2 * Note: this file was generated by the Gromacs sse4_1_single kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse4_1_single.h"
34 #include "kernelutil_x86_sse4_1_single.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW4P1_VF_sse4_1_single
38 * Electrostatics interaction: Ewald
39 * VdW interaction: LennardJones
40 * Geometry: Water4-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecEw_VdwLJ_GeomW4P1_VF_sse4_1_single
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
60 int jnrA,jnrB,jnrC,jnrD;
61 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
62 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
63 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
65 real *shiftvec,*fshift,*x,*f;
66 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
68 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
70 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
72 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
74 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
76 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
77 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
78 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
79 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
80 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
81 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
82 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
83 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
86 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
89 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
90 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
92 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
94 __m128 dummy_mask,cutoff_mask;
95 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
96 __m128 one = _mm_set1_ps(1.0);
97 __m128 two = _mm_set1_ps(2.0);
103 jindex = nlist->jindex;
105 shiftidx = nlist->shift;
107 shiftvec = fr->shift_vec[0];
108 fshift = fr->fshift[0];
109 facel = _mm_set1_ps(fr->epsfac);
110 charge = mdatoms->chargeA;
111 nvdwtype = fr->ntype;
113 vdwtype = mdatoms->typeA;
115 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
116 ewtab = fr->ic->tabq_coul_FDV0;
117 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
118 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
120 /* Setup water-specific parameters */
121 inr = nlist->iinr[0];
122 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
123 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
124 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
125 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
127 /* Avoid stupid compiler warnings */
128 jnrA = jnrB = jnrC = jnrD = 0;
137 for(iidx=0;iidx<4*DIM;iidx++)
142 /* Start outer loop over neighborlists */
143 for(iidx=0; iidx<nri; iidx++)
145 /* Load shift vector for this list */
146 i_shift_offset = DIM*shiftidx[iidx];
148 /* Load limits for loop over neighbors */
149 j_index_start = jindex[iidx];
150 j_index_end = jindex[iidx+1];
152 /* Get outer coordinate index */
154 i_coord_offset = DIM*inr;
156 /* Load i particle coords and add shift vector */
157 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
158 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
160 fix0 = _mm_setzero_ps();
161 fiy0 = _mm_setzero_ps();
162 fiz0 = _mm_setzero_ps();
163 fix1 = _mm_setzero_ps();
164 fiy1 = _mm_setzero_ps();
165 fiz1 = _mm_setzero_ps();
166 fix2 = _mm_setzero_ps();
167 fiy2 = _mm_setzero_ps();
168 fiz2 = _mm_setzero_ps();
169 fix3 = _mm_setzero_ps();
170 fiy3 = _mm_setzero_ps();
171 fiz3 = _mm_setzero_ps();
173 /* Reset potential sums */
174 velecsum = _mm_setzero_ps();
175 vvdwsum = _mm_setzero_ps();
177 /* Start inner kernel loop */
178 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
181 /* Get j neighbor index, and coordinate index */
186 j_coord_offsetA = DIM*jnrA;
187 j_coord_offsetB = DIM*jnrB;
188 j_coord_offsetC = DIM*jnrC;
189 j_coord_offsetD = DIM*jnrD;
191 /* load j atom coordinates */
192 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
193 x+j_coord_offsetC,x+j_coord_offsetD,
196 /* Calculate displacement vector */
197 dx00 = _mm_sub_ps(ix0,jx0);
198 dy00 = _mm_sub_ps(iy0,jy0);
199 dz00 = _mm_sub_ps(iz0,jz0);
200 dx10 = _mm_sub_ps(ix1,jx0);
201 dy10 = _mm_sub_ps(iy1,jy0);
202 dz10 = _mm_sub_ps(iz1,jz0);
203 dx20 = _mm_sub_ps(ix2,jx0);
204 dy20 = _mm_sub_ps(iy2,jy0);
205 dz20 = _mm_sub_ps(iz2,jz0);
206 dx30 = _mm_sub_ps(ix3,jx0);
207 dy30 = _mm_sub_ps(iy3,jy0);
208 dz30 = _mm_sub_ps(iz3,jz0);
210 /* Calculate squared distance and things based on it */
211 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
212 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
213 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
214 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
216 rinv10 = gmx_mm_invsqrt_ps(rsq10);
217 rinv20 = gmx_mm_invsqrt_ps(rsq20);
218 rinv30 = gmx_mm_invsqrt_ps(rsq30);
220 rinvsq00 = gmx_mm_inv_ps(rsq00);
