2 <?xml-stylesheet type="text/xsl" href="referencedata.xsl"?>
4 <File Name="EnergyFile">
5 <Sequence Name="EnergyTerms">
6 <Int Name="Length">83</Int>
8 <String Name="Name">LJ-14</String>
9 <String Name="Units">kJ/mol</String>
12 <String Name="Name">Coulomb-14</String>
13 <String Name="Units">kJ/mol</String>
16 <String Name="Name">LJ (SR)</String>
17 <String Name="Units">kJ/mol</String>
20 <String Name="Name">Disper. corr.</String>
21 <String Name="Units">kJ/mol</String>
24 <String Name="Name">Coulomb (SR)</String>
25 <String Name="Units">kJ/mol</String>
28 <String Name="Name">Coul. recip.</String>
29 <String Name="Units">kJ/mol</String>
32 <String Name="Name">LJ recip.</String>
33 <String Name="Units">kJ/mol</String>
36 <String Name="Name">COM Pull En.</String>
37 <String Name="Units">kJ/mol</String>
41 <String Name="Name">Potential</String>
42 <String Name="Units">kJ/mol</String>
45 <String Name="Name">Kinetic En.</String>
46 <String Name="Units">kJ/mol</String>
49 <String Name="Name">Total Energy</String>
50 <String Name="Units">kJ/mol</String>
53 <String Name="Name">Conserved En.</String>
54 <String Name="Units">kJ/mol</String>
57 <String Name="Name">Temperature</String>
58 <String Name="Units">K</String>
61 <String Name="Name">Pres. DC</String>
62 <String Name="Units">bar</String>
65 <String Name="Name">Pressure</String>
66 <String Name="Units">bar</String>
69 <String Name="Name">dVremain/dl</String>
70 <String Name="Units">kJ/mol</String>
73 <String Name="Name">dEkin/dl</String>
74 <String Name="Units">kJ/mol</String>
77 <String Name="Name">dVcoul/dl</String>
78 <String Name="Units">kJ/mol</String>
81 <String Name="Name">dVvdw/dl</String>
82 <String Name="Units">kJ/mol</String>
85 <String Name="Name">dVbonded/dl</String>
86 <String Name="Units">kJ/mol</String>
89 <String Name="Name">dVrestraint/dl</String>
90 <String Name="Units">kJ/mol</String>
93 <String Name="Name">Constr. rmsd</String>
94 <String Name="Units"></String>
97 <String Name="Name">Box-X</String>
98 <String Name="Units">nm</String>
101 <String Name="Name">Box-Y</String>
102 <String Name="Units">nm</String>
105 <String Name="Name">Box-Z</String>
106 <String Name="Units">nm</String>
109 <String Name="Name">Volume</String>
110 <String Name="Units">nm^3</String>
113 <String Name="Name">Density</String>
114 <String Name="Units">kg/m^3</String>
117 <String Name="Name">pV</String>
118 <String Name="Units">kJ/mol</String>
121 <String Name="Name">Enthalpy</String>
122 <String Name="Units">kJ/mol</String>
125 <String Name="Name">Vir-XX</String>
126 <String Name="Units">kJ/mol</String>
129 <String Name="Name">Vir-XY</String>
130 <String Name="Units">kJ/mol</String>
133 <String Name="Name">Vir-XZ</String>
134 <String Name="Units">kJ/mol</String>
137 <String Name="Name">Vir-YX</String>
138 <String Name="Units">kJ/mol</String>
141 <String Name="Name">Vir-YY</String>
142 <String Name="Units">kJ/mol</String>
145 <String Name="Name">Vir-YZ</String>
146 <String Name="Units">kJ/mol</String>
149 <String Name="Name">Vir-ZX</String>
150 <String Name="Units">kJ/mol</String>
153 <String Name="Name">Vir-ZY</String>
154 <String Name="Units">kJ/mol</String>
157 <String Name="Name">Vir-ZZ</String>
158 <String Name="Units">kJ/mol</String>
161 <String Name="Name">Pres-XX</String>
162 <String Name="Units">bar</String>
165 <String Name="Name">Pres-XY</String>
166 <String Name="Units">bar</String>
169 <String Name="Name">Pres-XZ</String>
170 <String Name="Units">bar</String>
173 <String Name="Name">Pres-YX</String>
