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36 * Note: this file was generated by the GROMACS sse4_1_single kernel generator.
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
47 #include "gromacs/simd/math_x86_sse4_1_single.h"
48 #include "kernelutil_x86_sse4_1_single.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW4P1_VF_sse4_1_single
52 * Electrostatics interaction: Ewald
53 * VdW interaction: LJEwald
54 * Geometry: Water4-Particle
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecEw_VdwLJEw_GeomW4P1_VF_sse4_1_single
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int jnrA,jnrB,jnrC,jnrD;
75 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
82 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
84 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
86 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
88 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
90 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
91 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
92 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
93 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
94 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
95 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
96 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
97 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
100 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
103 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
104 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
109 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
111 __m128 one_half = _mm_set1_ps(0.5);
112 __m128 minus_one = _mm_set1_ps(-1.0);
114 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
116 __m128 dummy_mask,cutoff_mask;
117 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
118 __m128 one = _mm_set1_ps(1.0);
119 __m128 two = _mm_set1_ps(2.0);
125 jindex = nlist->jindex;
127 shiftidx = nlist->shift;
129 shiftvec = fr->shift_vec[0];
130 fshift = fr->fshift[0];
131 facel = _mm_set1_ps(fr->epsfac);
132 charge = mdatoms->chargeA;
133 nvdwtype = fr->ntype;
135 vdwtype = mdatoms->typeA;
136 vdwgridparam = fr->ljpme_c6grid;
137 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
138 ewclj = _mm_set1_ps(fr->ewaldcoeff_lj);
139 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
141 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
142 ewtab = fr->ic->tabq_coul_FDV0;
143 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
144 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
146 /* Setup water-specific parameters */
147 inr = nlist->iinr[0];
148 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
149 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
150 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
151 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
153 /* Avoid stupid compiler warnings */
154 jnrA = jnrB = jnrC = jnrD = 0;
163 for(iidx=0;iidx<4*DIM;iidx++)
168 /* Start outer loop over neighborlists */
169 for(iidx=0; iidx<nri; iidx++)
171 /* Load shift vector for this list */
172 i_shift_offset = DIM*shiftidx[iidx];
174 /* Load limits for loop over neighbors */
175 j_index_start = jindex[iidx];
176 j_index_end = jindex[iidx+1];
178 /* Get outer coordinate index */
180 i_coord_offset = DIM*inr;
182 /* Load i particle coords and add shift vector */
183 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
184 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
186 fix0 = _mm_setzero_ps();
187 fiy0 = _mm_setzero_ps();
188 fiz0 = _mm_setzero_ps();
189 fix1 = _mm_setzero_ps();
190 fiy1 = _mm_setzero_ps();
191 fiz1 = _mm_setzero_ps();
192 fix2 = _mm_setzero_ps();
193 fiy2 = _mm_setzero_ps();
194 fiz2 = _mm_setzero_ps();
195 fix3 = _mm_setzero_ps();
196 fiy3 = _mm_setzero_ps();
197 fiz3 = _mm_setzero_ps();
199 /* Reset potential sums */
200 velecsum = _mm_setzero_ps();
201 vvdwsum = _mm_setzero_ps();
203 /* Start inner kernel loop */
204 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
207 /* Get j neighbor index, and coordinate index */
212 j_coord_offsetA = DIM*jnrA;
213 j_coord_offsetB = DIM*jnrB;
214 j_coord_offsetC = DIM*jnrC;
215 j_coord_offsetD = DIM*jnrD;
217 /* load j atom coordinates */
218 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
219 x+j_coord_offsetC,x+j_coord_offsetD,
222 /* Calculate displacement vector */
223 dx00 = _mm_sub_ps(ix0,jx0);
224 dy00 = _mm_sub_ps(iy0,jy0);
225 dz00 = _mm_sub_ps(iz0,jz0);
226 dx10 = _mm_sub_ps(ix1,jx0);
227 dy10 = _mm_sub_ps(iy1,jy0);
228 dz10 = _mm_sub_ps(iz1,jz0);
229 dx20 = _mm_sub_ps(ix2,jx0);
230 dy20 = _mm_sub_ps(iy2,jy0);
231 dz20 = _mm_sub_ps(iz2,jz0);
232 dx30 = _mm_sub_ps(ix3,jx0);