221 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
222 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
223 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
225 /* Load parameters for j particles */
226 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
227 charge+jnrC+0,charge+jnrD+0);
228 vdwjidx0A = 2*vdwtype[jnrA+0];
229 vdwjidx0B = 2*vdwtype[jnrB+0];
230 vdwjidx0C = 2*vdwtype[jnrC+0];
231 vdwjidx0D = 2*vdwtype[jnrD+0];
233 /**************************
234 * CALCULATE INTERACTIONS *
235 **************************/
237 /* Compute parameters for interactions between i and j atoms */
238 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
239 vdwparam+vdwioffset0+vdwjidx0B,
240 vdwparam+vdwioffset0+vdwjidx0C,
241 vdwparam+vdwioffset0+vdwjidx0D,
244 /* LENNARD-JONES DISPERSION/REPULSION */
246 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
247 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
248 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
249 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
250 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
252 /* Update potential sum for this i atom from the interaction with this j atom. */
253 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
257 /* Calculate temporary vectorial force */
258 tx = _mm_mul_ps(fscal,dx00);
259 ty = _mm_mul_ps(fscal,dy00);
260 tz = _mm_mul_ps(fscal,dz00);
262 /* Update vectorial force */
263 fix0 = _mm_add_ps(fix0,tx);
264 fiy0 = _mm_add_ps(fiy0,ty);
265 fiz0 = _mm_add_ps(fiz0,tz);
267 fjptrA = f+j_coord_offsetA;
268 fjptrB = f+j_coord_offsetB;
269 fjptrC = f+j_coord_offsetC;
270 fjptrD = f+j_coord_offsetD;
271 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
273 /**************************
274 * CALCULATE INTERACTIONS *
275 **************************/
277 r10 = _mm_mul_ps(rsq10,rinv10);
279 /* Compute parameters for interactions between i and j atoms */
280 qq10 = _mm_mul_ps(iq1,jq0);
282 /* EWALD ELECTROSTATICS */
284 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
285 ewrt = _mm_mul_ps(r10,ewtabscale);
286 ewitab = _mm_cvttps_epi32(ewrt);
287 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
288 ewitab = _mm_slli_epi32(ewitab,2);
289 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
290 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
291 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
292 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
293 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
294 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
295 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
296 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
297 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
299 /* Update potential sum for this i atom from the interaction with this j atom. */
300 velecsum = _mm_add_ps(velecsum,velec);
304 /* Calculate temporary vectorial force */
305 tx = _mm_mul_ps(fscal,dx10);
306 ty = _mm_mul_ps(fscal,dy10);
307 tz = _mm_mul_ps(fscal,dz10);
309 /* Update vectorial force */
310 fix1 = _mm_add_ps(fix1,tx);
311 fiy1 = _mm_add_ps(fiy1,ty);
312 fiz1 = _mm_add_ps(fiz1,tz);
314 fjptrA = f+j_coord_offsetA;
315 fjptrB = f+j_coord_offsetB;
316 fjptrC = f+j_coord_offsetC;
317 fjptrD = f+j_coord_offsetD;
318 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
320 /**************************
321 * CALCULATE INTERACTIONS *
322 **************************/
324 r20 = _mm_mul_ps(rsq20,rinv20);
326 /* Compute parameters for interactions between i and j atoms */
327 qq20 = _mm_mul_ps(iq2,jq0);
329 /* EWALD ELECTROSTATICS */
331 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
332 ewrt = _mm_mul_ps(r20,ewtabscale);
333 ewitab = _mm_cvttps_epi32(ewrt);
334 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
335 ewitab = _mm_slli_epi32(ewitab,2);
336 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
337 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
338 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
339 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
340 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
341 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
342 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
343 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
344 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
346 /* Update potential sum for this i atom from the interaction with this j atom. */
347 velecsum = _mm_add_ps(velecsum,velec);
351 /* Calculate temporary vectorial force */
352 tx = _mm_mul_ps(fscal,dx20);
353 ty = _mm_mul_ps(fscal,dy20);
354 tz = _mm_mul_ps(fscal,dz20);
356 /* Update vectorial force */
357 fix2 = _mm_add_ps(fix2,tx);
358 fiy2 = _mm_add_ps(fiy2,ty);
359 fiz2 = _mm_add_ps(fiz2,tz);
361 fjptrA = f+j_coord_offsetA;
362 fjptrB = f+j_coord_offsetB;
363 fjptrC = f+j_coord_offsetC;
364 fjptrD = f+j_coord_offsetD;
365 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
