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37 * \brief Declaration of low-level functions and fields of GPU state propagator object.
39 * \author Artem Zhmurov <zhmurov@gmail.com>
41 * \ingroup module_mdtypes
43 #ifndef GMX_MDTYPES_STATE_PROPAGATOR_DATA_GPU_IMPL_H
44 #define GMX_MDTYPES_STATE_PROPAGATOR_DATA_GPU_IMPL_H
50 #include "gromacs/gpu_utils/devicebuffer.h"
51 #if GMX_GPU == GMX_GPU_CUDA
52 #include "gromacs/gpu_utils/gpueventsynchronizer.cuh"
53 #elif GMX_GPU == GMX_GPU_OPENCL
54 #include "gromacs/gpu_utils/gpueventsynchronizer_ocl.h"
56 #include "gromacs/math/vectypes.h"
57 #include "gromacs/mdtypes/state_propagator_data_gpu.h"
58 #include "gromacs/utility/classhelpers.h"
59 #include "gromacs/utility/enumerationhelpers.h"
64 class StatePropagatorDataGpu::Impl
71 /*! \brief Constructor
73 * The buffers are reallocated only at the reinit call, the padding is
74 * used there for the coordinates buffer. It is needed for PME and added at
75 * the end of the buffer. It is assumed that if the rank has PME duties on the
76 * GPU, all coordinates are copied to the GPU and hence, for this rank, the
77 * coordinates buffer is not split into local and non-local ranges. For other
78 * ranks, the padding size is zero. This works because only one rank ever does
79 * PME work on the GPU, and if that rank also does PP work that is the only
80 * rank. So all coordinates are always transferred.
82 * In OpenCL, only pmeStream is used since it is the only stream created in
83 * PME context. The local and non-local streams are only needed when buffer
84 * ops are offloaded. This feature is currently not available in OpenCL and
85 * hence these streams are not set in these builds.
87 * \note In CUDA, the update stream is created in the constructor as a temporary
88 * solution, in place until the stream manager is introduced.
89 * Note that this makes it impossible to construct this object in CUDA
90 * builds executing on a host without any CUDA-capable device available.
92 * \note In CUDA, \p deviceContext is unused, hence always nullptr;
93 * all stream arguments can also be nullptr in runs where the
94 * respective streams are not required.
95 * In OpenCL, \p deviceContext needs to be a valid device context.
96 * In OpenCL runs StatePropagatorDataGpu is currently only used
97 * with PME offload, and only on ranks with PME duty. Hence, the
98 * \p pmeStream argument needs to be a valid OpenCL queue object
99 * which must have been created in \p deviceContext.
101 * \todo Make a \p CommandStream visible in the CPU parts of the code so we
102 * will not have to pass a void*.
103 * \todo Make a \p DeviceContext object visible in CPU parts of the code so we
104 * will not have to pass a void*.
106 * \param[in] pmeStream Device PME stream, nullptr allowed.
107 * \param[in] localStream Device NBNXM local stream, nullptr allowed.
108 * \param[in] nonLocalStream Device NBNXM non-local stream, nullptr allowed.
109 * \param[in] deviceContext Device context, nullptr allowed.
110 * \param[in] transferKind H2D/D2H transfer call behavior (synchronous or not).
111 * \param[in] paddingSize Padding size for coordinates buffer.
113 Impl(const void *pmeStream,
114 const void *localStream,
115 const void *nonLocalStream,
116 const void *deviceContext,
117 GpuApiCallBehavior transferKind,
123 /*! \brief Set the ranges for local and non-local atoms and reallocates buffers.
126 * The coordinates buffer is (re)allocated, when required by PME, with a padding,
127 * the size of which is set by the constructor. The padding region clearing kernel
128 * is scheduled in the \p pmeStream_ (unlike the coordinates H2D) as only the PME
129 * task uses this padding area.
131 * \param[in] numAtomsLocal Number of atoms in local domain.
132 * \param[in] numAtomsAll Total number of atoms to handle.
134 void reinit(int numAtomsLocal, int numAtomsAll);
136 /*! \brief Returns the range of atoms to be copied based on the copy type (all, local or non-local).
138 * \todo There are at least three versions of the function with this functionality in the code:
139 * this one and two more in NBNXM. These should be unified in a shape of a general function
142 * \param[in] atomLocality If all, local or non-local ranges are needed.
144 * \returns Tuple, containing the index of the first atom in the range and the total number of atoms in the range.
146 std::tuple<int, int> getAtomRangesFromAtomLocality(AtomLocality atomLocality);
149 /*! \brief Get the positions buffer on the GPU.
151 * \returns GPU positions buffer.
153 DeviceBuffer<float> getCoordinates();
155 /*! \brief Copy positions to the GPU memory.
157 * \param[in] h_x Positions in the host memory.