233 dy30 = _mm_sub_ps(iy3,jy0);
234 dz30 = _mm_sub_ps(iz3,jz0);
236 /* Calculate squared distance and things based on it */
237 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
238 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
239 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
240 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
242 rinv00 = gmx_mm_invsqrt_ps(rsq00);
243 rinv10 = gmx_mm_invsqrt_ps(rsq10);
244 rinv20 = gmx_mm_invsqrt_ps(rsq20);
245 rinv30 = gmx_mm_invsqrt_ps(rsq30);
247 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
248 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
249 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
250 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
252 /* Load parameters for j particles */
253 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
254 charge+jnrC+0,charge+jnrD+0);
255 vdwjidx0A = 2*vdwtype[jnrA+0];
256 vdwjidx0B = 2*vdwtype[jnrB+0];
257 vdwjidx0C = 2*vdwtype[jnrC+0];
258 vdwjidx0D = 2*vdwtype[jnrD+0];
260 fjx0 = _mm_setzero_ps();
261 fjy0 = _mm_setzero_ps();
262 fjz0 = _mm_setzero_ps();
264 /**************************
265 * CALCULATE INTERACTIONS *
266 **************************/
268 r00 = _mm_mul_ps(rsq00,rinv00);
270 /* Compute parameters for interactions between i and j atoms */
271 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
272 vdwparam+vdwioffset0+vdwjidx0B,
273 vdwparam+vdwioffset0+vdwjidx0C,
274 vdwparam+vdwioffset0+vdwjidx0D,
277 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
278 vdwgridparam+vdwioffset0+vdwjidx0B,
279 vdwgridparam+vdwioffset0+vdwjidx0C,
280 vdwgridparam+vdwioffset0+vdwjidx0D);
282 /* Analytical LJ-PME */
283 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
284 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
285 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
286 exponent = gmx_simd_exp_r(ewcljrsq);
287 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
288 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
289 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
290 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
291 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
292 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
293 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
294 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
296 /* Update potential sum for this i atom from the interaction with this j atom. */
297 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
301 /* Calculate temporary vectorial force */
302 tx = _mm_mul_ps(fscal,dx00);
303 ty = _mm_mul_ps(fscal,dy00);
304 tz = _mm_mul_ps(fscal,dz00);
306 /* Update vectorial force */
307 fix0 = _mm_add_ps(fix0,tx);
308 fiy0 = _mm_add_ps(fiy0,ty);
309 fiz0 = _mm_add_ps(fiz0,tz);
311 fjx0 = _mm_add_ps(fjx0,tx);
312 fjy0 = _mm_add_ps(fjy0,ty);
313 fjz0 = _mm_add_ps(fjz0,tz);
315 /**************************
316 * CALCULATE INTERACTIONS *
317 **************************/
319 r10 = _mm_mul_ps(rsq10,rinv10);
321 /* Compute parameters for interactions between i and j atoms */
322 qq10 = _mm_mul_ps(iq1,jq0);
324 /* EWALD ELECTROSTATICS */
326 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
327 ewrt = _mm_mul_ps(r10,ewtabscale);
328 ewitab = _mm_cvttps_epi32(ewrt);
329 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
330 ewitab = _mm_slli_epi32(ewitab,2);
331 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
332 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
333 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
334 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
335 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
336 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
337 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
338 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
339 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
341 /* Update potential sum for this i atom from the interaction with this j atom. */
342 velecsum = _mm_add_ps(velecsum,velec);
346 /* Calculate temporary vectorial force */
347 tx = _mm_mul_ps(fscal,dx10);
348 ty = _mm_mul_ps(fscal,dy10);
349 tz = _mm_mul_ps(fscal,dz10);
351 /* Update vectorial force */
352 fix1 = _mm_add_ps(fix1,tx);
353 fiy1 = _mm_add_ps(fiy1,ty);
354 fiz1 = _mm_add_ps(fiz1,tz);
356 fjx0 = _mm_add_ps(fjx0,tx);
357 fjy0 = _mm_add_ps(fjy0,ty);
358 fjz0 = _mm_add_ps(fjz0,tz);
360 /**************************
361 * CALCULATE INTERACTIONS *
362 **************************/
364 r20 = _mm_mul_ps(rsq20,rinv20);
366 /* Compute parameters for interactions between i and j atoms */
367 qq20 = _mm_mul_ps(iq2,jq0);
369 /* EWALD ELECTROSTATICS */
371 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