367 /**************************
368 * CALCULATE INTERACTIONS *
369 **************************/
371 r30 = _mm_mul_ps(rsq30,rinv30);
373 /* Compute parameters for interactions between i and j atoms */
374 qq30 = _mm_mul_ps(iq3,jq0);
376 /* EWALD ELECTROSTATICS */
378 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
379 ewrt = _mm_mul_ps(r30,ewtabscale);
380 ewitab = _mm_cvttps_epi32(ewrt);
381 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
382 ewitab = _mm_slli_epi32(ewitab,2);
383 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
384 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
385 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
386 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
387 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
388 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
389 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
390 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
391 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
393 /* Update potential sum for this i atom from the interaction with this j atom. */
394 velecsum = _mm_add_ps(velecsum,velec);
398 /* Calculate temporary vectorial force */
399 tx = _mm_mul_ps(fscal,dx30);
400 ty = _mm_mul_ps(fscal,dy30);
401 tz = _mm_mul_ps(fscal,dz30);
403 /* Update vectorial force */
404 fix3 = _mm_add_ps(fix3,tx);
405 fiy3 = _mm_add_ps(fiy3,ty);
406 fiz3 = _mm_add_ps(fiz3,tz);
408 fjptrA = f+j_coord_offsetA;
409 fjptrB = f+j_coord_offsetB;
410 fjptrC = f+j_coord_offsetC;
411 fjptrD = f+j_coord_offsetD;
412 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
414 /* Inner loop uses 155 flops */
420 /* Get j neighbor index, and coordinate index */
421 jnrlistA = jjnr[jidx];
422 jnrlistB = jjnr[jidx+1];
423 jnrlistC = jjnr[jidx+2];
424 jnrlistD = jjnr[jidx+3];
425 /* Sign of each element will be negative for non-real atoms.
426 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
427 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
429 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
430 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
431 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
432 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
433 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
434 j_coord_offsetA = DIM*jnrA;
435 j_coord_offsetB = DIM*jnrB;
436 j_coord_offsetC = DIM*jnrC;
437 j_coord_offsetD = DIM*jnrD;
439 /* load j atom coordinates */
440 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
441 x+j_coord_offsetC,x+j_coord_offsetD,
444 /* Calculate displacement vector */
445 dx00 = _mm_sub_ps(ix0,jx0);
446 dy00 = _mm_sub_ps(iy0,jy0);
447 dz00 = _mm_sub_ps(iz0,jz0);
448 dx10 = _mm_sub_ps(ix1,jx0);
449 dy10 = _mm_sub_ps(iy1,jy0);
450 dz10 = _mm_sub_ps(iz1,jz0);
451 dx20 = _mm_sub_ps(ix2,jx0);
452 dy20 = _mm_sub_ps(iy2,jy0);
453 dz20 = _mm_sub_ps(iz2,jz0);
454 dx30 = _mm_sub_ps(ix3,jx0);
455 dy30 = _mm_sub_ps(iy3,jy0);
456 dz30 = _mm_sub_ps(iz3,jz0);
458 /* Calculate squared distance and things based on it */
459 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
460 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
461 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
462 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
464 rinv10 = gmx_mm_invsqrt_ps(rsq10);
465 rinv20 = gmx_mm_invsqrt_ps(rsq20);
466 rinv30 = gmx_mm_invsqrt_ps(rsq30);
468 rinvsq00 = gmx_mm_inv_ps(rsq00);
469 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
470 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
471 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
473 /* Load parameters for j particles */
474 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
475 charge+jnrC+0,charge+jnrD+0);
476 vdwjidx0A = 2*vdwtype[jnrA+0];
477 vdwjidx0B = 2*vdwtype[jnrB+0];
478 vdwjidx0C = 2*vdwtype[jnrC+0];
479 vdwjidx0D = 2*vdwtype[jnrD+0];
481 /**************************
482 * CALCULATE INTERACTIONS *
483 **************************/
485 /* Compute parameters for interactions between i and j atoms */
486 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
487 vdwparam+vdwioffset0+vdwjidx0B,
488 vdwparam+vdwioffset0+vdwjidx0C,
489 vdwparam+vdwioffset0+vdwjidx0D,
492 /* LENNARD-JONES DISPERSION/REPULSION */
494 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
495 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
496 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
497 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
498 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
500 /* Update potential sum for this i atom from the interaction with this j atom. */
501 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
502 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
506 fscal = _mm_andnot_ps(dummy_mask,fscal);
508 /* Calculate temporary vectorial force */
509 tx = _mm_mul_ps(fscal,dx00);
510 ty = _mm_mul_ps(fscal,dy00);
511 tz = _mm_mul_ps(fscal,dz00);
