3 * This source code is part of
7 * GROningen MAchine for Chemical Simulations
10 * Written by David van der Spoel, Erik Lindahl, Berk Hess, and others.
11 * Copyright (c) 1991-2000, University of Groningen, The Netherlands.
12 * Copyright (c) 2001-2004, The GROMACS development team,
13 * check out http://www.gromacs.org for more information.
15 * This program is free software; you can redistribute it and/or
16 * modify it under the terms of the GNU General Public License
17 * as published by the Free Software Foundation; either version 2
18 * of the License, or (at your option) any later version.
20 * If you want to redistribute modifications, please consider that
21 * scientific software is very special. Version control is crucial -
22 * bugs must be traceable. We will be happy to consider code for
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27 * To help us fund GROMACS development, we humbly ask that you cite
28 * the papers on the package - you can find them in the top README file.
30 * For more info, check our website at http://www.gromacs.org
33 * Gallium Rubidium Oxygen Manganese Argon Carbon Silicon
35 /* This file is completely threadsafe - keep it that way! */
50 #include "gmx_fatal.h"
54 #include "mtop_util.h"
57 static void cmp_int(FILE *fp,const char *s,int index,int i1,int i2)
61 fprintf(fp,"%s[%d] (%d - %d)\n",s,index,i1,i2);
63 fprintf(fp,"%s (%d - %d)\n",s,i1,i2);
67 static void cmp_gmx_large_int(FILE *fp,const char *s,gmx_large_int_t i1,gmx_large_int_t i2)
71 fprintf(fp,gmx_large_int_pfmt,i1);
73 fprintf(fp,gmx_large_int_pfmt,i2);
78 static void cmp_us(FILE *fp,const char *s,int index,unsigned short i1,unsigned short i2)
82 fprintf(fp,"%s[%d] (%d - %d)\n",s,index,i1,i2);
84 fprintf(fp,"%s (%d - %d)\n",s,i1,i2);
88 static void cmp_uc(FILE *fp,const char *s,int index,unsigned char i1,unsigned char i2)
92 fprintf(fp,"%s[%d] (%d - %d)\n",s,index,i1,i2);
94 fprintf(fp,"%s (%d - %d)\n",s,i1,i2);
98 static gmx_bool cmp_bool(FILE *fp, const char *s, int index, gmx_bool b1, gmx_bool b2)
112 fprintf(fp,"%s[%d] (%s - %s)\n",s,index,
113 bool_names[b1],bool_names[b2]);
115 fprintf(fp,"%s (%s - %s)\n",s,
116 bool_names[b1],bool_names[b2]);
121 static void cmp_str(FILE *fp, const char *s, int index,
122 const char *s1, const char *s2)
124 if (strcmp(s1,s2) != 0) {
126 fprintf(fp,"%s[%d] (%s - %s)\n",s,index,s1,s2);
128 fprintf(fp,"%s (%s - %s)\n",s,s1,s2);
132 static gmx_bool equal_real(real i1,real i2,real ftol,real abstol)
134 return ( ( 2*fabs(i1 - i2) <= (fabs(i1) + fabs(i2))*ftol ) || fabs(i1-i2)<=abstol );
137 static gmx_bool equal_float(float i1,float i2,float ftol,float abstol)
139 return ( ( 2*fabs(i1 - i2) <= (fabs(i1) + fabs(i2))*ftol ) || fabs(i1-i2)<=abstol );
142 static gmx_bool equal_double(double i1,double i2,real ftol,real abstol)
144 return ( ( 2*fabs(i1 - i2) <= (fabs(i1) + fabs(i2))*ftol ) || fabs(i1-i2)<=abstol );
148 cmp_real(FILE *fp,const char *s,int index,real i1,real i2,real ftol,real abstol)
150 if (!equal_real(i1,i2,ftol,abstol)) {
152 fprintf(fp,"%s[%2d] (%e - %e)\n",s,index,i1,i2);
154 fprintf(fp,"%s (%e - %e)\n",s,i1,i2);
159 cmp_float(FILE *fp,const char *s,int index,float i1,float i2,float ftol,float abstol)
161 if (!equal_float(i1,i2,ftol,abstol)) {
163 fprintf(fp,"%s[%2d] (%e - %e)\n",s,index,i1,i2);
165 fprintf(fp,"%s (%e - %e)\n",s,i1,i2);
172 cmp_double(FILE *fp,const char *s,int index,double i1,double i2,double ftol,double abstol)
174 if (!equal_double(i1,i2,ftol,abstol)) {
176 fprintf(fp,"%s[%2d] (%16.9e - %16.9e)\n",s,index,i1,i2);
178 fprintf(fp,"%s (%16.9e - %16.9e)\n",s,i1,i2);
182 static void cmp_rvec(FILE *fp,const char *s,int index,rvec i1,rvec i2,real ftol,real abstol)
184 if(!equal_real(i1[XX],i2[XX],ftol,abstol) ||
185 !equal_real(i1[YY],i2[YY],ftol,abstol) ||
186 !equal_real(i1[ZZ],i2[ZZ],ftol,abstol))
189 fprintf(fp,"%s[%5d] (%12.5e %12.5e %12.5e) - (%12.5e %12.5e %12.5e)\n",
190 s,index,i1[XX],i1[YY],i1[ZZ],i2[XX],i2[YY],i2[ZZ]);
192 fprintf(fp,"%s (%12.5e %12.5e %12.5e) - (%12.5e %12.5e %12.5e)\n",
193 s,i1[XX],i1[YY],i1[ZZ],i2[XX],i2[YY],i2[ZZ]);
197 static void cmp_ivec(FILE *fp,const char *s,int index,ivec i1,ivec i2)
199 if ((i1[XX] != i2[XX]) || (i1[YY] != i2[YY]) || (i1[ZZ] != i2[ZZ])) {
201 fprintf(fp,"%s[%5d] (%8d,%8d,%8d - %8d,%8d,%8d)\n",s,index,
202 i1[XX],i1[YY],i1[ZZ],i2[XX],i2[YY],i2[ZZ]);
204 fprintf(fp,"%s (%8d,%8d,%8d - %8d,%8d,%8d)\n",s,
205 i1[XX],i1[YY],i1[ZZ],i2[XX],i2[YY],i2[ZZ]);
209 static void cmp_ilist(FILE *fp,int ftype,t_ilist *il1,t_ilist *il2)
214 fprintf(fp,"comparing ilist %s\n",interaction_function[ftype].name);
215 sprintf(buf,"%s->nr",interaction_function[ftype].name);
216 cmp_int(fp,buf,-1,il1->nr,il2->nr);
217 sprintf(buf,"%s->iatoms",interaction_function[ftype].name);
218 if (((il1->nr > 0) && (!il1->iatoms)) ||