372 ewrt = _mm_mul_ps(r20,ewtabscale);
373 ewitab = _mm_cvttps_epi32(ewrt);
374 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
375 ewitab = _mm_slli_epi32(ewitab,2);
376 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
377 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
378 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
379 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
380 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
381 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
382 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
383 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
384 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
386 /* Update potential sum for this i atom from the interaction with this j atom. */
387 velecsum = _mm_add_ps(velecsum,velec);
391 /* Calculate temporary vectorial force */
392 tx = _mm_mul_ps(fscal,dx20);
393 ty = _mm_mul_ps(fscal,dy20);
394 tz = _mm_mul_ps(fscal,dz20);
396 /* Update vectorial force */
397 fix2 = _mm_add_ps(fix2,tx);
398 fiy2 = _mm_add_ps(fiy2,ty);
399 fiz2 = _mm_add_ps(fiz2,tz);
401 fjx0 = _mm_add_ps(fjx0,tx);
402 fjy0 = _mm_add_ps(fjy0,ty);
403 fjz0 = _mm_add_ps(fjz0,tz);
405 /**************************
406 * CALCULATE INTERACTIONS *
407 **************************/
409 r30 = _mm_mul_ps(rsq30,rinv30);
411 /* Compute parameters for interactions between i and j atoms */
412 qq30 = _mm_mul_ps(iq3,jq0);
414 /* EWALD ELECTROSTATICS */
416 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
417 ewrt = _mm_mul_ps(r30,ewtabscale);
418 ewitab = _mm_cvttps_epi32(ewrt);
419 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
420 ewitab = _mm_slli_epi32(ewitab,2);
421 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
422 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
423 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
424 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
425 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
426 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
427 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
428 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
429 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
431 /* Update potential sum for this i atom from the interaction with this j atom. */
432 velecsum = _mm_add_ps(velecsum,velec);
436 /* Calculate temporary vectorial force */
437 tx = _mm_mul_ps(fscal,dx30);
438 ty = _mm_mul_ps(fscal,dy30);
439 tz = _mm_mul_ps(fscal,dz30);
441 /* Update vectorial force */
442 fix3 = _mm_add_ps(fix3,tx);
443 fiy3 = _mm_add_ps(fiy3,ty);
444 fiz3 = _mm_add_ps(fiz3,tz);
446 fjx0 = _mm_add_ps(fjx0,tx);
447 fjy0 = _mm_add_ps(fjy0,ty);
448 fjz0 = _mm_add_ps(fjz0,tz);
450 fjptrA = f+j_coord_offsetA;
451 fjptrB = f+j_coord_offsetB;
452 fjptrC = f+j_coord_offsetC;
453 fjptrD = f+j_coord_offsetD;
455 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
457 /* Inner loop uses 174 flops */
463 /* Get j neighbor index, and coordinate index */
464 jnrlistA = jjnr[jidx];
465 jnrlistB = jjnr[jidx+1];
466 jnrlistC = jjnr[jidx+2];
467 jnrlistD = jjnr[jidx+3];
468 /* Sign of each element will be negative for non-real atoms.
469 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
470 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
472 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
473 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
474 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
475 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
476 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
477 j_coord_offsetA = DIM*jnrA;
478 j_coord_offsetB = DIM*jnrB;
479 j_coord_offsetC = DIM*jnrC;
480 j_coord_offsetD = DIM*jnrD;
482 /* load j atom coordinates */
483 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
484 x+j_coord_offsetC,x+j_coord_offsetD,
487 /* Calculate displacement vector */
488 dx00 = _mm_sub_ps(ix0,jx0);
489 dy00 = _mm_sub_ps(iy0,jy0);
490 dz00 = _mm_sub_ps(iz0,jz0);
491 dx10 = _mm_sub_ps(ix1,jx0);
492 dy10 = _mm_sub_ps(iy1,jy0);
493 dz10 = _mm_sub_ps(iz1,jz0);
494 dx20 = _mm_sub_ps(ix2,jx0);
495 dy20 = _mm_sub_ps(iy2,jy0);
496 dz20 = _mm_sub_ps(iz2,jz0);
497 dx30 = _mm_sub_ps(ix3,jx0);
498 dy30 = _mm_sub_ps(iy3,jy0);
499 dz30 = _mm_sub_ps(iz3,jz0);
501 /* Calculate squared distance and things based on it */
502 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
503 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
504 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
505 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
507 rinv00 = gmx_mm_invsqrt_ps(rsq00);
508 rinv10 = gmx_mm_invsqrt_ps(rsq10);
509 rinv20 = gmx_mm_invsqrt_ps(rsq20);
