -s years.log || -s headers.log ]] ; then
      echo "Copyright information needs updating" ;
      exit 1 ;
      fi
  artifacts:
    when: on_failure
    paths:
      - copyright.log
      - years.log
      - headers.log

run-check-source:
  extends:
    - .no-cache-template
    - .variables-template
    - .tags-template
    - .build-docs-binary-template
    - .documentation-before-script-template
  stage: source-check
  needs:
    - job: simple-build
      artifacts: false
    - job: build-docs
      artifacts: true
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    BUILD_DIR: build-docs
    COMPILER_MAJOR_VERSION: 7
  except:
    variables:
      - $GROMACS_RELEASE
  script:
    - cd $BUILD_DIR
    - cmake --build . --target check-source
    - grep -qi "error" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee doxygenError.txt || true
    - grep -qi "warning" docs/doxygen/doxygen*log docs/doxygen/check-source.log | tee -a doxygenError.txt || true
    - if [ -s doxygenError.txt ] ; then echo "Found errors while running doxygen"; exit 1; fi
  artifacts:
    name: docs-artifacts-$CI_COMMIT_REF_SLUG
    when: always
    expire_in: 1 week
    paths:
      - $BUILD_DIR/docs/doxygen/doxygen-xml.log
      - $BUILD_DIR/docs/doxygen/check-source.log

# Jobs running during documentation build stage
build-docs:
  extends:
    - .build-docs-binary
  stage: documentation
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-docs
      artifacts: true
  variables:
    BUILD_DIR: build-docs
  except:
    variables:
      - $GROMACS_RELEASE

build-docs-gmxapi:
  extends:
    - .build-docs-binary
    - .gmxapi-extra-installs
  stage: documentation
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-docs-gmxapi
      artifacts: true
  variables:
    BUILD_DIR: build-docs-gmxapi
  except:
    variables:
      - $GROMACS_RELEASE

# Jobs running in post-test stage

# The manual build is built separately so that errors in converting
# Sphinx to LaTeX and compiling can always be found in the
# all-output.txt file, while avoiding many thousands of lines of spam
# from pdflatex for normal builds. This does reduce the available
# parallel utilization, and so increases the build time.
#
# TODO why are the doxygen and sphinx log files disappearing
# TODO use a feature from gitlab runner instead of using pipefail to get timings for the job
webpage:
  extends:
    - .build-docs-webpage
  stage: post-test
  needs:
    - job: build-docs
      artifacts: true
    - job: run-check-source
      artifacts: false
  variables:
    BUILD_DIR: build-docs
  except:
    variables:
      - $GROMACS_RELEASE

webpage-gmxapi:
  extends:
    - .build-docs-webpage
    - .gmxapi-extra-installs
  stage: post-test
  needs:
    - job: build-docs-gmxapi
      artifacts: true
    - job: run-check-source
      artifacts: false
  variables:
    BUILD_DIR: build-docs-gmxapi
  except:
    variables:
      - $GROMACS_RELEASE


# Jobs running in release stage
linkchecker:
  extends:
    - .build-docs-webpage
  stage: nightly-build
  dependencies:
    - webpage-gmxapi
  only:
    - schedules
    - triggers
    - merge_requests
    - external_pull_requests
  except:
    variables:
      - $GROMACS_RELEASE
  variables:
    KUBERNETES_CPU_LIMIT: 1
    KUBERNETES_CPU_REQUEST: 1
    KUBERNETES_MEMORY_LIMIT: 2Gi
    BUILD_DIR: build-docs-gmxapi
  script:
    - cd $BUILD_DIR
    - linkchecker docs/html/index.html -f ../docs/linkcheckerrc -Fxml --ignore-url html-full
      --ignore-url html-user --ignore-url html-lib --ignore-url .tar.gz --ignore-url _sources
      -o xml
  artifacts:
    reports:
      junit: $BUILD_DIR/linkchecker-out.xml

build-archive-nightly:
  extends:
    - .build-archive
  stage: nightly-build
  needs:
    - job: simple-build
      artifacts: false
    - job: configure-archive-nightly
      artifacts: true
  only:
    - triggers
    - schedules
  except:
    variables:
      - $GROMACS_RELEASE
  variables:
    BUILD_DIR: build-package

webpage-nightly:
  extends:
    - .build-docs-webpage
    - .configure-gmxapi-template
  stage: nightly-deploy
  only:
    - triggers
    - schedules
  except:
    variables:
      - $GROMACS_RELEASE
  needs:
    - job: simple-build
      artifacts: false
    - job: linkchecker
      artifacts: false
    - job: webpage-gmxapi
      artifacts: true
  variables:
    BUILD_DIR: build-docs-gmxapi
  script:
    - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
  artifacts:
    when: always
    paths:
      - webpage.tar.gz

package-regressiontests-release:
  extends:
    - .regressiontests-extends-template
    - .regressiontests-release-template
  needs:
    - job: prepare-release-version
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE


package-archive-release:
  extends:
    - .build-archive
  stage: release-package
  needs:
    - job: configure-archive-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE
  variables:
    BUILD_DIR: build-package

release-verify:
  extends:
    - .regressiontests-extends-template
    - .release-verify-template
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

webpage-configure-release:
  extends:
    - .configure-docs-release
    - .configure-gmxapi-template
    - .no-cache-template
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version
  variables:
    CMAKE_EXTRA_OPTIONS: -DGMX_BUILD_HELP=on -DGMX_BUILD_MANUAL=on