513 /* Update vectorial force */
514 fix0 = _mm_add_ps(fix0,tx);
515 fiy0 = _mm_add_ps(fiy0,ty);
516 fiz0 = _mm_add_ps(fiz0,tz);
518 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
519 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
520 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
521 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
522 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
524 /**************************
525 * CALCULATE INTERACTIONS *
526 **************************/
528 r10 = _mm_mul_ps(rsq10,rinv10);
529 r10 = _mm_andnot_ps(dummy_mask,r10);
531 /* Compute parameters for interactions between i and j atoms */
532 qq10 = _mm_mul_ps(iq1,jq0);
534 /* EWALD ELECTROSTATICS */
536 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
537 ewrt = _mm_mul_ps(r10,ewtabscale);
538 ewitab = _mm_cvttps_epi32(ewrt);
539 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
540 ewitab = _mm_slli_epi32(ewitab,2);
541 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
542 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
543 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
544 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
545 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
546 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
547 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
548 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
549 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
551 /* Update potential sum for this i atom from the interaction with this j atom. */
552 velec = _mm_andnot_ps(dummy_mask,velec);
553 velecsum = _mm_add_ps(velecsum,velec);
557 fscal = _mm_andnot_ps(dummy_mask,fscal);
559 /* Calculate temporary vectorial force */
560 tx = _mm_mul_ps(fscal,dx10);
561 ty = _mm_mul_ps(fscal,dy10);
562 tz = _mm_mul_ps(fscal,dz10);
564 /* Update vectorial force */
565 fix1 = _mm_add_ps(fix1,tx);
566 fiy1 = _mm_add_ps(fiy1,ty);
567 fiz1 = _mm_add_ps(fiz1,tz);
569 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
570 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
571 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
572 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
573 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
575 /**************************
576 * CALCULATE INTERACTIONS *
577 **************************/
579 r20 = _mm_mul_ps(rsq20,rinv20);
580 r20 = _mm_andnot_ps(dummy_mask,r20);
582 /* Compute parameters for interactions between i and j atoms */
583 qq20 = _mm_mul_ps(iq2,jq0);
585 /* EWALD ELECTROSTATICS */
587 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
588 ewrt = _mm_mul_ps(r20,ewtabscale);
589 ewitab = _mm_cvttps_epi32(ewrt);
590 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
591 ewitab = _mm_slli_epi32(ewitab,2);
592 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
593 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
594 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
595 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
596 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
597 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
598 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
599 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
600 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
602 /* Update potential sum for this i atom from the interaction with this j atom. */
603 velec = _mm_andnot_ps(dummy_mask,velec);
604 velecsum = _mm_add_ps(velecsum,velec);
608 fscal = _mm_andnot_ps(dummy_mask,fscal);
610 /* Calculate temporary vectorial force */
611 tx = _mm_mul_ps(fscal,dx20);
612 ty = _mm_mul_ps(fscal,dy20);
613 tz = _mm_mul_ps(fscal,dz20);
615 /* Update vectorial force */
616 fix2 = _mm_add_ps(fix2,tx);
617 fiy2 = _mm_add_ps(fiy2,ty);
618 fiz2 = _mm_add_ps(fiz2,tz);
620 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
621 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
622 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
623 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
624 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
626 /**************************
627 * CALCULATE INTERACTIONS *
628 **************************/
630 r30 = _mm_mul_ps(rsq30,rinv30);
631 r30 = _mm_andnot_ps(dummy_mask,r30);
633 /* Compute parameters for interactions between i and j atoms */
634 qq30 = _mm_mul_ps(iq3,jq0);
636 /* EWALD ELECTROSTATICS */
638 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
639 ewrt = _mm_mul_ps(r30,ewtabscale);
640 ewitab = _mm_cvttps_epi32(ewrt);
641 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
642 ewitab = _mm_slli_epi32(ewitab,2);
643 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
644 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
645 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
646 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
647 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