510 rinv30 = gmx_mm_invsqrt_ps(rsq30);
512 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
513 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
514 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
515 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
517 /* Load parameters for j particles */
518 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
519 charge+jnrC+0,charge+jnrD+0);
520 vdwjidx0A = 2*vdwtype[jnrA+0];
521 vdwjidx0B = 2*vdwtype[jnrB+0];
522 vdwjidx0C = 2*vdwtype[jnrC+0];
523 vdwjidx0D = 2*vdwtype[jnrD+0];
525 fjx0 = _mm_setzero_ps();
526 fjy0 = _mm_setzero_ps();
527 fjz0 = _mm_setzero_ps();
529 /**************************
530 * CALCULATE INTERACTIONS *
531 **************************/
533 r00 = _mm_mul_ps(rsq00,rinv00);
534 r00 = _mm_andnot_ps(dummy_mask,r00);
536 /* Compute parameters for interactions between i and j atoms */
537 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
538 vdwparam+vdwioffset0+vdwjidx0B,
539 vdwparam+vdwioffset0+vdwjidx0C,
540 vdwparam+vdwioffset0+vdwjidx0D,
543 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
544 vdwgridparam+vdwioffset0+vdwjidx0B,
545 vdwgridparam+vdwioffset0+vdwjidx0C,
546 vdwgridparam+vdwioffset0+vdwjidx0D);
548 /* Analytical LJ-PME */
549 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
550 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
551 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
552 exponent = gmx_simd_exp_r(ewcljrsq);
553 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
554 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
555 /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
556 vvdw6 = _mm_mul_ps(_mm_sub_ps(c6_00,_mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly))),rinvsix);
557 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
558 vvdw = _mm_sub_ps(_mm_mul_ps(vvdw12,one_twelfth),_mm_mul_ps(vvdw6,one_sixth));
559 /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
560 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,_mm_sub_ps(vvdw6,_mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6)))),rinvsq00);
562 /* Update potential sum for this i atom from the interaction with this j atom. */
563 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
564 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
568 fscal = _mm_andnot_ps(dummy_mask,fscal);
570 /* Calculate temporary vectorial force */
571 tx = _mm_mul_ps(fscal,dx00);
572 ty = _mm_mul_ps(fscal,dy00);
573 tz = _mm_mul_ps(fscal,dz00);
575 /* Update vectorial force */
576 fix0 = _mm_add_ps(fix0,tx);
577 fiy0 = _mm_add_ps(fiy0,ty);
578 fiz0 = _mm_add_ps(fiz0,tz);
580 fjx0 = _mm_add_ps(fjx0,tx);
581 fjy0 = _mm_add_ps(fjy0,ty);
582 fjz0 = _mm_add_ps(fjz0,tz);
584 /**************************
585 * CALCULATE INTERACTIONS *
586 **************************/
588 r10 = _mm_mul_ps(rsq10,rinv10);
589 r10 = _mm_andnot_ps(dummy_mask,r10);
591 /* Compute parameters for interactions between i and j atoms */
592 qq10 = _mm_mul_ps(iq1,jq0);
594 /* EWALD ELECTROSTATICS */
596 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
597 ewrt = _mm_mul_ps(r10,ewtabscale);
598 ewitab = _mm_cvttps_epi32(ewrt);
599 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
600 ewitab = _mm_slli_epi32(ewitab,2);
601 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
602 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
603 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
604 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
605 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
606 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
607 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
608 velec = _mm_mul_ps(qq10,_mm_sub_ps(rinv10,velec));
609 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
611 /* Update potential sum for this i atom from the interaction with this j atom. */
612 velec = _mm_andnot_ps(dummy_mask,velec);
613 velecsum = _mm_add_ps(velecsum,velec);
617 fscal = _mm_andnot_ps(dummy_mask,fscal);
619 /* Calculate temporary vectorial force */
620 tx = _mm_mul_ps(fscal,dx10);
621 ty = _mm_mul_ps(fscal,dy10);
622 tz = _mm_mul_ps(fscal,dz10);
624 /* Update vectorial force */
625 fix1 = _mm_add_ps(fix1,tx);
626 fiy1 = _mm_add_ps(fiy1,ty);
627 fiz1 = _mm_add_ps(fiz1,tz);
629 fjx0 = _mm_add_ps(fjx0,tx);
630 fjy0 = _mm_add_ps(fjy0,ty);
631 fjz0 = _mm_add_ps(fjz0,tz);
633 /**************************
634 * CALCULATE INTERACTIONS *
635 **************************/
637 r20 = _mm_mul_ps(rsq20,rinv20);
638 r20 = _mm_andnot_ps(dummy_mask,r20);
640 /* Compute parameters for interactions between i and j atoms */
641 qq20 = _mm_mul_ps(iq2,jq0);
643 /* EWALD ELECTROSTATICS */
645 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