174 <String Name="Units">bar</String>
177 <String Name="Name">Pres-YY</String>
178 <String Name="Units">bar</String>
181 <String Name="Name">Pres-YZ</String>
182 <String Name="Units">bar</String>
185 <String Name="Name">Pres-ZX</String>
186 <String Name="Units">bar</String>
189 <String Name="Name">Pres-ZY</String>
190 <String Name="Units">bar</String>
193 <String Name="Name">Pres-ZZ</String>
194 <String Name="Units">bar</String>
197 <String Name="Name">#Surf*SurfTen</String>
198 <String Name="Units">bar nm</String>
201 <String Name="Name">Box-Vel-XX</String>
202 <String Name="Units">nm/ps</String>
205 <String Name="Name">Box-Vel-YY</String>
206 <String Name="Units">nm/ps</String>
209 <String Name="Name">Box-Vel-ZZ</String>
210 <String Name="Units">nm/ps</String>
213 <String Name="Name">Mu-X</String>
214 <String Name="Units">D</String>
217 <String Name="Name">Mu-Y</String>
218 <String Name="Units">D</String>
221 <String Name="Name">Mu-Z</String>
222 <String Name="Units">D</String>
225 <String Name="Name">2CosZ*Vel-X</String>
226 <String Name="Units">nm/ps</String>
229 <String Name="Name">1/Viscosity</String>
230 <String Name="Units">m s/kg</String>
233 <String Name="Name">Coul-SR:Protein-Protein</String>
234 <String Name="Units">kJ/mol</String>
237 <String Name="Name">LJ-SR:Protein-Protein</String>
238 <String Name="Units">kJ/mol</String>
241 <String Name="Name">Coul-14:Protein-Protein</String>
242 <String Name="Units">kJ/mol</String>
245 <String Name="Name">LJ-14:Protein-Protein</String>
246 <String Name="Units">kJ/mol</String>
249 <String Name="Name">Coul-SR:Protein-Water</String>
250 <String Name="Units">kJ/mol</String>
253 <String Name="Name">LJ-SR:Protein-Water</String>
254 <String Name="Units">kJ/mol</String>
257 <String Name="Name">Coul-14:Protein-Water</String>
258 <String Name="Units">kJ/mol</String>
261 <String Name="Name">LJ-14:Protein-Water</String>
262 <String Name="Units">kJ/mol</String>
265 <String Name="Name">Coul-SR:Protein-Lipid</String>
266 <String Name="Units">kJ/mol</String>
269 <String Name="Name">LJ-SR:Protein-Lipid</String>
270 <String Name="Units">kJ/mol</String>
273 <String Name="Name">Coul-14:Protein-Lipid</String>
274 <String Name="Units">kJ/mol</String>
277 <String Name="Name">LJ-14:Protein-Lipid</String>
278 <String Name="Units">kJ/mol</String>
281 <String Name="Name">Coul-SR:Water-Water</String>
282 <String Name="Units">kJ/mol</String>
285 <String Name="Name">LJ-SR:Water-Water</String>
286 <String Name="Units">kJ/mol</String>
289 <String Name="Name">Coul-14:Water-Water</String>
290 <String Name="Units">kJ/mol</String>
293 <String Name="Name">LJ-14:Water-Water</String>
294 <String Name="Units">kJ/mol</String>
297 <String Name="Name">Coul-SR:Water-Lipid</String>
298 <String Name="Units">kJ/mol</String>
301 <String Name="Name">LJ-SR:Water-Lipid</String>
302 <String Name="Units">kJ/mol</String>
305 <String Name="Name">Coul-14:Water-Lipid</String>
306 <String Name="Units">kJ/mol</String>
309 <String Name="Name">LJ-14:Water-Lipid</String>
310 <String Name="Units">kJ/mol</String>
313 <String Name="Name">Coul-SR:Lipid-Lipid</String>
314 <String Name="Units">kJ/mol</String>
317 <String Name="Name">LJ-SR:Lipid-Lipid</String>
318 <String Name="Units">kJ/mol</String>
321 <String Name="Name">Coul-14:Lipid-Lipid</String>
322 <String Name="Units">kJ/mol</String>
325 <String Name="Name">LJ-14:Lipid-Lipid</String>
326 <String Name="Units">kJ/mol</String>
329 <String Name="Name">T-Protein</String>
330 <String Name="Units">K</String>