648 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
649 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
650 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
651 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
653 /* Update potential sum for this i atom from the interaction with this j atom. */
654 velec = _mm_andnot_ps(dummy_mask,velec);
655 velecsum = _mm_add_ps(velecsum,velec);
659 fscal = _mm_andnot_ps(dummy_mask,fscal);
661 /* Calculate temporary vectorial force */
662 tx = _mm_mul_ps(fscal,dx30);
663 ty = _mm_mul_ps(fscal,dy30);
664 tz = _mm_mul_ps(fscal,dz30);
666 /* Update vectorial force */
667 fix3 = _mm_add_ps(fix3,tx);
668 fiy3 = _mm_add_ps(fiy3,ty);
669 fiz3 = _mm_add_ps(fiz3,tz);
671 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
672 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
673 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
674 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
675 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
677 /* Inner loop uses 158 flops */
680 /* End of innermost loop */
682 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
683 f+i_coord_offset,fshift+i_shift_offset);
686 /* Update potential energies */
687 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
688 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
690 /* Increment number of inner iterations */
691 inneriter += j_index_end - j_index_start;
693 /* Outer loop uses 26 flops */
696 /* Increment number of outer iterations */
699 /* Update outer/inner flops */
701 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*158);
704 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJ_GeomW4P1_F_sse4_1_single
705 * Electrostatics interaction: Ewald
706 * VdW interaction: LennardJones
707 * Geometry: Water4-Particle
708 * Calculate force/pot: Force
711 nb_kernel_ElecEw_VdwLJ_GeomW4P1_F_sse4_1_single
712 (t_nblist * gmx_restrict nlist,
713 rvec * gmx_restrict xx,
714 rvec * gmx_restrict ff,
715 t_forcerec * gmx_restrict fr,
716 t_mdatoms * gmx_restrict mdatoms,
717 nb_kernel_data_t * gmx_restrict kernel_data,
718 t_nrnb * gmx_restrict nrnb)
720 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
721 * just 0 for non-waters.
722 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
723 * jnr indices corresponding to data put in the four positions in the SIMD register.
725 int i_shift_offset,i_coord_offset,outeriter,inneriter;
726 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
727 int jnrA,jnrB,jnrC,jnrD;
728 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
729 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
730 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
732 real *shiftvec,*fshift,*x,*f;
733 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
735 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
737 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
739 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
741 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
743 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
744 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
745 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
746 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
747 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
748 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
749 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
750 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
753 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
756 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
757 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
759 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
761 __m128 dummy_mask,cutoff_mask;
762 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
763 __m128 one = _mm_set1_ps(1.0);
764 __m128 two = _mm_set1_ps(2.0);
770 jindex = nlist->jindex;
772 shiftidx = nlist->shift;
774 shiftvec = fr->shift_vec[0];
775 fshift = fr->fshift[0];
776 facel = _mm_set1_ps(fr->epsfac);
777 charge = mdatoms->chargeA;
778 nvdwtype = fr->ntype;
780 vdwtype = mdatoms->typeA;
782 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
783 ewtab = fr->ic->tabq_coul_F;
784 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
785 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
787 /* Setup water-specific parameters */
788 inr = nlist->iinr[0];
789 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
790 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
791 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
792 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
794 /* Avoid stupid compiler warnings */
795 jnrA = jnrB = jnrC = jnrD = 0;
804 for(iidx=0;iidx<4*DIM;iidx++)
809 /* Start outer loop over neighborlists */
810 for(iidx=0; iidx<nri; iidx++)
812 /* Load shift vector for this list */
813 i_shift_offset = DIM*shiftidx[iidx];
815 /* Load limits for loop over neighbors */