646 ewrt = _mm_mul_ps(r20,ewtabscale);
647 ewitab = _mm_cvttps_epi32(ewrt);
648 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
649 ewitab = _mm_slli_epi32(ewitab,2);
650 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
651 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
652 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
653 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
654 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
655 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
656 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
657 velec = _mm_mul_ps(qq20,_mm_sub_ps(rinv20,velec));
658 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
660 /* Update potential sum for this i atom from the interaction with this j atom. */
661 velec = _mm_andnot_ps(dummy_mask,velec);
662 velecsum = _mm_add_ps(velecsum,velec);
666 fscal = _mm_andnot_ps(dummy_mask,fscal);
668 /* Calculate temporary vectorial force */
669 tx = _mm_mul_ps(fscal,dx20);
670 ty = _mm_mul_ps(fscal,dy20);
671 tz = _mm_mul_ps(fscal,dz20);
673 /* Update vectorial force */
674 fix2 = _mm_add_ps(fix2,tx);
675 fiy2 = _mm_add_ps(fiy2,ty);
676 fiz2 = _mm_add_ps(fiz2,tz);
678 fjx0 = _mm_add_ps(fjx0,tx);
679 fjy0 = _mm_add_ps(fjy0,ty);
680 fjz0 = _mm_add_ps(fjz0,tz);
682 /**************************
683 * CALCULATE INTERACTIONS *
684 **************************/
686 r30 = _mm_mul_ps(rsq30,rinv30);
687 r30 = _mm_andnot_ps(dummy_mask,r30);
689 /* Compute parameters for interactions between i and j atoms */
690 qq30 = _mm_mul_ps(iq3,jq0);
692 /* EWALD ELECTROSTATICS */
694 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
695 ewrt = _mm_mul_ps(r30,ewtabscale);
696 ewitab = _mm_cvttps_epi32(ewrt);
697 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
698 ewitab = _mm_slli_epi32(ewitab,2);
699 ewtabF = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,0) );
700 ewtabD = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,1) );
701 ewtabV = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,2) );
702 ewtabFn = _mm_load_ps( ewtab + gmx_mm_extract_epi32(ewitab,3) );
703 _MM_TRANSPOSE4_PS(ewtabF,ewtabD,ewtabV,ewtabFn);
704 felec = _mm_add_ps(ewtabF,_mm_mul_ps(eweps,ewtabD));
705 velec = _mm_sub_ps(ewtabV,_mm_mul_ps(_mm_mul_ps(ewtabhalfspace,eweps),_mm_add_ps(ewtabF,felec)));
706 velec = _mm_mul_ps(qq30,_mm_sub_ps(rinv30,velec));
707 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
709 /* Update potential sum for this i atom from the interaction with this j atom. */
710 velec = _mm_andnot_ps(dummy_mask,velec);
711 velecsum = _mm_add_ps(velecsum,velec);
715 fscal = _mm_andnot_ps(dummy_mask,fscal);
717 /* Calculate temporary vectorial force */
718 tx = _mm_mul_ps(fscal,dx30);
719 ty = _mm_mul_ps(fscal,dy30);
720 tz = _mm_mul_ps(fscal,dz30);
722 /* Update vectorial force */
723 fix3 = _mm_add_ps(fix3,tx);
724 fiy3 = _mm_add_ps(fiy3,ty);
725 fiz3 = _mm_add_ps(fiz3,tz);
727 fjx0 = _mm_add_ps(fjx0,tx);
728 fjy0 = _mm_add_ps(fjy0,ty);
729 fjz0 = _mm_add_ps(fjz0,tz);
731 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
732 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
733 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
734 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
736 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
738 /* Inner loop uses 178 flops */
741 /* End of innermost loop */
743 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
744 f+i_coord_offset,fshift+i_shift_offset);
747 /* Update potential energies */
748 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
749 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
751 /* Increment number of inner iterations */
752 inneriter += j_index_end - j_index_start;
754 /* Outer loop uses 26 flops */
757 /* Increment number of outer iterations */
760 /* Update outer/inner flops */
762 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*178);
765 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwLJEw_GeomW4P1_F_sse4_1_single
766 * Electrostatics interaction: Ewald
767 * VdW interaction: LJEwald
768 * Geometry: Water4-Particle
769 * Calculate force/pot: Force
772 nb_kernel_ElecEw_VdwLJEw_GeomW4P1_F_sse4_1_single
773 (t_nblist * gmx_restrict nlist,
774 rvec * gmx_restrict xx,
775 rvec * gmx_restrict ff,
776 t_forcerec * gmx_restrict fr,
777 t_mdatoms * gmx_restrict mdatoms,
778 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
779 t_nrnb * gmx_restrict nrnb)
781 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
782 * just 0 for non-waters.
783 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
784 * jnr indices corresponding to data put in the four positions in the SIMD register.