219 ((il2->nr > 0) && (!il2->iatoms)) ||
220 ((il1->nr != il2->nr)))
221 fprintf(fp,"Comparing radically different topologies - %s is different\n",
224 for(i=0; (i<il1->nr); i++)
225 cmp_int(fp,buf,i,il1->iatoms[i],il2->iatoms[i]);
228 void cmp_iparm(FILE *fp,const char *s,t_functype ft,
229 t_iparams ip1,t_iparams ip2,real ftol,real abstol)
235 for(i=0; i<MAXFORCEPARAM && !bDiff; i++)
236 bDiff = !equal_real(ip1.generic.buf[i],ip2.generic.buf[i],ftol,abstol);
238 fprintf(fp,"%s1: ",s);
239 pr_iparams(fp,ft,&ip1);
240 fprintf(fp,"%s2: ",s);
241 pr_iparams(fp,ft,&ip2);
245 void cmp_iparm_AB(FILE *fp,const char *s,t_functype ft,t_iparams ip1,real ftol,real abstol)
247 int nrfpA,nrfpB,p0,i;
250 /* Normally the first parameter is perturbable */
252 nrfpA = interaction_function[ft].nrfpA;
253 nrfpB = interaction_function[ft].nrfpB;
256 } else if (interaction_function[ft].flags & IF_TABULATED) {
257 /* For tabulated interactions only the second parameter is perturbable */
262 for(i=0; i<nrfpB && !bDiff; i++) {
263 bDiff = !equal_real(ip1.generic.buf[p0+i],ip1.generic.buf[nrfpA+i],ftol,abstol);
266 fprintf(fp,"%s: ",s);
267 pr_iparams(fp,ft,&ip1);
271 static void cmp_idef(FILE *fp,t_idef *id1,t_idef *id2,real ftol,real abstol)
274 char buf1[64],buf2[64];
276 fprintf(fp,"comparing idef\n");
278 cmp_int(fp,"idef->ntypes",-1,id1->ntypes,id2->ntypes);
279 cmp_int(fp,"idef->atnr", -1,id1->atnr,id2->atnr);
280 for(i=0; (i<id1->ntypes); i++) {
281 sprintf(buf1,"idef->functype[%d]",i);
282 sprintf(buf2,"idef->iparam[%d]",i);
283 cmp_int(fp,buf1,i,(int)id1->functype[i],(int)id2->functype[i]);
284 cmp_iparm(fp,buf2,id1->functype[i],
285 id1->iparams[i],id2->iparams[i],ftol,abstol);
287 cmp_real(fp,"fudgeQQ",-1,id1->fudgeQQ,id2->fudgeQQ,ftol,abstol);
288 for(i=0; (i<F_NRE); i++)
289 cmp_ilist(fp,i,&(id1->il[i]),&(id2->il[i]));
291 for(i=0; (i<id1->ntypes); i++)
292 cmp_iparm_AB(fp,"idef->iparam",id1->functype[i],id1->iparams[i],ftol,abstol);
296 static void cmp_block(FILE *fp,t_block *b1,t_block *b2,const char *s)
301 fprintf(fp,"comparing block %s\n",s);
302 sprintf(buf,"%s.nr",s);
303 cmp_int(fp,buf,-1,b1->nr,b2->nr);
306 static void cmp_blocka(FILE *fp,t_blocka *b1,t_blocka *b2,const char *s)
311 fprintf(fp,"comparing blocka %s\n",s);
312 sprintf(buf,"%s.nr",s);
313 cmp_int(fp,buf,-1,b1->nr,b2->nr);
314 sprintf(buf,"%s.nra",s);
315 cmp_int(fp,buf,-1,b1->nra,b2->nra);
318 static void cmp_atom(FILE *fp,int index,t_atom *a1,t_atom *a2,real ftol,real abstol)
324 cmp_us(fp,"atom.type",index,a1->type,a2->type);
325 cmp_us(fp,"atom.ptype",index,a1->ptype,a2->ptype);
326 cmp_int(fp,"atom.resind",index,a1->resind,a2->resind);
327 cmp_int(fp,"atom.atomnumber",index,a1->atomnumber,a2->atomnumber);
328 cmp_real(fp,"atom.m",index,a1->m,a2->m,ftol,abstol);
329 cmp_real(fp,"atom.q",index,a1->q,a2->q,ftol,abstol);
330 cmp_us(fp,"atom.typeB",index,a1->typeB,a2->typeB);
331 cmp_real(fp,"atom.mB",index,a1->mB,a2->mB,ftol,abstol);
332 cmp_real(fp,"atom.qB",index,a1->qB,a2->qB,ftol,abstol);
334 cmp_us(fp,"atom.type",index,a1->type,a1->typeB);
335 cmp_real(fp,"atom.m",index,a1->m,a1->mB,ftol,abstol);
336 cmp_real(fp,"atom.q",index,a1->q,a1->qB,ftol,abstol);
340 static void cmp_atoms(FILE *fp,t_atoms *a1,t_atoms *a2,real ftol, real abstol)
344 fprintf(fp,"comparing atoms\n");
347 cmp_int(fp,"atoms->nr",-1,a1->nr,a2->nr);
348 for(i=0; (i<a1->nr); i++)
349 cmp_atom(fp,i,&(a1->atom[i]),&(a2->atom[i]),ftol,abstol);
351 for(i=0; (i<a1->nr); i++)
352 cmp_atom(fp,i,&(a1->atom[i]),NULL,ftol,abstol);
356 static void cmp_top(FILE *fp,t_topology *t1,t_topology *t2,real ftol, real abstol)
360 fprintf(fp,"comparing top\n");
362 cmp_idef(fp,&(t1->idef),&(t2->idef),ftol,abstol);
363 cmp_atoms(fp,&(t1->atoms),&(t2->atoms),ftol,abstol);
364 cmp_block(fp,&t1->cgs,&t2->cgs,"cgs");
365 cmp_block(fp,&t1->mols,&t2->mols,"mols");
366 cmp_blocka(fp,&t1->excls,&t2->excls,"excls");
368 cmp_idef(fp,&(t1->idef),NULL,ftol,abstol);
369 cmp_atoms(fp,&(t1->atoms),NULL,ftol,abstol);
373 static void cmp_groups(FILE *fp,gmx_groups_t *g0,gmx_groups_t *g1,
374 int natoms0,int natoms1)
379 fprintf(fp,"comparing groups\n");
381 for(i=0; i<egcNR; i++) {
382 sprintf(buf,"grps[%d].nr",i);
383 cmp_int(fp,buf,-1,g0->grps[i].nr,g1->grps[i].nr);
384 if (g0->grps[i].nr == g1->grps[i].nr) {
385 for(j=0; j<g0->grps[i].nr; j++) {
386 sprintf(buf,"grps[%d].name[%d]",i,j);
388 *g0->grpname[g0->grps[i].nm_ind[j]],
389 *g1->grpname[g1->grps[i].nm_ind[j]]);
392 cmp_int(fp,"ngrpnr",i,g0->ngrpnr[i],g1->ngrpnr[i]);
393 if (g0->ngrpnr[i] == g1->ngrpnr[i] && natoms0 == natoms1 &&
394 (g0->grpnr[i] != NULL || g1->grpnr[i] != NULL)) {
395 for(j=0; j<natoms0; j++) {
396 cmp_int(fp,gtypes[i],j,ggrpnr(g0,i,j),ggrpnr(g1,i,j));
400 /* We have compared the names in the groups lists,
401 * so we can skip the grpname list comparison.