333 <String Name="Name">T-Water</String>
334 <String Name="Units">K</String>
337 <String Name="Name">T-Lipid</String>
338 <String Name="Units">K</String>
341 <Sequence Name="Frames">
342 <Int Name="Length">1</Int>
344 <Real Name="Time">10.1</Real>
345 <Real Name="Timestep">0.001</Real>
346 <String Name="Step">0</String>
347 <String Name="NumSteps">0</String>
348 <Sequence Name="EnergyTerms">
349 <Int Name="Length">83</Int>
351 <String Name="Name">LJ-14</String>
352 <Real Name="Value">11.499999999999995</Real>
355 <String Name="Name">Coulomb-14</String>
356 <Real Name="Value">11.599999999999994</Real>
359 <String Name="Name">LJ (SR)</String>
360 <Real Name="Value">10.299999999999999</Real>
363 <String Name="Name">Disper. corr.</String>
364 <Real Name="Value">12.499999999999991</Real>
367 <String Name="Name">Coulomb (SR)</String>
368 <Real Name="Value">10.399999999999999</Real>
371 <String Name="Name">Coul. recip.</String>
372 <Real Name="Value">11.299999999999995</Real>
375 <String Name="Name">LJ recip.</String>
376 <Real Name="Value">11.399999999999995</Real>
379 <String Name="Name">COM Pull En.</String>
380 <Real Name="Value">12.89999999999999</Real>
383 <String Name="Name">Potential</String>
384 <Real Name="Value">10.499999999999998</Real>
387 <String Name="Name">Kinetic En.</String>
388 <Real Name="Value">10.599999999999998</Real>
391 <String Name="Name">Total Energy</String>
392 <Real Name="Value">10.699999999999998</Real>
395 <String Name="Name">Conserved En.</String>
396 <Real Name="Value">12.999999999999989</Real>
399 <String Name="Name">Temperature</String>
400 <Real Name="Value">10.799999999999997</Real>
403 <String Name="Name">Pres. DC</String>
404 <Real Name="Value">12.599999999999991</Real>
407 <String Name="Name">Pressure</String>
408 <Real Name="Value">10.899999999999997</Real>
411 <String Name="Name">dVremain/dl</String>
412 <Real Name="Value">12.399999999999991</Real>
415 <String Name="Name">dEkin/dl</String>
416 <Real Name="Value">12.299999999999992</Real>
419 <String Name="Name">dVcoul/dl</String>
420 <Real Name="Value">11.899999999999993</Real>
423 <String Name="Name">dVvdw/dl</String>
424 <Real Name="Value">11.999999999999993</Real>
427 <String Name="Name">dVbonded/dl</String>
428 <Real Name="Value">12.099999999999993</Real>
431 <String Name="Name">dVrestraint/dl</String>
432 <Real Name="Value">12.199999999999992</Real>
435 <String Name="Name">Constr. rmsd</String>
436 <Real Name="Value">0</Real>
439 <String Name="Name">Box-X</String>
440 <Real Name="Value">19.900000000000034</Real>
443 <String Name="Name">Box-Y</String>
444 <Real Name="Value">20.30000000000004</Real>
447 <String Name="Name">Box-Z</String>
448 <Real Name="Value">20.700000000000045</Real>
451 <String Name="Name">Volume</String>
452 <Real Name="Value">8362.1790000000492</Real>
455 <String Name="Name">Density</String>
456 <Real Name="Value">0.0020254884515387549</Real>
459 <String Name="Name">pV</String>
460 <Real Name="Value">0</Real>
463 <String Name="Name">Enthalpy</String>
464 <Real Name="Value">10.699999999999998</Real>
467 <String Name="Name">Vir-XX</String>
468 <Real Name="Value">22.600000000000072</Real>
471 <String Name="Name">Vir-XY</String>
472 <Real Name="Value">22.700000000000074</Real>
475 <String Name="Name">Vir-XZ</String>
476 <Real Name="Value">22.800000000000075</Real>
479 <String Name="Name">Vir-YX</String>
480 <Real Name="Value">22.900000000000077</Real>
483 <String Name="Name">Vir-YY</String>
484 <Real Name="Value">23.000000000000078</Real>