786 int i_shift_offset,i_coord_offset,outeriter,inneriter;
787 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
788 int jnrA,jnrB,jnrC,jnrD;
789 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
790 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
791 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
793 real *shiftvec,*fshift,*x,*f;
794 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
796 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
798 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
800 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
802 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
804 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
805 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
806 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
807 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
808 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
809 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
810 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
811 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
814 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
817 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
818 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
823 __m128 ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
825 __m128 one_half = _mm_set1_ps(0.5);
826 __m128 minus_one = _mm_set1_ps(-1.0);
828 __m128 ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
830 __m128 dummy_mask,cutoff_mask;
831 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
832 __m128 one = _mm_set1_ps(1.0);
833 __m128 two = _mm_set1_ps(2.0);
839 jindex = nlist->jindex;
841 shiftidx = nlist->shift;
843 shiftvec = fr->shift_vec[0];
844 fshift = fr->fshift[0];
845 facel = _mm_set1_ps(fr->epsfac);
846 charge = mdatoms->chargeA;
847 nvdwtype = fr->ntype;
849 vdwtype = mdatoms->typeA;
850 vdwgridparam = fr->ljpme_c6grid;
851 sh_lj_ewald = _mm_set1_ps(fr->ic->sh_lj_ewald);
852 ewclj = _mm_set1_ps(fr->ewaldcoeff_lj);
853 ewclj2 = _mm_mul_ps(minus_one,_mm_mul_ps(ewclj,ewclj));
855 sh_ewald = _mm_set1_ps(fr->ic->sh_ewald);
856 ewtab = fr->ic->tabq_coul_F;
857 ewtabscale = _mm_set1_ps(fr->ic->tabq_scale);
858 ewtabhalfspace = _mm_set1_ps(0.5/fr->ic->tabq_scale);
860 /* Setup water-specific parameters */
861 inr = nlist->iinr[0];
862 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
863 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
864 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
865 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
867 /* Avoid stupid compiler warnings */
868 jnrA = jnrB = jnrC = jnrD = 0;
877 for(iidx=0;iidx<4*DIM;iidx++)
882 /* Start outer loop over neighborlists */
883 for(iidx=0; iidx<nri; iidx++)
885 /* Load shift vector for this list */
886 i_shift_offset = DIM*shiftidx[iidx];
888 /* Load limits for loop over neighbors */
889 j_index_start = jindex[iidx];
890 j_index_end = jindex[iidx+1];
892 /* Get outer coordinate index */
894 i_coord_offset = DIM*inr;
896 /* Load i particle coords and add shift vector */
897 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
898 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
900 fix0 = _mm_setzero_ps();
901 fiy0 = _mm_setzero_ps();
902 fiz0 = _mm_setzero_ps();
903 fix1 = _mm_setzero_ps();
904 fiy1 = _mm_setzero_ps();
905 fiz1 = _mm_setzero_ps();
906 fix2 = _mm_setzero_ps();
907 fiy2 = _mm_setzero_ps();
908 fiz2 = _mm_setzero_ps();
909 fix3 = _mm_setzero_ps();
910 fiy3 = _mm_setzero_ps();
911 fiz3 = _mm_setzero_ps();
913 /* Start inner kernel loop */
914 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
917 /* Get j neighbor index, and coordinate index */
922 j_coord_offsetA = DIM*jnrA;
923 j_coord_offsetB = DIM*jnrB;
924 j_coord_offsetC = DIM*jnrC;
925 j_coord_offsetD = DIM*jnrD;
927 /* load j atom coordinates */
928 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
929 x+j_coord_offsetC,x+j_coord_offsetD,
932 /* Calculate displacement vector */
933 dx00 = _mm_sub_ps(ix0,jx0);
934 dy00 = _mm_sub_ps(iy0,jy0);
935 dz00 = _mm_sub_ps(iz0,jz0);
936 dx10 = _mm_sub_ps(ix1,jx0);
937 dy10 = _mm_sub_ps(iy1,jy0);
938 dz10 = _mm_sub_ps(iz1,jz0);
939 dx20 = _mm_sub_ps(ix2,jx0);
940 dy20 = _mm_sub_ps(iy2,jy0);
941 dz20 = _mm_sub_ps(iz2,jz0);
942 dx30 = _mm_sub_ps(ix3,jx0);
943 dy30 = _mm_sub_ps(iy3,jy0);
944 dz30 = _mm_sub_ps(iz3,jz0);
946 /* Calculate squared distance and things based on it */
947 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
948 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
949 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
950 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
952 rinv00 = gmx_mm_invsqrt_ps(rsq00);
953 rinv10 = gmx_mm_invsqrt_ps(rsq10);
954 rinv20 = gmx_mm_invsqrt_ps(rsq20);
955 rinv30 = gmx_mm_invsqrt_ps(rsq30);
957 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
958 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
959 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
960 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
962 /* Load parameters for j particles */
963 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
964 charge+jnrC+0,charge+jnrD+0);
965 vdwjidx0A = 2*vdwtype[jnrA+0];
966 vdwjidx0B = 2*vdwtype[jnrB+0];
967 vdwjidx0C = 2*vdwtype[jnrC+0];
968 vdwjidx0D = 2*vdwtype[jnrD+0];
970 fjx0 = _mm_setzero_ps();