405 static void cmp_rvecs(FILE *fp,const char *title,int n,rvec x1[],rvec x2[],
406 gmx_bool bRMSD,real ftol,real abstol)
413 for(i=0; (i<n); i++) {
414 for(m=0; m<DIM; m++) {
415 d = x1[i][m] - x2[i][m];
419 fprintf(fp,"%s RMSD %g\n",title,sqrt(ssd/n));
421 for(i=0; (i<n); i++) {
422 cmp_rvec(fp,title,i,x1[i],x2[i],ftol,abstol);
427 static void cmp_grpopts(FILE *fp,t_grpopts *opt1,t_grpopts *opt2,real ftol, real abstol)
430 char buf1[256],buf2[256];
432 cmp_int(fp,"inputrec->grpopts.ngtc",-1, opt1->ngtc,opt2->ngtc);
433 cmp_int(fp,"inputrec->grpopts.ngacc",-1, opt1->ngacc,opt2->ngacc);
434 cmp_int(fp,"inputrec->grpopts.ngfrz",-1, opt1->ngfrz,opt2->ngfrz);
435 cmp_int(fp,"inputrec->grpopts.ngener",-1,opt1->ngener,opt2->ngener);
436 for(i=0; (i<min(opt1->ngtc,opt2->ngtc)); i++) {
437 cmp_real(fp,"inputrec->grpopts.nrdf",i,opt1->nrdf[i],opt2->nrdf[i],ftol,abstol);
438 cmp_real(fp,"inputrec->grpopts.ref_t",i,opt1->ref_t[i],opt2->ref_t[i],ftol,abstol);
439 cmp_real(fp,"inputrec->grpopts.tau_t",i,opt1->tau_t[i],opt2->tau_t[i],ftol,abstol);
440 cmp_int(fp,"inputrec->grpopts.annealing",i,opt1->annealing[i],opt2->annealing[i]);
441 cmp_int(fp,"inputrec->grpopts.anneal_npoints",i,
442 opt1->anneal_npoints[i],opt2->anneal_npoints[i]);
443 if(opt1->anneal_npoints[i]==opt2->anneal_npoints[i]) {
444 sprintf(buf1,"inputrec->grpopts.anneal_time[%d]",i);
445 sprintf(buf2,"inputrec->grpopts.anneal_temp[%d]",i);
446 for(j=0;j<opt1->anneal_npoints[i];j++) {
447 cmp_real(fp,buf1,j,opt1->anneal_time[i][j],opt2->anneal_time[i][j],ftol,abstol);
448 cmp_real(fp,buf2,j,opt1->anneal_temp[i][j],opt2->anneal_temp[i][j],ftol,abstol);
452 if (opt1->ngener == opt2->ngener) {
453 for(i=0; i<opt1->ngener; i++)
454 for(j=i; j<opt1->ngener; j++) {
455 sprintf(buf1,"inputrec->grpopts.egp_flags[%d]",i);
457 opt1->egp_flags[opt1->ngener*i+j],
458 opt2->egp_flags[opt1->ngener*i+j]);
461 for(i=0; (i<min(opt1->ngacc,opt2->ngacc)); i++)
462 cmp_rvec(fp,"inputrec->grpopts.acc",i,opt1->acc[i],opt2->acc[i],ftol,abstol);
463 for(i=0; (i<min(opt1->ngfrz,opt2->ngfrz)); i++)
464 cmp_ivec(fp,"inputrec->grpopts.nFreeze",i,opt1->nFreeze[i],opt2->nFreeze[i]);
467 static void cmp_cosines(FILE *fp,const char *s,t_cosines c1[DIM],t_cosines c2[DIM],real ftol, real abstol)
472 for(m=0; (m<DIM); m++) {
473 sprintf(buf,"inputrec->%s[%d]",s,m);
474 cmp_int(fp,buf,0,c1->n,c2->n);
475 for(i=0; (i<min(c1->n,c2->n)); i++) {
476 cmp_real(fp,buf,i,c1->a[i],c2->a[i],ftol,abstol);
477 cmp_real(fp,buf,i,c1->phi[i],c2->phi[i],ftol,abstol);
481 static void cmp_adress(FILE *fp,t_adress *ad1,t_adress *ad2,
482 real ftol,real abstol)
484 cmp_int(fp,"ir->adress->type" ,-1,ad1->type,ad2->type);
485 cmp_real(fp,"ir->adress->const_wf" ,-1,ad1->const_wf,ad2->const_wf,ftol,abstol);
486 cmp_real(fp,"ir->adress->ex_width" ,-1,ad1->ex_width,ad2->ex_width,ftol,abstol);
487 cmp_real(fp,"ir->adress->hy_width" ,-1,ad1->hy_width,ad2->hy_width,ftol,abstol);
488 cmp_int(fp,"ir->adress->icor" ,-1,ad1->icor,ad2->icor);
489 cmp_int(fp,"ir->adress->site" ,-1,ad1->site,ad2->site);
490 cmp_rvec(fp,"ir->adress->refs" ,-1,ad1->refs,ad2->refs,ftol,abstol);
491 cmp_real(fp,"ir->adress->ex_forcecap", -1,ad1->ex_forcecap,ad2->ex_forcecap,ftol,abstol);
494 static void cmp_pull(FILE *fp,t_pull *pull1,t_pull *pull2,real ftol, real abstol)
496 fprintf(fp,"WARNING: Both files use COM pulling, but comparing of the pull struct is not implemented (yet). The pull parameters could be the same or different.\n");
499 static void cmp_simtempvals(FILE *fp,t_simtemp *simtemp1,t_simtemp *simtemp2, int n_lambda, real ftol, real abstol)
502 cmp_int(fp,"inputrec->simtempvals->eSimTempScale",-1,simtemp1->eSimTempScale,simtemp2->eSimTempScale);
503 cmp_real(fp,"inputrec->simtempvals->simtemp_high",-1,simtemp1->simtemp_high,simtemp2->simtemp_high,ftol,abstol);
504 cmp_real(fp,"inputrec->simtempvals->simtemp_low",-1,simtemp1->simtemp_low,simtemp2->simtemp_low,ftol,abstol);
505 for(i=0; i<n_lambda; i++)
507 cmp_real(fp,"inputrec->simtempvals->temperatures",-1,simtemp1->temperatures[i],simtemp2->temperatures[i],ftol,abstol);
511 static void cmp_expandedvals(FILE *fp,t_expanded *expand1,t_expanded *expand2,int n_lambda, real ftol, real abstol)
515 cmp_bool(fp,"inputrec->fepvals->bInit_weights",-1,expand1->bInit_weights,expand2->bInit_weights);
516 cmp_bool(fp,"inputrec->fepvals->bWLoneovert",-1,expand1->bWLoneovert,expand2->bWLoneovert);
518 for(i=0; i<n_lambda; i++)
520 cmp_real(fp,"inputrec->expandedvals->init_lambda_weights",-1,
521 expand1->init_lambda_weights[i],expand2->init_lambda_weights[i],ftol,abstol);
524 cmp_int(fp,"inputrec->expandedvals->lambda-stats", -1,expand1->elamstats,expand2->elamstats);
525 cmp_int(fp,"inputrec->expandedvals->lambda-mc-move", -1,expand1->elmcmove,expand2->elmcmove);
526 cmp_int(fp,"inputrec->expandedvals->lmc-repeats",-1,expand1->lmc_repeats,expand2->lmc_repeats);
527 cmp_int(fp,"inputrec->expandedvals->lmc-gibbsdelta",-1,expand1->gibbsdeltalam,expand2->gibbsdeltalam);
528 cmp_int(fp,"inputrec->expandedvals->lmc-forced-nstart",-1,expand1->lmc_forced_nstart,expand2->lmc_forced_nstart);
529 cmp_int(fp,"inputrec->expandedvals->lambda-weights-equil",-1,expand1->elmceq,expand2->elmceq);
530 cmp_int(fp,"inputrec->expandedvals->,weight-equil-number-all-lambda",-1,expand1->equil_n_at_lam,expand2->equil_n_at_lam);
531 cmp_int(fp,"inputrec->expandedvals->weight-equil-number-samples",-1,expand1->equil_samples,expand2->equil_samples);
532 cmp_int(fp,"inputrec->expandedvals->weight-equil-number-steps",-1,expand1->equil_steps,expand2->equil_steps);