816 j_index_start = jindex[iidx];
817 j_index_end = jindex[iidx+1];
819 /* Get outer coordinate index */
821 i_coord_offset = DIM*inr;
823 /* Load i particle coords and add shift vector */
824 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
825 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
827 fix0 = _mm_setzero_ps();
828 fiy0 = _mm_setzero_ps();
829 fiz0 = _mm_setzero_ps();
830 fix1 = _mm_setzero_ps();
831 fiy1 = _mm_setzero_ps();
832 fiz1 = _mm_setzero_ps();
833 fix2 = _mm_setzero_ps();
834 fiy2 = _mm_setzero_ps();
835 fiz2 = _mm_setzero_ps();
836 fix3 = _mm_setzero_ps();
837 fiy3 = _mm_setzero_ps();
838 fiz3 = _mm_setzero_ps();
840 /* Start inner kernel loop */
841 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
844 /* Get j neighbor index, and coordinate index */
849 j_coord_offsetA = DIM*jnrA;
850 j_coord_offsetB = DIM*jnrB;
851 j_coord_offsetC = DIM*jnrC;
852 j_coord_offsetD = DIM*jnrD;
854 /* load j atom coordinates */
855 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
856 x+j_coord_offsetC,x+j_coord_offsetD,
859 /* Calculate displacement vector */
860 dx00 = _mm_sub_ps(ix0,jx0);
861 dy00 = _mm_sub_ps(iy0,jy0);
862 dz00 = _mm_sub_ps(iz0,jz0);
863 dx10 = _mm_sub_ps(ix1,jx0);
864 dy10 = _mm_sub_ps(iy1,jy0);
865 dz10 = _mm_sub_ps(iz1,jz0);
866 dx20 = _mm_sub_ps(ix2,jx0);
867 dy20 = _mm_sub_ps(iy2,jy0);
868 dz20 = _mm_sub_ps(iz2,jz0);
869 dx30 = _mm_sub_ps(ix3,jx0);
870 dy30 = _mm_sub_ps(iy3,jy0);
871 dz30 = _mm_sub_ps(iz3,jz0);
873 /* Calculate squared distance and things based on it */
874 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
875 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
876 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
877 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
879 rinv10 = gmx_mm_invsqrt_ps(rsq10);
880 rinv20 = gmx_mm_invsqrt_ps(rsq20);
881 rinv30 = gmx_mm_invsqrt_ps(rsq30);
883 rinvsq00 = gmx_mm_inv_ps(rsq00);
884 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
885 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
886 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
888 /* Load parameters for j particles */
889 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
890 charge+jnrC+0,charge+jnrD+0);
891 vdwjidx0A = 2*vdwtype[jnrA+0];
892 vdwjidx0B = 2*vdwtype[jnrB+0];
893 vdwjidx0C = 2*vdwtype[jnrC+0];
894 vdwjidx0D = 2*vdwtype[jnrD+0];
896 /**************************
897 * CALCULATE INTERACTIONS *
898 **************************/
900 /* Compute parameters for interactions between i and j atoms */
901 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
902 vdwparam+vdwioffset0+vdwjidx0B,
903 vdwparam+vdwioffset0+vdwjidx0C,
904 vdwparam+vdwioffset0+vdwjidx0D,
907 /* LENNARD-JONES DISPERSION/REPULSION */
909 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
910 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
914 /* Calculate temporary vectorial force */
915 tx = _mm_mul_ps(fscal,dx00);
916 ty = _mm_mul_ps(fscal,dy00);
917 tz = _mm_mul_ps(fscal,dz00);
919 /* Update vectorial force */
920 fix0 = _mm_add_ps(fix0,tx);
921 fiy0 = _mm_add_ps(fiy0,ty);
922 fiz0 = _mm_add_ps(fiz0,tz);
924 fjptrA = f+j_coord_offsetA;
925 fjptrB = f+j_coord_offsetB;
926 fjptrC = f+j_coord_offsetC;
927 fjptrD = f+j_coord_offsetD;
928 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
930 /**************************
931 * CALCULATE INTERACTIONS *
932 **************************/
934 r10 = _mm_mul_ps(rsq10,rinv10);
936 /* Compute parameters for interactions between i and j atoms */
937 qq10 = _mm_mul_ps(iq1,jq0);
939 /* EWALD ELECTROSTATICS */
941 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
942 ewrt = _mm_mul_ps(r10,ewtabscale);
943 ewitab = _mm_cvttps_epi32(ewrt);
944 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
945 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
946 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
948 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
949 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
953 /* Calculate temporary vectorial force */
954 tx = _mm_mul_ps(fscal,dx10);
955 ty = _mm_mul_ps(fscal,dy10);
956 tz = _mm_mul_ps(fscal,dz10);
958 /* Update vectorial force */
959 fix1 = _mm_add_ps(fix1,tx);
960 fiy1 = _mm_add_ps(fiy1,ty);
961 fiz1 = _mm_add_ps(fiz1,tz);
963 fjptrA = f+j_coord_offsetA;
964 fjptrB = f+j_coord_offsetB;
965 fjptrC = f+j_coord_offsetC;
966 fjptrD = f+j_coord_offsetD;
967 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
969 /**************************
970 * CALCULATE INTERACTIONS *
971 **************************/
973 r20 = _mm_mul_ps(rsq20,rinv20);
975 /* Compute parameters for interactions between i and j atoms */
976 qq20 = _mm_mul_ps(iq2,jq0);
978 /* EWALD ELECTROSTATICS */
980 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
981 ewrt = _mm_mul_ps(r20,ewtabscale);
982 ewitab = _mm_cvttps_epi32(ewrt);
983 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