configure-gcc-7-release:
  extends:
    - .configure-gcc-release
    - .no-cache-template
    - .gcc7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    RELEASE_BUILD_DIR: release-builds-gcc
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-gcc-7-gmxapi-release:
  extends:
    - .configure-gcc-release
    - .configure-gmxapi-template
    - .no-cache-template
    - .gcc7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    RELEASE_BUILD_DIR: release-builds-gcc
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-gcc-7-double-release:
  extends:
    - .configure-gcc-release
    - .no-cache-template
    - .gcc7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    CMAKE_PRECISION_OPTIONS: -DGMX_DOUBLE=ON
    RELEASE_BUILD_DIR: release-builds-gcc
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-gcc-8-release:
  extends:
    - .configure-gcc-release
    - .no-cache-template
    - .gcc8-template
  variables:
    COMPILER_MAJOR_VERSION: 8
    RELEASE_BUILD_DIR: release-builds-gcc
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-clang-7-release:
  extends:
    - .configure-clang-release
    - .no-cache-template
    - .clang7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    RELEASE_BUILD_DIR: release-builds-clang
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-clang-7-gmxapi-release:
  extends:
    - .configure-clang-release
    - .configure-gmxapi-template
    - .no-cache-template
    - .clang7-template
  variables:
    COMPILER_MAJOR_VERSION: 7
    RELEASE_BUILD_DIR: release-builds-clang
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

configure-clang-8-release:
  extends:
    - .configure-clang-release
    - .no-cache-template
    - .clang8-template
  variables:
    COMPILER_MAJOR_VERSION: 8
    RELEASE_BUILD_DIR: release-builds-clang
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - package-archive-release
    - package-regressiontests-release
    - prepare-release-version

build-gcc-7-release:
  extends:
    - .build-gcc
    - .gcc7-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-gcc-7-gmxapi-release:
  extends:
    - .build-gcc
    - .gmxapi-extra-installs
    - .gcc7-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-gmxapi-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-gcc-7-double-release:
  extends:
    - .build-gcc
    - .gcc7-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-double-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-gcc-8-release:
  extends:
    - .build-gcc
    - .gcc8-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-8-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-clang-7-release:
  extends:
    - .build-clang
    - .clang7-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-7-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-clang-7-gmxapi-release:
  extends:
    - .build-clang
    - .gmxapi-extra-installs
    - .clang7-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-7-gmxapi-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

build-clang-8-release:
  extends:
    - .build-clang
    - .clang8-template
  stage: release-build
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-8-release
      artifacts: true
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE

webpage-binary-release:
  extends:
    - .build-docs-binary
    - .gmxapi-extra-installs
  stage: release-build
  needs:
    - job: webpage-configure-release
      artifacts: true
  variables:
    BUILD_DIR: release-doc-builds
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-gcc-7-release:
  extends:
    - .test-gcc
    - .gcc7-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-release
      artifacts: true
    - job: build-gcc-7-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-gcc-7-gmxapi-release:
  extends:
    - .test-gcc
    - .gmxapi-extra-installs
    - .gcc7-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-gmxapi-release
      artifacts: true
    - job: build-gcc-7-gmxapi-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-gcc-7-double-release:
  extends:
    - .test-gcc
    - .gcc7-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-7-double-release
      artifacts: true
    - job: build-gcc-7-double-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-gcc-8-release:
  extends:
    - .test-gcc
    - .gcc8-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-gcc
  needs:
    - job: configure-gcc-8-release
      artifacts: true
    - job: build-gcc-8-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-clang-7-release:
  extends:
    - .test-clang
    - .clang7-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-7-release
      artifacts: true
    - job: build-clang-7-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-clang-7-gmxapi-release:
  extends:
    - .test-clang
    - .gmxapi-extra-installs
    - .clang7-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-7-gmxapi-release
      artifacts: true
    - job: build-clang-7-gmxapi-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

test-clang-8-release:
  extends:
    - .test-clang
    - .clang8-template
  stage: release-tests
  variables:
    BUILD_DIR: release-builds-clang
  needs:
    - job: configure-clang-8-release
      artifacts: true
    - job: build-clang-8-release
      artifacts: true
  only:
    refs:
      - triggers
      - web
      - schedules
    variables:
      - $GROMACS_RELEASE

webpage-build-release:
  extends:
    - .build-docs-webpage
    - .configure-gmxapi-template
  dependencies:
    - webpage-binary-release
    - webpage-configure-release
  stage: release-prepare-deploy
  only:
    refs:
      - web
      - schedules
      - triggers
    variables:
      - $GROMACS_RELEASE
  variables:
    BUILD_DIR: release-doc-builds

webpage-archive-release:
  extends:
    - .build-docs-webpage
    - .configure-gmxapi-template
  stage: release-deploy
  only:
    refs:
      - web
      - triggers
      - schedules
    variables:
      - $GROMACS_RELEASE
  dependencies:
    - webpage-build-release
    - package-archive-release
    - package-regressiontests-release
  variables:
    BUILD_DIR: release-doc-builds
  script:
    - tar czf webpage.tar.gz $BUILD_DIR/docs/html/
  artifacts:
    when: always
    paths:
      - webpage.tar.gz
      - gromacs-*tar.gz
      - regressiontests-*tar.gz