971 fjy0 = _mm_setzero_ps();
972 fjz0 = _mm_setzero_ps();
974 /**************************
975 * CALCULATE INTERACTIONS *
976 **************************/
978 r00 = _mm_mul_ps(rsq00,rinv00);
980 /* Compute parameters for interactions between i and j atoms */
981 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
982 vdwparam+vdwioffset0+vdwjidx0B,
983 vdwparam+vdwioffset0+vdwjidx0C,
984 vdwparam+vdwioffset0+vdwjidx0D,
987 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
988 vdwgridparam+vdwioffset0+vdwjidx0B,
989 vdwgridparam+vdwioffset0+vdwjidx0C,
990 vdwgridparam+vdwioffset0+vdwjidx0D);
992 /* Analytical LJ-PME */
993 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
994 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
995 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
996 exponent = gmx_simd_exp_r(ewcljrsq);
997 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
998 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
999 /* f6A = 6 * C6grid * (1 - poly) */
1000 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
1001 /* f6B = C6grid * exponent * beta^6 */
1002 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
1003 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1004 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1008 /* Calculate temporary vectorial force */
1009 tx = _mm_mul_ps(fscal,dx00);
1010 ty = _mm_mul_ps(fscal,dy00);
1011 tz = _mm_mul_ps(fscal,dz00);
1013 /* Update vectorial force */
1014 fix0 = _mm_add_ps(fix0,tx);
1015 fiy0 = _mm_add_ps(fiy0,ty);
1016 fiz0 = _mm_add_ps(fiz0,tz);
1018 fjx0 = _mm_add_ps(fjx0,tx);
1019 fjy0 = _mm_add_ps(fjy0,ty);
1020 fjz0 = _mm_add_ps(fjz0,tz);
1022 /**************************
1023 * CALCULATE INTERACTIONS *
1024 **************************/
1026 r10 = _mm_mul_ps(rsq10,rinv10);
1028 /* Compute parameters for interactions between i and j atoms */
1029 qq10 = _mm_mul_ps(iq1,jq0);
1031 /* EWALD ELECTROSTATICS */
1033 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1034 ewrt = _mm_mul_ps(r10,ewtabscale);
1035 ewitab = _mm_cvttps_epi32(ewrt);
1036 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1037 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1038 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1040 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1041 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1045 /* Calculate temporary vectorial force */
1046 tx = _mm_mul_ps(fscal,dx10);
1047 ty = _mm_mul_ps(fscal,dy10);
1048 tz = _mm_mul_ps(fscal,dz10);
1050 /* Update vectorial force */
1051 fix1 = _mm_add_ps(fix1,tx);
1052 fiy1 = _mm_add_ps(fiy1,ty);
1053 fiz1 = _mm_add_ps(fiz1,tz);
1055 fjx0 = _mm_add_ps(fjx0,tx);
1056 fjy0 = _mm_add_ps(fjy0,ty);
1057 fjz0 = _mm_add_ps(fjz0,tz);
1059 /**************************
1060 * CALCULATE INTERACTIONS *
1061 **************************/
1063 r20 = _mm_mul_ps(rsq20,rinv20);
1065 /* Compute parameters for interactions between i and j atoms */
1066 qq20 = _mm_mul_ps(iq2,jq0);
1068 /* EWALD ELECTROSTATICS */
1070 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1071 ewrt = _mm_mul_ps(r20,ewtabscale);
1072 ewitab = _mm_cvttps_epi32(ewrt);
1073 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1074 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1075 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1077 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1078 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1082 /* Calculate temporary vectorial force */
1083 tx = _mm_mul_ps(fscal,dx20);
1084 ty = _mm_mul_ps(fscal,dy20);
1085 tz = _mm_mul_ps(fscal,dz20);
1087 /* Update vectorial force */
1088 fix2 = _mm_add_ps(fix2,tx);
1089 fiy2 = _mm_add_ps(fiy2,ty);
1090 fiz2 = _mm_add_ps(fiz2,tz);
1092 fjx0 = _mm_add_ps(fjx0,tx);
1093 fjy0 = _mm_add_ps(fjy0,ty);
1094 fjz0 = _mm_add_ps(fjz0,tz);
1096 /**************************
1097 * CALCULATE INTERACTIONS *
1098 **************************/
1100 r30 = _mm_mul_ps(rsq30,rinv30);
1102 /* Compute parameters for interactions between i and j atoms */
1103 qq30 = _mm_mul_ps(iq3,jq0);
1105 /* EWALD ELECTROSTATICS */
1107 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1108 ewrt = _mm_mul_ps(r30,ewtabscale);
1109 ewitab = _mm_cvttps_epi32(ewrt);
1110 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1111 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1112 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1114 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1115 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1119 /* Calculate temporary vectorial force */
1120 tx = _mm_mul_ps(fscal,dx30);
1121 ty = _mm_mul_ps(fscal,dy30);
1122 tz = _mm_mul_ps(fscal,dz30);
1124 /* Update vectorial force */
1125 fix3 = _mm_add_ps(fix3,tx);
1126 fiy3 = _mm_add_ps(fiy3,ty);
1127 fiz3 = _mm_add_ps(fiz3,tz);
1129 fjx0 = _mm_add_ps(fjx0,tx);
1130 fjy0 = _mm_add_ps(fjy0,ty);
1131 fjz0 = _mm_add_ps(fjz0,tz);
1133 fjptrA = f+j_coord_offsetA;
1134 fjptrB = f+j_coord_offsetB;
1135 fjptrC = f+j_coord_offsetC;
1136 fjptrD = f+j_coord_offsetD;
1138 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1140 /* Inner loop uses 154 flops */
1143 if(jidx<j_index_end)
1146 /* Get j neighbor index, and coordinate index */
1147 jnrlistA = jjnr[jidx];
1148 jnrlistB = jjnr[jidx+1];
1149 jnrlistC = jjnr[jidx+2];
1150 jnrlistD = jjnr[jidx+3];
1151 /* Sign of each element will be negative for non-real atoms.