984 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
985 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
987 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
988 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
992 /* Calculate temporary vectorial force */
993 tx = _mm_mul_ps(fscal,dx20);
994 ty = _mm_mul_ps(fscal,dy20);
995 tz = _mm_mul_ps(fscal,dz20);
997 /* Update vectorial force */
998 fix2 = _mm_add_ps(fix2,tx);
999 fiy2 = _mm_add_ps(fiy2,ty);
1000 fiz2 = _mm_add_ps(fiz2,tz);
1002 fjptrA = f+j_coord_offsetA;
1003 fjptrB = f+j_coord_offsetB;
1004 fjptrC = f+j_coord_offsetC;
1005 fjptrD = f+j_coord_offsetD;
1006 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1008 /**************************
1009 * CALCULATE INTERACTIONS *
1010 **************************/
1012 r30 = _mm_mul_ps(rsq30,rinv30);
1014 /* Compute parameters for interactions between i and j atoms */
1015 qq30 = _mm_mul_ps(iq3,jq0);
1017 /* EWALD ELECTROSTATICS */
1019 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1020 ewrt = _mm_mul_ps(r30,ewtabscale);
1021 ewitab = _mm_cvttps_epi32(ewrt);
1022 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1023 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1024 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1026 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1027 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1031 /* Calculate temporary vectorial force */
1032 tx = _mm_mul_ps(fscal,dx30);
1033 ty = _mm_mul_ps(fscal,dy30);
1034 tz = _mm_mul_ps(fscal,dz30);
1036 /* Update vectorial force */
1037 fix3 = _mm_add_ps(fix3,tx);
1038 fiy3 = _mm_add_ps(fiy3,ty);
1039 fiz3 = _mm_add_ps(fiz3,tz);
1041 fjptrA = f+j_coord_offsetA;
1042 fjptrB = f+j_coord_offsetB;
1043 fjptrC = f+j_coord_offsetC;
1044 fjptrD = f+j_coord_offsetD;
1045 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1047 /* Inner loop uses 135 flops */
1050 if(jidx<j_index_end)
1053 /* Get j neighbor index, and coordinate index */
1054 jnrlistA = jjnr[jidx];
1055 jnrlistB = jjnr[jidx+1];
1056 jnrlistC = jjnr[jidx+2];
1057 jnrlistD = jjnr[jidx+3];
1058 /* Sign of each element will be negative for non-real atoms.
1059 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1060 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1062 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1063 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1064 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1065 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1066 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1067 j_coord_offsetA = DIM*jnrA;
1068 j_coord_offsetB = DIM*jnrB;
1069 j_coord_offsetC = DIM*jnrC;
1070 j_coord_offsetD = DIM*jnrD;
1072 /* load j atom coordinates */
1073 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1074 x+j_coord_offsetC,x+j_coord_offsetD,
1077 /* Calculate displacement vector */
1078 dx00 = _mm_sub_ps(ix0,jx0);
1079 dy00 = _mm_sub_ps(iy0,jy0);
1080 dz00 = _mm_sub_ps(iz0,jz0);
1081 dx10 = _mm_sub_ps(ix1,jx0);
1082 dy10 = _mm_sub_ps(iy1,jy0);
1083 dz10 = _mm_sub_ps(iz1,jz0);
1084 dx20 = _mm_sub_ps(ix2,jx0);
1085 dy20 = _mm_sub_ps(iy2,jy0);
1086 dz20 = _mm_sub_ps(iz2,jz0);
1087 dx30 = _mm_sub_ps(ix3,jx0);
1088 dy30 = _mm_sub_ps(iy3,jy0);
1089 dz30 = _mm_sub_ps(iz3,jz0);
1091 /* Calculate squared distance and things based on it */
1092 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1093 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1094 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1095 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1097 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1098 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1099 rinv30 = gmx_mm_invsqrt_ps(rsq30);
1101 rinvsq00 = gmx_mm_inv_ps(rsq00);
1102 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1103 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1104 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
1106 /* Load parameters for j particles */
1107 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1108 charge+jnrC+0,charge+jnrD+0);
1109 vdwjidx0A = 2*vdwtype[jnrA+0];
1110 vdwjidx0B = 2*vdwtype[jnrB+0];
1111 vdwjidx0C = 2*vdwtype[jnrC+0];
1112 vdwjidx0D = 2*vdwtype[jnrD+0];
1114 /**************************
1115 * CALCULATE INTERACTIONS *
1116 **************************/
1118 /* Compute parameters for interactions between i and j atoms */
1119 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1120 vdwparam+vdwioffset0+vdwjidx0B,
1121 vdwparam+vdwioffset0+vdwjidx0C,
1122 vdwparam+vdwioffset0+vdwjidx0D,
1125 /* LENNARD-JONES DISPERSION/REPULSION */
1127 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1128 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1132 fscal = _mm_andnot_ps(dummy_mask,fscal);
1134 /* Calculate temporary vectorial force */
1135 tx = _mm_mul_ps(fscal,dx00);
1136 ty = _mm_mul_ps(fscal,dy00);
1137 tz = _mm_mul_ps(fscal,dz00);
1139 /* Update vectorial force */