533 cmp_real(fp,"inputrec->expandedvals->weight-equil-wl-delta",-1,expand1->equil_wl_delta,expand2->equil_wl_delta,ftol,abstol);
534 cmp_real(fp,"inputrec->expandedvals->weight-equil-count-ratio",-1,expand1->equil_ratio,expand2->equil_ratio,ftol,abstol);
535 cmp_bool(fp,"inputrec->expandedvals->symmetrized-transition-matrix",-1,expand1->bSymmetrizedTMatrix,expand2->bSymmetrizedTMatrix);
536 cmp_int(fp,"inputrec->expandedvals->nstTij",-1,expand1->nstTij,expand2->nstTij);
537 cmp_int(fp,"inputrec->expandedvals->mininum-var-min",-1,expand1->minvarmin,expand2->minvarmin); /*default is reasonable */
538 cmp_int(fp,"inputrec->expandedvals->weight-c-range",-1,expand1->c_range,expand2->c_range); /* default is just C=0 */
539 cmp_real(fp,"inputrec->expandedvals->wl-scale",-1,expand1->wl_scale,expand2->wl_scale,ftol,abstol);
540 cmp_real(fp,"inputrec->expandedvals->init-wl-delta",-1,expand1->init_wl_delta,expand2->init_wl_delta,ftol,abstol);
541 cmp_real(fp,"inputrec->expandedvals->wl-ratio",-1,expand1->wl_ratio,expand2->wl_ratio,ftol,abstol);
542 cmp_int(fp,"inputrec->expandedvals->nstexpanded",-1,expand1->nstexpanded,expand2->nstexpanded);
543 cmp_int(fp,"inputrec->expandedvals->lmc-seed",-1,expand1->lmc_seed,expand2->lmc_seed);
544 cmp_real(fp,"inputrec->expandedvals->mc-temperature",-1,expand1->mc_temp,expand2->mc_temp,ftol,abstol);
547 static void cmp_fepvals(FILE *fp,t_lambda *fep1,t_lambda *fep2,real ftol, real abstol)
550 cmp_int(fp,"inputrec->nstdhdl",-1,fep1->nstdhdl,fep2->nstdhdl);
551 cmp_double(fp,"inputrec->fepvals->init_fep_state",-1,fep1->init_fep_state,fep2->init_fep_state,ftol,abstol);
552 cmp_double(fp,"inputrec->fepvals->delta_lambda",-1,fep1->delta_lambda,fep2->delta_lambda,ftol,abstol);
553 cmp_int(fp,"inputrec->fepvals->n_lambda",-1,fep1->n_lambda,fep2->n_lambda);
554 for(i=0; i<efptNR;i++)
556 for(j=0; j<min(fep1->n_lambda,fep2->n_lambda); j++)
558 cmp_double(fp,"inputrec->fepvals->all_lambda",-1,fep1->all_lambda[i][j],fep2->all_lambda[i][j],ftol,abstol);
561 cmp_real(fp,"inputrec->fepvals->sc_alpha",-1,fep1->sc_alpha,fep2->sc_alpha,ftol,abstol);
562 cmp_int(fp,"inputrec->fepvals->sc_power",-1,fep1->sc_power,fep2->sc_power);
563 cmp_real(fp,"inputrec->fepvals->sc_r_power",-1,fep1->sc_r_power,fep2->sc_r_power,ftol,abstol);
564 cmp_real(fp,"inputrec->fepvals->sc_sigma",-1,fep1->sc_sigma,fep2->sc_sigma,ftol,abstol);
565 cmp_bool(fp,"inputrec->fepvals->bPrintEnergy",-1,fep1->bPrintEnergy,fep1->bPrintEnergy);
566 cmp_bool(fp,"inputrec->fepvals->bScCoul",-1,fep1->bScCoul,fep1->bScCoul);
567 cmp_int(fp,"inputrec->separate_dhdl_file",-1,fep1->separate_dhdl_file,fep2->separate_dhdl_file);
568 cmp_int(fp,"inputrec->dhdl_derivatives",-1,fep1->dhdl_derivatives,fep2->dhdl_derivatives);
569 cmp_int(fp,"inputrec->dh_hist_size",-1,fep1->dh_hist_size,fep2->dh_hist_size);
570 cmp_double(fp,"inputrec->dh_hist_spacing",-1,fep1->dh_hist_spacing,fep2->dh_hist_spacing,ftol,abstol);
573 static void cmp_inputrec(FILE *fp,t_inputrec *ir1,t_inputrec *ir2,real ftol, real abstol)
575 fprintf(fp,"comparing inputrec\n");
577 /* gcc 2.96 doesnt like these defines at all, but issues a huge list
578 * of warnings. Maybe it will change in future versions, but for the
579 * moment I've spelled them out instead. /EL 000820
580 * #define CIB(s) cmp_int(fp,"inputrec->"#s,0,ir1->##s,ir2->##s)
581 * #define CII(s) cmp_int(fp,"inputrec->"#s,0,ir1->##s,ir2->##s)
582 * #define CIR(s) cmp_real(fp,"inputrec->"#s,0,ir1->##s,ir2->##s,ftol)
584 cmp_int(fp,"inputrec->eI",-1,ir1->eI,ir2->eI);
585 cmp_gmx_large_int(fp,"inputrec->nsteps",ir1->nsteps,ir2->nsteps);
586 cmp_gmx_large_int(fp,"inputrec->init_step",ir1->init_step,ir2->init_step);
587 cmp_int(fp,"inputrec->simulation_part",-1,ir1->simulation_part,ir2->simulation_part);
588 cmp_int(fp,"inputrec->ePBC",-1,ir1->ePBC,ir2->ePBC);
589 cmp_int(fp,"inputrec->bPeriodicMols",-1,ir1->bPeriodicMols,ir2->bPeriodicMols);
590 cmp_int(fp,"inputrec->cutoff_scheme",-1,ir1->cutoff_scheme,ir2->cutoff_scheme);
591 cmp_int(fp,"inputrec->ns_type",-1,ir1->ns_type,ir2->ns_type);
592 cmp_int(fp,"inputrec->nstlist",-1,ir1->nstlist,ir2->nstlist);
593 cmp_int(fp,"inputrec->ndelta",-1,ir1->ndelta,ir2->ndelta);
594 cmp_int(fp,"inputrec->nstcomm",-1,ir1->nstcomm,ir2->nstcomm);
595 cmp_int(fp,"inputrec->comm_mode",-1,ir1->comm_mode,ir2->comm_mode);
596 cmp_int(fp,"inputrec->nstcheckpoint",-1,ir1->nstcheckpoint,ir2->nstcheckpoint);
597 cmp_int(fp,"inputrec->nstlog",-1,ir1->nstlog,ir2->nstlog);
598 cmp_int(fp,"inputrec->nstxout",-1,ir1->nstxout,ir2->nstxout);
599 cmp_int(fp,"inputrec->nstvout",-1,ir1->nstvout,ir2->nstvout);
600 cmp_int(fp,"inputrec->nstfout",-1,ir1->nstfout,ir2->nstfout);
601 cmp_int(fp,"inputrec->nstcalcenergy",-1,ir1->nstcalcenergy,ir2->nstcalcenergy);
602 cmp_int(fp,"inputrec->nstenergy",-1,ir1->nstenergy,ir2->nstenergy);
603 cmp_int(fp,"inputrec->nstxtcout",-1,ir1->nstxtcout,ir2->nstxtcout);
604 cmp_double(fp,"inputrec->init_t",-1,ir1->init_t,ir2->init_t,ftol,abstol);
605 cmp_double(fp,"inputrec->delta_t",-1,ir1->delta_t,ir2->delta_t,ftol,abstol);
606 cmp_real(fp,"inputrec->xtcprec",-1,ir1->xtcprec,ir2->xtcprec,ftol,abstol);
607 cmp_real(fp,"inputrec->fourierspacing",-1,ir1->fourier_spacing,ir2->fourier_spacing,ftol,abstol);
608 cmp_int(fp,"inputrec->nkx",-1,ir1->nkx,ir2->nkx);
609 cmp_int(fp,"inputrec->nky",-1,ir1->nky,ir2->nky);
610 cmp_int(fp,"inputrec->nkz",-1,ir1->nkz,ir2->nkz);
611 cmp_int(fp,"inputrec->pme_order",-1,ir1->pme_order,ir2->pme_order);
612 cmp_real(fp,"inputrec->ewald_rtol",-1,ir1->ewald_rtol,ir2->ewald_rtol,ftol,abstol);