158 * \param[in] atomLocality Locality of the particles to copy.
160 void copyCoordinatesToGpu(gmx::ArrayRef<const gmx::RVec> h_x,
161 AtomLocality atomLocality);
163 /*! \brief Get the event synchronizer of the coordinates ready for the consumption on the device.
165 * Returns the event synchronizer which indicates that the coordinates are ready for the
166 * consumption on the device. Takes into account that the producer may be different.
168 * If the update is offloaded, and the current step is not a DD/search step, the returned
169 * synchronizer indicates the completion of GPU update-constraint kernels. Otherwise, on search
170 * steps and if update is not offloaded, the coordinates are provided by the H2D copy and the
171 * returned synchronizer indicates that the copy is complete.
173 * \param[in] atomLocality Locality of the particles to wait for.
174 * \param[in] simulationWork The simulation lifetime flags.
175 * \param[in] stepWork The step lifetime flags.
177 * \returns The event to synchronize the stream that consumes coordinates on device.
179 GpuEventSynchronizer* getCoordinatesReadyOnDeviceEvent(AtomLocality atomLocality,
180 const SimulationWorkload &simulationWork,
181 const StepWorkload &stepWork);
183 /*! \brief Getter for the event synchronizer for the update is done on th GPU
185 * \returns The event to synchronize the stream coordinates wre updated on device.
187 GpuEventSynchronizer* xUpdatedOnDevice();
189 /*! \brief Copy positions from the GPU memory.
191 * \param[in] h_x Positions buffer in the host memory.
192 * \param[in] atomLocality Locality of the particles to copy.
194 void copyCoordinatesFromGpu(gmx::ArrayRef<gmx::RVec> h_x,
195 AtomLocality atomLocality);
197 /*! \brief Wait until coordinates are available on the host.
199 * \param[in] atomLocality Locality of the particles to wait for.
201 void waitCoordinatesReadyOnHost(AtomLocality atomLocality);
204 /*! \brief Get the velocities buffer on the GPU.
206 * \returns GPU velocities buffer.
208 DeviceBuffer<float> getVelocities();
210 /*! \brief Copy velocities to the GPU memory.
212 * \param[in] h_v Velocities in the host memory.
213 * \param[in] atomLocality Locality of the particles to copy.
215 void copyVelocitiesToGpu(gmx::ArrayRef<const gmx::RVec> h_v,
216 AtomLocality atomLocality);
218 /*! \brief Get the event synchronizer on the H2D velocities copy.
220 * \param[in] atomLocality Locality of the particles to wait for.
222 * \returns The event to synchronize the stream that consumes velocities on device.
224 GpuEventSynchronizer* getVelocitiesReadyOnDeviceEvent(AtomLocality atomLocality);
226 /*! \brief Copy velocities from the GPU memory.
228 * \param[in] h_v Velocities buffer in the host memory.
229 * \param[in] atomLocality Locality of the particles to copy.
231 void copyVelocitiesFromGpu(gmx::ArrayRef<gmx::RVec> h_v,
232 AtomLocality atomLocality);
234 /*! \brief Wait until velocities are available on the host.
236 * \param[in] atomLocality Locality of the particles to wait for.
238 void waitVelocitiesReadyOnHost(AtomLocality atomLocality);
241 /*! \brief Get the force buffer on the GPU.
243 * \returns GPU force buffer.
245 DeviceBuffer<float> getForces();
247 /*! \brief Copy forces to the GPU memory.
249 * \param[in] h_f Forces in the host memory.
250 * \param[in] atomLocality Locality of the particles to copy.
252 void copyForcesToGpu(gmx::ArrayRef<const gmx::RVec> h_f,
253 AtomLocality atomLocality);
255 /*! \brief Get the event synchronizer on the H2D forces copy.
257 * \param[in] atomLocality Locality of the particles to wait for.
259 * \returns The event to synchronize the stream that consumes forces on device.
261 GpuEventSynchronizer* getForcesReadyOnDeviceEvent(AtomLocality atomLocality);
263 /*! \brief Copy forces from the GPU memory.
265 * \param[in] h_f Forces buffer in the host memory.
266 * \param[in] atomLocality Locality of the particles to copy.
268 void copyForcesFromGpu(gmx::ArrayRef<gmx::RVec> h_f,
269 AtomLocality atomLocality);
271 /*! \brief Wait until forces are available on the host.
273 * \param[in] atomLocality Locality of the particles to wait for.
275 void waitForcesReadyOnHost(AtomLocality atomLocality);
277 /*! \brief Getter for the update stream.
279 * \todo This is temporary here, until the management of this stream is taken over.
281 * \returns The device command stream to use in update-constraints.
283 void* getUpdateStream();
285 /*! \brief Getter for the number of local atoms.
287 * \returns The number of local atoms.