1140 fix0 = _mm_add_ps(fix0,tx);
1141 fiy0 = _mm_add_ps(fiy0,ty);
1142 fiz0 = _mm_add_ps(fiz0,tz);
1144 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1145 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1146 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1147 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1148 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1150 /**************************
1151 * CALCULATE INTERACTIONS *
1152 **************************/
1154 r10 = _mm_mul_ps(rsq10,rinv10);
1155 r10 = _mm_andnot_ps(dummy_mask,r10);
1157 /* Compute parameters for interactions between i and j atoms */
1158 qq10 = _mm_mul_ps(iq1,jq0);
1160 /* EWALD ELECTROSTATICS */
1162 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1163 ewrt = _mm_mul_ps(r10,ewtabscale);
1164 ewitab = _mm_cvttps_epi32(ewrt);
1165 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1166 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1167 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1169 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1170 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1174 fscal = _mm_andnot_ps(dummy_mask,fscal);
1176 /* Calculate temporary vectorial force */
1177 tx = _mm_mul_ps(fscal,dx10);
1178 ty = _mm_mul_ps(fscal,dy10);
1179 tz = _mm_mul_ps(fscal,dz10);
1181 /* Update vectorial force */
1182 fix1 = _mm_add_ps(fix1,tx);
1183 fiy1 = _mm_add_ps(fiy1,ty);
1184 fiz1 = _mm_add_ps(fiz1,tz);
1186 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1187 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1188 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1189 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1190 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1192 /**************************
1193 * CALCULATE INTERACTIONS *
1194 **************************/
1196 r20 = _mm_mul_ps(rsq20,rinv20);
1197 r20 = _mm_andnot_ps(dummy_mask,r20);
1199 /* Compute parameters for interactions between i and j atoms */
1200 qq20 = _mm_mul_ps(iq2,jq0);
1202 /* EWALD ELECTROSTATICS */
1204 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1205 ewrt = _mm_mul_ps(r20,ewtabscale);
1206 ewitab = _mm_cvttps_epi32(ewrt);
1207 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1208 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1209 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1211 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1212 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1216 fscal = _mm_andnot_ps(dummy_mask,fscal);
1218 /* Calculate temporary vectorial force */
1219 tx = _mm_mul_ps(fscal,dx20);
1220 ty = _mm_mul_ps(fscal,dy20);
1221 tz = _mm_mul_ps(fscal,dz20);
1223 /* Update vectorial force */
1224 fix2 = _mm_add_ps(fix2,tx);
1225 fiy2 = _mm_add_ps(fiy2,ty);
1226 fiz2 = _mm_add_ps(fiz2,tz);
1228 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1229 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1230 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1231 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1232 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1234 /**************************
1235 * CALCULATE INTERACTIONS *
1236 **************************/
1238 r30 = _mm_mul_ps(rsq30,rinv30);
1239 r30 = _mm_andnot_ps(dummy_mask,r30);
1241 /* Compute parameters for interactions between i and j atoms */
1242 qq30 = _mm_mul_ps(iq3,jq0);
1244 /* EWALD ELECTROSTATICS */
1246 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1247 ewrt = _mm_mul_ps(r30,ewtabscale);
1248 ewitab = _mm_cvttps_epi32(ewrt);
1249 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1250 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1251 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1253 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1254 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1258 fscal = _mm_andnot_ps(dummy_mask,fscal);
1260 /* Calculate temporary vectorial force */
1261 tx = _mm_mul_ps(fscal,dx30);
1262 ty = _mm_mul_ps(fscal,dy30);
1263 tz = _mm_mul_ps(fscal,dz30);
1265 /* Update vectorial force */
1266 fix3 = _mm_add_ps(fix3,tx);
1267 fiy3 = _mm_add_ps(fiy3,ty);
1268 fiz3 = _mm_add_ps(fiz3,tz);
1270 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1271 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1272 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1273 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1274 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,tx,ty,tz);
1276 /* Inner loop uses 138 flops */
1279 /* End of innermost loop */
1281 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1282 f+i_coord_offset,fshift+i_shift_offset);
1284 /* Increment number of inner iterations */
1285 inneriter += j_index_end - j_index_start;
1287 /* Outer loop uses 24 flops */
1290 /* Increment number of outer iterations */
1293 /* Update outer/inner flops */
1295 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*138);