613 cmp_int(fp,"inputrec->ewald_geometry",-1,ir1->ewald_geometry,ir2->ewald_geometry);
614 cmp_real(fp,"inputrec->epsilon_surface",-1,ir1->epsilon_surface,ir2->epsilon_surface,ftol,abstol);
615 cmp_int(fp,"inputrec->bOptFFT",-1,ir1->bOptFFT,ir2->bOptFFT);
616 cmp_int(fp,"inputrec->bContinuation",-1,ir1->bContinuation,ir2->bContinuation);
617 cmp_int(fp,"inputrec->bShakeSOR",-1,ir1->bShakeSOR,ir2->bShakeSOR);
618 cmp_int(fp,"inputrec->etc",-1,ir1->etc,ir2->etc);
619 cmp_int(fp,"inputrec->bPrintNHChains",-1,ir1->bPrintNHChains,ir2->bPrintNHChains);
620 cmp_int(fp,"inputrec->epc",-1,ir1->epc,ir2->epc);
621 cmp_int(fp,"inputrec->epct",-1,ir1->epct,ir2->epct);
622 cmp_real(fp,"inputrec->tau_p",-1,ir1->tau_p,ir2->tau_p,ftol,abstol);
623 cmp_rvec(fp,"inputrec->ref_p(x)",-1,ir1->ref_p[XX],ir2->ref_p[XX],ftol,abstol);
624 cmp_rvec(fp,"inputrec->ref_p(y)",-1,ir1->ref_p[YY],ir2->ref_p[YY],ftol,abstol);
625 cmp_rvec(fp,"inputrec->ref_p(z)",-1,ir1->ref_p[ZZ],ir2->ref_p[ZZ],ftol,abstol);
626 cmp_rvec(fp,"inputrec->compress(x)",-1,ir1->compress[XX],ir2->compress[XX],ftol,abstol);
627 cmp_rvec(fp,"inputrec->compress(y)",-1,ir1->compress[YY],ir2->compress[YY],ftol,abstol);
628 cmp_rvec(fp,"inputrec->compress(z)",-1,ir1->compress[ZZ],ir2->compress[ZZ],ftol,abstol);
629 cmp_int(fp,"refcoord_scaling",-1,ir1->refcoord_scaling,ir2->refcoord_scaling);
630 cmp_rvec(fp,"inputrec->posres_com",-1,ir1->posres_com,ir2->posres_com,ftol,abstol);
631 cmp_rvec(fp,"inputrec->posres_comB",-1,ir1->posres_comB,ir2->posres_comB,ftol,abstol);
632 cmp_real(fp,"inputrec->verletbuf_drift",-1,ir1->verletbuf_drift,ir2->verletbuf_drift,ftol,abstol);
633 cmp_real(fp,"inputrec->rlist",-1,ir1->rlist,ir2->rlist,ftol,abstol);
634 cmp_real(fp,"inputrec->rlistlong",-1,ir1->rlistlong,ir2->rlistlong,ftol,abstol);
635 cmp_real(fp,"inputrec->rtpi",-1,ir1->rtpi,ir2->rtpi,ftol,abstol);
636 cmp_int(fp,"inputrec->coulombtype",-1,ir1->coulombtype,ir2->coulombtype);
637 cmp_real(fp,"inputrec->rcoulomb_switch",-1,ir1->rcoulomb_switch,ir2->rcoulomb_switch,ftol,abstol);
638 cmp_real(fp,"inputrec->rcoulomb",-1,ir1->rcoulomb,ir2->rcoulomb,ftol,abstol);
639 cmp_int(fp,"inputrec->vdwtype",-1,ir1->vdwtype,ir2->vdwtype);
640 cmp_real(fp,"inputrec->rvdw_switch",-1,ir1->rvdw_switch,ir2->rvdw_switch,ftol,abstol);
641 cmp_real(fp,"inputrec->rvdw",-1,ir1->rvdw,ir2->rvdw,ftol,abstol);
642 cmp_real(fp,"inputrec->epsilon_r",-1,ir1->epsilon_r,ir2->epsilon_r,ftol,abstol);
643 cmp_real(fp,"inputrec->epsilon_rf",-1,ir1->epsilon_rf,ir2->epsilon_rf,ftol,abstol);
644 cmp_real(fp,"inputrec->tabext",-1,ir1->tabext,ir2->tabext,ftol,abstol);
645 cmp_int(fp,"inputrec->implicit_solvent",-1,ir1->implicit_solvent,ir2->implicit_solvent);
646 cmp_int(fp,"inputrec->gb_algorithm",-1,ir1->gb_algorithm,ir2->gb_algorithm);
647 cmp_int(fp,"inputrec->nstgbradii",-1,ir1->nstgbradii,ir2->nstgbradii);
648 cmp_real(fp,"inputrec->rgbradii",-1,ir1->rgbradii,ir2->rgbradii,ftol,abstol);
649 cmp_real(fp,"inputrec->gb_saltconc",-1,ir1->gb_saltconc,ir2->gb_saltconc,ftol,abstol);
650 cmp_real(fp,"inputrec->gb_epsilon_solvent",-1,ir1->gb_epsilon_solvent,ir2->gb_epsilon_solvent,ftol,abstol);
651 cmp_real(fp,"inputrec->gb_obc_alpha",-1,ir1->gb_obc_alpha,ir2->gb_obc_alpha,ftol,abstol);
652 cmp_real(fp,"inputrec->gb_obc_beta",-1,ir1->gb_obc_beta,ir2->gb_obc_beta,ftol,abstol);
653 cmp_real(fp,"inputrec->gb_obc_gamma",-1,ir1->gb_obc_gamma,ir2->gb_obc_gamma,ftol,abstol);
654 cmp_real(fp,"inputrec->gb_dielectric_offset",-1,ir1->gb_dielectric_offset,ir2->gb_dielectric_offset,ftol,abstol);
655 cmp_int(fp,"inputrec->sa_algorithm",-1,ir1->sa_algorithm,ir2->sa_algorithm);
656 cmp_real(fp,"inputrec->sa_surface_tension",-1,ir1->sa_surface_tension,ir2->sa_surface_tension,ftol,abstol);
658 cmp_int(fp,"inputrec->eDispCorr",-1,ir1->eDispCorr,ir2->eDispCorr);
659 cmp_real(fp,"inputrec->shake_tol",-1,ir1->shake_tol,ir2->shake_tol,ftol,abstol);
660 cmp_int(fp,"inputrec->efep",-1,ir1->efep,ir2->efep);
661 cmp_fepvals(fp,ir1->fepvals,ir2->fepvals,ftol,abstol);
662 cmp_int(fp,"inputrec->bSimTemp",-1,ir1->bSimTemp,ir2->bSimTemp);
663 if ((ir1->bSimTemp == ir2->bSimTemp) && (ir1->bSimTemp))
665 cmp_simtempvals(fp,ir1->simtempvals,ir2->simtempvals,min(ir1->fepvals->n_lambda,ir2->fepvals->n_lambda),ftol,abstol);
667 cmp_int(fp,"inputrec->bExpanded",-1,ir1->bExpanded,ir2->bExpanded);
668 if ((ir1->bExpanded == ir2->bExpanded) && (ir1->bExpanded))
670 cmp_expandedvals(fp,ir1->expandedvals,ir2->expandedvals,min(ir1->fepvals->n_lambda,ir2->fepvals->n_lambda),ftol,abstol);
672 cmp_int(fp,"inputrec->nwall",-1,ir1->nwall,ir2->nwall);
673 cmp_int(fp,"inputrec->wall_type",-1,ir1->wall_type,ir2->wall_type);
674 cmp_int(fp,"inputrec->wall_atomtype[0]",-1,ir1->wall_atomtype[0],ir2->wall_atomtype[0]);
675 cmp_int(fp,"inputrec->wall_atomtype[1]",-1,ir1->wall_atomtype[1],ir2->wall_atomtype[1]);
676 cmp_real(fp,"inputrec->wall_density[0]",-1,ir1->wall_density[0],ir2->wall_density[0],ftol,abstol);
677 cmp_real(fp,"inputrec->wall_density[1]",-1,ir1->wall_density[1],ir2->wall_density[1],ftol,abstol);
678 cmp_real(fp,"inputrec->wall_ewald_zfac",-1,ir1->wall_ewald_zfac,ir2->wall_ewald_zfac,ftol,abstol);
680 cmp_int(fp,"inputrec->ePull",-1,ir1->ePull,ir2->ePull);
681 if (ir1->ePull == ir2->ePull && ir1->ePull != epullNO)
682 cmp_pull(fp,ir1->pull,ir2->pull,ftol,abstol);
684 cmp_int(fp,"inputrec->eDisre",-1,ir1->eDisre,ir2->eDisre);
685 cmp_real(fp,"inputrec->dr_fc",-1,ir1->dr_fc,ir2->dr_fc,ftol,abstol);
686 cmp_int(fp,"inputrec->eDisreWeighting",-1,ir1->eDisreWeighting,ir2->eDisreWeighting);