487 <String Name="Name">Vir-YZ</String>
488 <Real Name="Value">23.10000000000008</Real>
491 <String Name="Name">Vir-ZX</String>
492 <Real Name="Value">23.200000000000081</Real>
495 <String Name="Name">Vir-ZY</String>
496 <Real Name="Value">23.300000000000082</Real>
499 <String Name="Name">Vir-ZZ</String>
500 <Real Name="Value">23.400000000000084</Real>
503 <String Name="Name">Pres-XX</String>
504 <Real Name="Value">23.500000000000085</Real>
507 <String Name="Name">Pres-XY</String>
508 <Real Name="Value">23.600000000000087</Real>
511 <String Name="Name">Pres-XZ</String>
512 <Real Name="Value">23.700000000000088</Real>
515 <String Name="Name">Pres-YX</String>
516 <Real Name="Value">23.80000000000009</Real>
519 <String Name="Name">Pres-YY</String>
520 <Real Name="Value">23.900000000000091</Real>
523 <String Name="Name">Pres-YZ</String>
524 <Real Name="Value">24.000000000000092</Real>
527 <String Name="Name">Pres-ZX</String>
528 <Real Name="Value">24.100000000000094</Real>
531 <String Name="Name">Pres-ZY</String>
532 <Real Name="Value">24.200000000000095</Real>
535 <String Name="Name">Pres-ZZ</String>
536 <Real Name="Value">24.300000000000097</Real>
539 <String Name="Name">#Surf*SurfTen</String>
540 <Real Name="Value">12.420000000000204</Real>
543 <String Name="Name">Box-Vel-XX</String>
544 <Real Name="Value">24.700000000000102</Real>
547 <String Name="Name">Box-Vel-YY</String>
548 <Real Name="Value">25.100000000000108</Real>
551 <String Name="Name">Box-Vel-ZZ</String>
552 <Real Name="Value">25.500000000000114</Real>
555 <String Name="Name">Mu-X</String>
556 <Real Name="Value">24.400000000000098</Real>
559 <String Name="Name">Mu-Y</String>
560 <Real Name="Value">24.500000000000099</Real>
563 <String Name="Name">Mu-Z</String>
564 <Real Name="Value">24.600000000000101</Real>
567 <String Name="Name">2CosZ*Vel-X</String>
568 <Real Name="Value">18.90000000000002</Real>
571 <String Name="Name">1/Viscosity</String>
572 <Real Name="Value">45729160.574543945</Real>
575 <String Name="Name">Coul-SR:Protein-Protein</String>
576 <Real Name="Value">13.099999999999989</Real>
579 <String Name="Name">LJ-SR:Protein-Protein</String>
580 <Real Name="Value">13.199999999999989</Real>
583 <String Name="Name">Coul-14:Protein-Protein</String>
584 <Real Name="Value">13.399999999999988</Real>
587 <String Name="Name">LJ-14:Protein-Protein</String>
588 <Real Name="Value">13.499999999999988</Real>
591 <String Name="Name">Coul-SR:Protein-Water</String>
592 <Real Name="Value">13.599999999999987</Real>
595 <String Name="Name">LJ-SR:Protein-Water</String>
596 <Real Name="Value">13.699999999999987</Real>
599 <String Name="Name">Coul-14:Protein-Water</String>
600 <Real Name="Value">13.899999999999986</Real>
603 <String Name="Name">LJ-14:Protein-Water</String>
604 <Real Name="Value">13.999999999999986</Real>
607 <String Name="Name">Coul-SR:Protein-Lipid</String>
608 <Real Name="Value">14.099999999999985</Real>
611 <String Name="Name">LJ-SR:Protein-Lipid</String>
612 <Real Name="Value">14.199999999999985</Real>
615 <String Name="Name">Coul-14:Protein-Lipid</String>
616 <Real Name="Value">14.399999999999984</Real>
619 <String Name="Name">LJ-14:Protein-Lipid</String>
620 <Real Name="Value">14.499999999999984</Real>
623 <String Name="Name">Coul-SR:Water-Water</String>
624 <Real Name="Value">15.099999999999982</Real>
627 <String Name="Name">LJ-SR:Water-Water</String>
628 <Real Name="Value">15.199999999999982</Real>
631 <String Name="Name">Coul-14:Water-Water</String>
632 <Real Name="Value">15.399999999999981</Real>