291 /*! \brief Getter for the total number of atoms.
293 * \returns The total number of atoms.
300 CommandStream pmeStream_ = nullptr;
301 //! GPU NBNXM local stream.
302 CommandStream localStream_ = nullptr;
303 //! GPU NBNXM non-local stream
304 CommandStream nonLocalStream_ = nullptr;
305 //! GPU Update-constreaints stream.
306 CommandStream updateStream_ = nullptr;
308 // Streams to use for coordinates H2D and D2H copies (one event for each atom locality)
309 EnumerationArray<AtomLocality, CommandStream> xCopyStreams_ = {{nullptr}};
310 // Streams to use for velocities H2D and D2H copies (one event for each atom locality)
311 EnumerationArray<AtomLocality, CommandStream> vCopyStreams_ = {{nullptr}};
312 // Streams to use for forces H2D and D2H copies (one event for each atom locality)
313 EnumerationArray<AtomLocality, CommandStream> fCopyStreams_ = {{nullptr}};
315 /*! \brief An array of events that indicate H2D copy is complete (one event for each atom locality)
317 * \todo Reconsider naming. It should be xCopiedToDevice or xH2DCopyComplete, etc.
319 EnumerationArray<AtomLocality, GpuEventSynchronizer> xReadyOnDevice_;
320 //! An event that the coordinates are ready after update-constraints execution
321 GpuEventSynchronizer xUpdatedOnDevice_;
322 //! An array of events that indicate D2H copy of coordinates is complete (one event for each atom locality)
323 EnumerationArray<AtomLocality, GpuEventSynchronizer> xReadyOnHost_;
325 //! An array of events that indicate H2D copy of velocities is complete (one event for each atom locality)
326 EnumerationArray<AtomLocality, GpuEventSynchronizer> vReadyOnDevice_;
327 //! An array of events that indicate D2H copy of velocities is complete (one event for each atom locality)
328 EnumerationArray<AtomLocality, GpuEventSynchronizer> vReadyOnHost_;
330 //! An array of events that indicate H2D copy of forces is complete (one event for each atom locality)
331 EnumerationArray<AtomLocality, GpuEventSynchronizer> fReadyOnDevice_;
332 //! An array of events that indicate D2H copy of forces is complete (one event for each atom locality)
333 EnumerationArray<AtomLocality, GpuEventSynchronizer> fReadyOnHost_;
335 /*! \brief GPU context (for OpenCL builds)
336 * \todo Make a Context class usable in CPU code
338 DeviceContext deviceContext_ = nullptr;
339 //! Default GPU calls behavior
340 GpuApiCallBehavior transferKind_ = GpuApiCallBehavior::Async;
341 //! Padding size for the coordinates buffer
342 int paddingSize_ = 0;
344 //! Number of local atoms
345 int numAtomsLocal_ = -1;
346 //! Total number of atoms
347 int numAtomsAll_ = -1;
349 //! Device positions buffer
350 DeviceBuffer<float> d_x_;
351 //! Number of particles saved in the positions buffer
353 //! Allocation size for the positions buffer
354 int d_xCapacity_ = -1;
356 //! Device velocities buffer
357 DeviceBuffer<float> d_v_;
358 //! Number of particles saved in the velocities buffer
360 //! Allocation size for the velocities buffer
361 int d_vCapacity_ = -1;
363 //! Device force buffer
364 DeviceBuffer<float> d_f_;
365 //! Number of particles saved in the force buffer
367 //! Allocation size for the force buffer
368 int d_fCapacity_ = -1;
370 /*! \brief Performs the copy of data from host to device buffer.
372 * \todo Template on locality.
374 * \param[out] d_data Device-side buffer.
375 * \param[in] h_data Host-side buffer.
376 * \param[in] dataSize Device-side data allocation size.
377 * \param[in] atomLocality If all, local or non-local ranges should be copied.
378 * \param[in] commandStream GPU stream to execute copy in.
380 void copyToDevice(DeviceBuffer<float> d_data,
381 gmx::ArrayRef<const gmx::RVec> h_data,
383 AtomLocality atomLocality,
384 CommandStream commandStream);
386 /*! \brief Performs the copy of data from device to host buffer.
388 * \param[out] h_data Host-side buffer.
389 * \param[in] d_data Device-side buffer.
390 * \param[in] dataSize Device-side data allocation size.
391 * \param[in] atomLocality If all, local or non-local ranges should be copied.
392 * \param[in] commandStream GPU stream to execute copy in.
394 void copyFromDevice(gmx::ArrayRef<gmx::RVec> h_data,
395 DeviceBuffer<float> d_data,
397 AtomLocality atomLocality,
398 CommandStream commandStream);
403 #endif // GMX_MDTYPES_STATE_PROPAGATOR_DATA_GPU_IMPL_H