687 cmp_int(fp,"inputrec->bDisreMixed",-1,ir1->bDisreMixed,ir2->bDisreMixed);
688 cmp_int(fp,"inputrec->nstdisreout",-1,ir1->nstdisreout,ir2->nstdisreout);
689 cmp_real(fp,"inputrec->dr_tau",-1,ir1->dr_tau,ir2->dr_tau,ftol,abstol);
690 cmp_real(fp,"inputrec->orires_fc",-1,ir1->orires_fc,ir2->orires_fc,ftol,abstol);
691 cmp_real(fp,"inputrec->orires_tau",-1,ir1->orires_tau,ir2->orires_tau,ftol,abstol);
692 cmp_int(fp,"inputrec->nstorireout",-1,ir1->nstorireout,ir2->nstorireout);
693 cmp_real(fp,"inputrec->dihre_fc",-1,ir1->dihre_fc,ir2->dihre_fc,ftol,abstol);
694 cmp_real(fp,"inputrec->em_stepsize",-1,ir1->em_stepsize,ir2->em_stepsize,ftol,abstol);
695 cmp_real(fp,"inputrec->em_tol",-1,ir1->em_tol,ir2->em_tol,ftol,abstol);
696 cmp_int(fp,"inputrec->niter",-1,ir1->niter,ir2->niter);
697 cmp_real(fp,"inputrec->fc_stepsize",-1,ir1->fc_stepsize,ir2->fc_stepsize,ftol,abstol);
698 cmp_int(fp,"inputrec->nstcgsteep",-1,ir1->nstcgsteep,ir2->nstcgsteep);
699 cmp_int(fp,"inputrec->nbfgscorr",0,ir1->nbfgscorr,ir2->nbfgscorr);
700 cmp_int(fp,"inputrec->eConstrAlg",-1,ir1->eConstrAlg,ir2->eConstrAlg);
701 cmp_int(fp,"inputrec->nProjOrder",-1,ir1->nProjOrder,ir2->nProjOrder);
702 cmp_real(fp,"inputrec->LincsWarnAngle",-1,ir1->LincsWarnAngle,ir2->LincsWarnAngle,ftol,abstol);
703 cmp_int(fp,"inputrec->nLincsIter",-1,ir1->nLincsIter,ir2->nLincsIter);
704 cmp_real(fp,"inputrec->bd_fric",-1,ir1->bd_fric,ir2->bd_fric,ftol,abstol);
705 cmp_int(fp,"inputrec->ld_seed",-1,ir1->ld_seed,ir2->ld_seed);
706 cmp_real(fp,"inputrec->cos_accel",-1,ir1->cos_accel,ir2->cos_accel,ftol,abstol);
707 cmp_rvec(fp,"inputrec->deform(a)",-1,ir1->deform[XX],ir2->deform[XX],ftol,abstol);
708 cmp_rvec(fp,"inputrec->deform(b)",-1,ir1->deform[YY],ir2->deform[YY],ftol,abstol);
709 cmp_rvec(fp,"inputrec->deform(c)",-1,ir1->deform[ZZ],ir2->deform[ZZ],ftol,abstol);
712 cmp_bool(fp,"ir->bAdress->type" ,-1,ir1->bAdress,ir2->bAdress);
713 if (ir1->bAdress && ir2->bAdress) {
714 cmp_adress(fp,ir1->adress,ir2->adress,ftol,abstol);
717 cmp_int(fp,"inputrec->userint1",-1,ir1->userint1,ir2->userint1);
718 cmp_int(fp,"inputrec->userint2",-1,ir1->userint2,ir2->userint2);
719 cmp_int(fp,"inputrec->userint3",-1,ir1->userint3,ir2->userint3);
720 cmp_int(fp,"inputrec->userint4",-1,ir1->userint4,ir2->userint4);
721 cmp_real(fp,"inputrec->userreal1",-1,ir1->userreal1,ir2->userreal1,ftol,abstol);
722 cmp_real(fp,"inputrec->userreal2",-1,ir1->userreal2,ir2->userreal2,ftol,abstol);
723 cmp_real(fp,"inputrec->userreal3",-1,ir1->userreal3,ir2->userreal3,ftol,abstol);
724 cmp_real(fp,"inputrec->userreal4",-1,ir1->userreal4,ir2->userreal4,ftol,abstol);
725 cmp_grpopts(fp,&(ir1->opts),&(ir2->opts),ftol,abstol);
726 cmp_cosines(fp,"ex",ir1->ex,ir2->ex,ftol,abstol);
727 cmp_cosines(fp,"et",ir1->et,ir2->et,ftol,abstol);
730 static void comp_pull_AB(FILE *fp,t_pull *pull,real ftol,real abstol)
734 for(i=0; i<pull->ngrp+1; i++) {
735 fprintf(fp,"comparing pull group %d\n",i);
736 cmp_real(fp,"pullgrp->k",-1,pull->grp[i].k,pull->grp[i].kB,ftol,abstol);
740 static void comp_state(t_state *st1, t_state *st2,
741 gmx_bool bRMSD,real ftol,real abstol)
745 fprintf(stdout,"comparing flags\n");
746 cmp_int(stdout,"flags",-1,st1->flags,st2->flags);
747 fprintf(stdout,"comparing box\n");
748 cmp_rvecs(stdout,"box",DIM,st1->box,st2->box,FALSE,ftol,abstol);
749 fprintf(stdout,"comparing box_rel\n");
750 cmp_rvecs(stdout,"box_rel",DIM,st1->box_rel,st2->box_rel,FALSE,ftol,abstol);
751 fprintf(stdout,"comparing boxv\n");
752 cmp_rvecs(stdout,"boxv",DIM,st1->boxv,st2->boxv,FALSE,ftol,abstol);
753 if (st1->flags & (1<<estSVIR_PREV)) {
754 fprintf(stdout,"comparing shake vir_prev\n");
755 cmp_rvecs(stdout,"svir_prev",DIM,st1->svir_prev,st2->svir_prev,FALSE,ftol,abstol);
757 if (st1->flags & (1<<estFVIR_PREV)) {
758 fprintf(stdout,"comparing force vir_prev\n");
759 cmp_rvecs(stdout,"fvir_prev",DIM,st1->fvir_prev,st2->fvir_prev,FALSE,ftol,abstol);
761 if (st1->flags & (1<<estPRES_PREV)) {
762 fprintf(stdout,"comparing prev_pres\n");
763 cmp_rvecs(stdout,"pres_prev",DIM,st1->pres_prev,st2->pres_prev,FALSE,ftol,abstol);
765 cmp_int(stdout,"ngtc",-1,st1->ngtc,st2->ngtc);
766 cmp_int(stdout,"nhchainlength",-1,st1->nhchainlength,st2->nhchainlength);
767 if (st1->ngtc == st2->ngtc && st1->nhchainlength == st2->nhchainlength){
768 for(i=0; i<st1->ngtc; i++) {
769 nc = i*st1->nhchainlength;
770 for(j=0; j<nc; j++) {
771 cmp_real(stdout,"nosehoover_xi",
772 i,st1->nosehoover_xi[nc+j],st2->nosehoover_xi[nc+j],ftol,abstol);
776 cmp_int(stdout,"nnhpres",-1,st1->nnhpres,st2->nnhpres);
777 if (st1->nnhpres == st2->nnhpres && st1->nhchainlength == st2->nhchainlength) {
778 for(i=0; i<st1->nnhpres; i++) {
779 nc = i*st1->nhchainlength;
780 for(j=0; j<nc; j++) {
781 cmp_real(stdout,"nosehoover_xi",
782 i,st1->nhpres_xi[nc+j],st2->nhpres_xi[nc+j],ftol,abstol);
787 cmp_int(stdout,"natoms",-1,st1->natoms,st2->natoms);
788 if (st1->natoms == st2->natoms) {
789 if ((st1->flags & (1<<estX)) && (st2->flags & (1<<estX))) {
790 fprintf(stdout,"comparing x\n");
791 cmp_rvecs(stdout,"x",st1->natoms,st1->x,st2->x,bRMSD,ftol,abstol);
793 if ((st1->flags & (1<<estV)) && (st2->flags & (1<<estV))) {
794 fprintf(stdout,"comparing v\n");
795 cmp_rvecs(stdout,"v",st1->natoms,st1->v,st2->v,bRMSD,ftol,abstol);
800 void comp_tpx(const char *fn1,const char *fn2,
801 gmx_bool bRMSD,real ftol,real abstol)
813 for(i=0; i<(fn2 ? 2 : 1); i++) {
814 read_tpx_state(ff[i],&(ir[i]),&state[i],NULL,&(mtop[i]));
817 cmp_inputrec(stdout,&ir[0],&ir[1],ftol,abstol);
818 /* Convert gmx_mtop_t to t_topology.