635 <String Name="Name">LJ-14:Water-Water</String>
636 <Real Name="Value">15.49999999999998</Real>
639 <String Name="Name">Coul-SR:Water-Lipid</String>
640 <Real Name="Value">15.59999999999998</Real>
643 <String Name="Name">LJ-SR:Water-Lipid</String>
644 <Real Name="Value">15.69999999999998</Real>
647 <String Name="Name">Coul-14:Water-Lipid</String>
648 <Real Name="Value">15.899999999999979</Real>
651 <String Name="Name">LJ-14:Water-Lipid</String>
652 <Real Name="Value">15.999999999999979</Real>
655 <String Name="Name">Coul-SR:Lipid-Lipid</String>
656 <Real Name="Value">17.099999999999994</Real>
659 <String Name="Name">LJ-SR:Lipid-Lipid</String>
660 <Real Name="Value">17.199999999999996</Real>
663 <String Name="Name">Coul-14:Lipid-Lipid</String>
664 <Real Name="Value">17.399999999999999</Real>
667 <String Name="Name">LJ-14:Lipid-Lipid</String>
668 <Real Name="Value">17.5</Real>
671 <String Name="Name">T-Protein</String>
672 <Real Name="Value">17.600000000000001</Real>
675 <String Name="Name">T-Water</String>
676 <Real Name="Value">17.800000000000004</Real>
679 <String Name="Name">T-Lipid</String>
680 <Real Name="Value">18.000000000000007</Real>
686 <Int Name="Number of Energy Terms">83</Int>
687 <String Name="log">Current ref_t for group Water: 25.7
688 Current ref_t for group Lipid: 25.8
691 LJ-14 Coulomb-14 LJ (SR) Disper. corr. Coulomb (SR)
692 1.15000e+01 1.16000e+01 1.03000e+01 1.25000e+01 1.04000e+01
693 Coul. recip. LJ recip. COM Pull En. Potential Kinetic En.
694 1.13000e+01 1.14000e+01 1.29000e+01 1.05000e+01 1.06000e+01
695 Total Energy Conserved En. Temperature Pres. DC (bar) Pressure (bar)
696 1.07000e+01 1.30000e+01 1.08000e+01 1.26000e+01 1.09000e+01
697 dVremain/dl dEkin/dl dVcoul/dl dVvdw/dl dVbonded/dl
698 1.24000e+01 1.23000e+01 1.19000e+01 1.20000e+01 1.21000e+01
699 dVrestraint/dl Constr. rmsd
700 1.22000e+01 0.00000e+00
702 Current ref_t for group Water: 25.7
703 Current ref_t for group Lipid: 25.8
705 <====== ############### ==>
706 <==== A V E R A G E S ====>
707 <== ############### ======>
709 Statistics over 1 steps using 1 frames
712 LJ-14 Coulomb-14 LJ (SR) Disper. corr. Coulomb (SR)
713 1.15000e+01 1.16000e+01 1.03000e+01 1.25000e+01 1.04000e+01
714 Coul. recip. LJ recip. COM Pull En. Potential Kinetic En.
715 1.13000e+01 1.14000e+01 1.29000e+01 1.05000e+01 1.06000e+01
716 Total Energy Conserved En. Temperature Pres. DC (bar) Pressure (bar)
717 1.07000e+01 1.30000e+01 1.08000e+01 1.26000e+01 1.09000e+01
718 dVremain/dl dEkin/dl dVcoul/dl dVvdw/dl dVbonded/dl
719 1.24000e+01 1.23000e+01 1.19000e+01 1.20000e+01 1.21000e+01
720 dVrestraint/dl Constr. rmsd
721 1.22000e+01 0.00000e+00
724 1.99000e+01 2.03000e+01 2.07000e+01
726 Total Virial (kJ/mol)
727 2.26000e+01 2.27000e+01 2.28000e+01
728 2.29000e+01 2.30000e+01 2.31000e+01
729 2.32000e+01 2.33000e+01 2.34000e+01
732 2.35000e+01 2.36000e+01 2.37000e+01
733 2.38000e+01 2.39000e+01 2.40000e+01
734 2.41000e+01 2.42000e+01 2.43000e+01
737 2.44000e+01 2.45000e+01 2.46000e+01
739 Epot (kJ/mol) Coul-SR LJ-SR Coul-14 LJ-14
740 Protein-Protein 1.31000e+01 1.32000e+01 1.34000e+01 1.35000e+01
741 Protein-Water 1.36000e+01 1.37000e+01 1.39000e+01 1.40000e+01
742 Protein-Lipid 1.41000e+01 1.42000e+01 1.44000e+01 1.45000e+01
743 Water-Water 1.51000e+01 1.52000e+01 1.54000e+01 1.55000e+01
744 Water-Lipid 1.56000e+01 1.57000e+01 1.59000e+01 1.60000e+01
745 Lipid-Lipid 1.71000e+01 1.72000e+01 1.74000e+01 1.75000e+01
747 T-Protein T-Water T-Lipid
748 1.76000e+01 1.78000e+01 1.80000e+01