819 * We should implement direct mtop comparison,
820 * but it might be useful to keep t_topology comparison as an option.
822 top[0] = gmx_mtop_t_to_t_topology(&mtop[0]);
823 top[1] = gmx_mtop_t_to_t_topology(&mtop[1]);
824 cmp_top(stdout,&top[0],&top[1],ftol,abstol);
825 cmp_groups(stdout,&mtop[0].groups,&mtop[1].groups,
826 mtop[0].natoms,mtop[1].natoms);
827 comp_state(&state[0],&state[1],bRMSD,ftol,abstol);
829 if (ir[0].efep == efepNO) {
830 fprintf(stdout,"inputrec->efep = %s\n",efep_names[ir[0].efep]);
832 if (ir[0].ePull != epullNO) {
833 comp_pull_AB(stdout,ir->pull,ftol,abstol);
835 /* Convert gmx_mtop_t to t_topology.
836 * We should implement direct mtop comparison,
837 * but it might be useful to keep t_topology comparison as an option.
839 top[0] = gmx_mtop_t_to_t_topology(&mtop[0]);
840 cmp_top(stdout,&top[0],NULL,ftol,abstol);
845 void comp_frame(FILE *fp, t_trxframe *fr1, t_trxframe *fr2,
846 gmx_bool bRMSD, real ftol,real abstol)
849 cmp_int(fp,"flags",-1,fr1->flags,fr2->flags);
850 cmp_int(fp,"not_ok",-1,fr1->not_ok,fr2->not_ok);
851 cmp_int(fp,"natoms",-1,fr1->natoms,fr2->natoms);
852 cmp_real(fp,"t0",-1,fr1->t0,fr2->t0,ftol,abstol);
853 if (cmp_bool(fp,"bTitle",-1,fr1->bTitle,fr2->bTitle))
854 cmp_str(fp,"title", -1, fr1->title, fr2->title);
855 if (cmp_bool(fp,"bStep",-1,fr1->bStep,fr2->bStep))
856 cmp_int(fp,"step",-1,fr1->step,fr2->step);
857 cmp_int(fp,"step",-1,fr1->step,fr2->step);
858 if (cmp_bool(fp,"bTime",-1,fr1->bTime,fr2->bTime))
859 cmp_real(fp,"time",-1,fr1->time,fr2->time,ftol,abstol);
860 if (cmp_bool(fp,"bLambda",-1,fr1->bLambda,fr2->bLambda))
861 cmp_real(fp,"lambda",-1,fr1->lambda,fr2->lambda,ftol,abstol);
862 if (cmp_bool(fp,"bAtoms",-1,fr1->bAtoms,fr2->bAtoms))
863 cmp_atoms(fp,fr1->atoms,fr2->atoms,ftol,abstol);
864 if (cmp_bool(fp,"bPrec",-1,fr1->bPrec,fr2->bPrec))
865 cmp_real(fp,"prec",-1,fr1->prec,fr2->prec,ftol,abstol);
866 if (cmp_bool(fp,"bX",-1,fr1->bX,fr2->bX))
867 cmp_rvecs(fp,"x",min(fr1->natoms,fr2->natoms),fr1->x,fr2->x,bRMSD,ftol,abstol);
868 if (cmp_bool(fp,"bV",-1,fr1->bV,fr2->bV))
869 cmp_rvecs(fp,"v",min(fr1->natoms,fr2->natoms),fr1->v,fr2->v,bRMSD,ftol,abstol);
870 if (cmp_bool(fp,"bF",-1,fr1->bF,fr2->bF))
871 cmp_rvecs(fp,"f",min(fr1->natoms,fr2->natoms),fr1->f,fr2->f,bRMSD,ftol,abstol);
872 if (cmp_bool(fp,"bBox",-1,fr1->bBox,fr2->bBox))
873 cmp_rvecs(fp,"box",3,fr1->box,fr2->box,FALSE,ftol,abstol);
876 void comp_trx(const output_env_t oenv,const char *fn1, const char *fn2,
877 gmx_bool bRMSD,real ftol,real abstol)
882 t_trxstatus *status[2];
887 fprintf(stderr,"Comparing trajectory files %s and %s\n",fn1,fn2);
889 b[i] = read_first_frame(oenv,&status[i],fn[i],&fr[i],TRX_READ_X|TRX_READ_V|TRX_READ_F);
893 comp_frame(stdout, &(fr[0]), &(fr[1]), bRMSD, ftol, abstol);
896 b[i] = read_next_frame(oenv,status[i],&fr[i]);
897 } while (b[0] && b[1]);
899 for (i=0; i<2; i++) {
901 fprintf(stdout,"\nEnd of file on %s but not on %s\n",fn[1-i],fn[i]);
902 close_trj(status[i]);
906 fprintf(stdout,"\nBoth files read correctly\n");
909 static real ener_tensor_diag(int n,int *ind1,int *ind2,
912 t_energy e1[],t_energy e2[])
921 d2 = tensi[i] - d1*DIM;
923 /* Find the diagonal elements d1 and d2 */
924 len = strlen(enm1[ind1[i]].name);
930 strlen(enm1[ind1[j]].name) == len &&
931 strncmp(enm1[ind1[i]].name,enm1[ind1[j]].name,len-2) == 0 &&
932 (tensi[j] == d1*DIM+d1 || tensi[j] == d2*DIM+d2)) {
933 prod1 *= fabs(e1[ind1[j]].e);
934 prod2 *= fabs(e2[ind2[j]].e);
940 return 0.5*(sqrt(prod1) + sqrt(prod2));
946 static gmx_bool enernm_equal(const char *nm1,const char *nm2)
953 /* Remove " (bar)" at the end of a name */
954 if (len1 > 6 && strcmp(nm1+len1-6," (bar)") == 0) {
957 if (len2 > 6 && strcmp(nm2+len2-6," (bar)") == 0) {
961 return (len1 == len2 && gmx_strncasecmp(nm1,nm2,len1) == 0);
964 static void cmp_energies(FILE *fp,int step1,int step2,
965 t_energy e1[],t_energy e2[],
966 gmx_enxnm_t *enm1,gmx_enxnm_t *enm2,
967 real ftol,real abstol,
968 int nre,int *ind1,int *ind2,int maxener)
971 int *tensi,len,d1,d2;
972 real ftol_i,abstol_i;
975 /* Check for tensor elements ending on "-XX", "-XY", ... , "-ZZ" */
976 for(i=0; (i<maxener); i++) {
979 len = strlen(enm1[ii].name);
980 if (len > 3 && enm1[ii].name[len-3] == '-') {
981 d1 = enm1[ii].name[len-2] - 'X';
982 d2 = enm1[ii].name[len-1] - 'X';
983 if (d1 >= 0 && d1 < DIM &&
984 d2 >= 0 && d2 < DIM) {
985 tensi[i] = d1*DIM + d2;
990 for(i=0; (i<maxener); i++) {
991 /* Check if this is an off-diagonal tensor element */
992 if (tensi[i] >= 0 && tensi[i] != 0 && tensi[i] != 4 && tensi[i] != 8) {
993 /* Turn on the relative tolerance check (4 is maximum relative diff.) */
995 /* Do the relative tolerance through an absolute tolerance times
996 * the size of diagonal components of the tensor.
998 abstol_i = ftol*ener_tensor_diag(nre,ind1,ind2,enm1,tensi,i,e1,e2);
1000 fprintf(debug,"tensor '%s' val %f diag %f\n",
1001 enm1[i].name,e1[i].e,abstol_i/ftol);
1004 /* We found a diagonal, we need to check with the minimum tolerance */
1005 abstol_i = min(abstol_i,abstol);
1007 /* We did not find a diagonal, ignore the relative tolerance check */
1014 if (!equal_real(e1[ind1[i]].e,e2[ind2[i]].e,ftol_i,abstol_i)) {
1015 fprintf(fp,"%-15s step %3d: %12g, step %3d: %12g\n",
1017 step1,e1[ind1[i]].e,
1018 step2,e2[ind2[i]].e);
1026 static void cmp_disres(t_enxframe *fr1,t_enxframe *fr2,real ftol, real abstol)
1029 char bav[64],bt[64],bs[22];
1031 cmp_int(stdout,"ndisre",-1,fr1->ndisre,fr2->ndisre);
1032 if ((fr1->ndisre == fr2->ndisre) && (fr1->ndisre > 0)) {
1033 sprintf(bav,"step %s: disre rav",gmx_step_str(fr1->step,bs));
1034 sprintf(bt, "step %s: disre rt",gmx_step_str(fr1->step,bs));
1035 for(i=0; (i<fr1->ndisre); i++) {
1036 cmp_real(stdout,bav,i,fr1->disre_rm3tav[i],fr2->disre_rm3tav[i],ftol,abstol);
1037 cmp_real(stdout,bt ,i,fr1->disre_rt[i] ,fr2->disre_rt[i] ,ftol,abstol);
1043 static void cmp_eblocks(t_enxframe *fr1,t_enxframe *fr2,real ftol, real abstol)
1046 char buf[64],bs[22];
1048 cmp_int(stdout,"nblock",-1,fr1->nblock,fr2->nblock);
1049 if ((fr1->nblock == fr2->nblock) && (fr1->nblock > 0))
1051 for(j=0; (j<fr1->nblock); j++)
1053 t_enxblock *b1, *b2; /* convenience vars */
1055 b1=&(fr1->block[j]);
1056 b2=&(fr2->block[j]);
1058 sprintf(buf,"step %s: block[%d]",gmx_step_str(fr1->step,bs),j);
1059 cmp_int(stdout,buf,-1,b1->nsub,b2->nsub);
1060 cmp_int(stdout,buf,-1,b1->id,b2->id);
1062 if ( (b1->nsub==b2->nsub) && (b1->id==b2->id) )
1064 for(i=0;i<b1->nsub;i++)
1066 t_enxsubblock *s1, *s2;
1071 cmp_int(stdout, buf, -1, (int)s1->type, (int)s2->type);
1072 cmp_gmx_large_int(stdout, buf, s1->nr, s2->nr);
1074 if ((s1->type == s2->type) && (s1->nr == s2->nr))
1078 case xdr_datatype_float:
1079 for(k=0;k<s1->nr;k++)
1081 cmp_float(stdout, buf, i,
1082 s1->fval[k], s2->fval[k],
1086 case xdr_datatype_double:
1087 for(k=0;k<s1->nr;k++)
1089 cmp_double(stdout, buf, i,
1090 s1->dval[k], s2->dval[k],
1094 case xdr_datatype_int:
1095 for(k=0;k<s1->nr;k++)
1097 cmp_int(stdout, buf, i,
1098 s1->ival[k], s2->ival[k]);
1101 case xdr_datatype_large_int:
1102 for(k=0;k<s1->nr;k++)
1104 cmp_gmx_large_int(stdout, buf,
1105 s1->lval[k], s2->lval[k]);
1108 case xdr_datatype_char:
1109 for(k=0;k<s1->nr;k++)
1111 cmp_uc(stdout, buf, i,
1112 s1->cval[k], s2->cval[k]);
1115 case xdr_datatype_string:
1116 for(k=0;k<s1->nr;k++)
1118 cmp_str(stdout, buf, i,
1119 s1->sval[k], s2->sval[k]);
1123 gmx_incons("Unknown data type!!");
1132 void comp_enx(const char *fn1,const char *fn2,real ftol,real abstol,const char *lastener)
1134 int nre,nre1,nre2,block;
1135 ener_file_t in1, in2;
1136 int i,j,maxener,*ind1,*ind2,*have;
1138 gmx_enxnm_t *enm1=NULL,*enm2=NULL;
1139 t_enxframe *fr1,*fr2;
1142 fprintf(stdout,"comparing energy file %s and %s\n\n",fn1,fn2);
1144 in1 = open_enx(fn1,"r");
1145 in2 = open_enx(fn2,"r");
1146 do_enxnms(in1,&nre1,&enm1);
1147 do_enxnms(in2,&nre2,&enm2);
1149 fprintf(stdout,"There are %d and %d terms in the energy files\n\n",
1152 fprintf(stdout,"There are %d terms in the energy files\n\n",nre1);
1159 for(i=0; i<nre1; i++) {
1160 for(j=0; j<nre2; j++) {
1161 if (enernm_equal(enm1[i].name,enm2[j].name)) {
1169 if (nre == 0 || ind1[nre-1] != i) {
1170 cmp_str(stdout,"enm",i,enm1[i].name,"-");
1173 for(i=0; i<nre2; i++) {
1175 cmp_str(stdout,"enm",i,"-",enm2[i].name);
1180 for(i=0; i<nre; i++) {
1181 if ((lastener != NULL) && (strstr(enm1[i].name,lastener) != NULL)) {
1187 fprintf(stdout,"There are %d terms to compare in the energy files\n\n",
1190 for(i=0; i<maxener; i++) {
1191 cmp_str(stdout,"unit",i,enm1[ind1[i]].unit,enm2[ind2[i]].unit);
1197 b1 = do_enx(in1,fr1);
1198 b2 = do_enx(in2,fr2);
1200 fprintf(stdout,"\nEnd of file on %s but not on %s\n",fn2,fn1);
1202 fprintf(stdout,"\nEnd of file on %s but not on %s\n",fn1,fn2);
1203 else if (!b1 && !b2)
1204 fprintf(stdout,"\nFiles read successfully\n");
1206 cmp_real(stdout,"t",-1,fr1->t,fr2->t,ftol,abstol);
1207 cmp_int(stdout,"step",-1,fr1->step,fr2->step);
1208 /* We don't want to print the nre mismatch for every frame */
1209 /* cmp_int(stdout,"nre",-1,fr1->nre,fr2->nre); */
1210 if ((fr1->nre >= nre) && (fr2->nre >= nre))
1211 cmp_energies(stdout,fr1->step,fr1->step,fr1->ener,fr2->ener,
1212 enm1,enm2,ftol,abstol,nre,ind1,ind2,maxener);
1213 /*cmp_disres(fr1,fr2,ftol,abstol);*/
1214 cmp_eblocks(fr1,fr2,ftol,abstol);