1152 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1153 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1155 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1156 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1157 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1158 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1159 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1160 j_coord_offsetA = DIM*jnrA;
1161 j_coord_offsetB = DIM*jnrB;
1162 j_coord_offsetC = DIM*jnrC;
1163 j_coord_offsetD = DIM*jnrD;
1165 /* load j atom coordinates */
1166 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1167 x+j_coord_offsetC,x+j_coord_offsetD,
1170 /* Calculate displacement vector */
1171 dx00 = _mm_sub_ps(ix0,jx0);
1172 dy00 = _mm_sub_ps(iy0,jy0);
1173 dz00 = _mm_sub_ps(iz0,jz0);
1174 dx10 = _mm_sub_ps(ix1,jx0);
1175 dy10 = _mm_sub_ps(iy1,jy0);
1176 dz10 = _mm_sub_ps(iz1,jz0);
1177 dx20 = _mm_sub_ps(ix2,jx0);
1178 dy20 = _mm_sub_ps(iy2,jy0);
1179 dz20 = _mm_sub_ps(iz2,jz0);
1180 dx30 = _mm_sub_ps(ix3,jx0);
1181 dy30 = _mm_sub_ps(iy3,jy0);
1182 dz30 = _mm_sub_ps(iz3,jz0);
1184 /* Calculate squared distance and things based on it */
1185 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1186 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1187 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1188 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1190 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1191 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1192 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1193 rinv30 = gmx_mm_invsqrt_ps(rsq30);
1195 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1196 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1197 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1198 rinvsq30 = _mm_mul_ps(rinv30,rinv30);
1200 /* Load parameters for j particles */
1201 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1202 charge+jnrC+0,charge+jnrD+0);
1203 vdwjidx0A = 2*vdwtype[jnrA+0];
1204 vdwjidx0B = 2*vdwtype[jnrB+0];
1205 vdwjidx0C = 2*vdwtype[jnrC+0];
1206 vdwjidx0D = 2*vdwtype[jnrD+0];
1208 fjx0 = _mm_setzero_ps();
1209 fjy0 = _mm_setzero_ps();
1210 fjz0 = _mm_setzero_ps();
1212 /**************************
1213 * CALCULATE INTERACTIONS *
1214 **************************/
1216 r00 = _mm_mul_ps(rsq00,rinv00);
1217 r00 = _mm_andnot_ps(dummy_mask,r00);
1219 /* Compute parameters for interactions between i and j atoms */
1220 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1221 vdwparam+vdwioffset0+vdwjidx0B,
1222 vdwparam+vdwioffset0+vdwjidx0C,
1223 vdwparam+vdwioffset0+vdwjidx0D,
1226 c6grid_00 = gmx_mm_load_4real_swizzle_ps(vdwgridparam+vdwioffset0+vdwjidx0A,
1227 vdwgridparam+vdwioffset0+vdwjidx0B,
1228 vdwgridparam+vdwioffset0+vdwjidx0C,
1229 vdwgridparam+vdwioffset0+vdwjidx0D);
1231 /* Analytical LJ-PME */
1232 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1233 ewcljrsq = _mm_mul_ps(ewclj2,rsq00);
1234 ewclj6 = _mm_mul_ps(ewclj2,_mm_mul_ps(ewclj2,ewclj2));
1235 exponent = gmx_simd_exp_r(ewcljrsq);
1236 /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
1237 poly = _mm_mul_ps(exponent,_mm_add_ps(_mm_sub_ps(one,ewcljrsq),_mm_mul_ps(_mm_mul_ps(ewcljrsq,ewcljrsq),one_half)));
1238 /* f6A = 6 * C6grid * (1 - poly) */
1239 f6A = _mm_mul_ps(c6grid_00,_mm_sub_ps(one,poly));
1240 /* f6B = C6grid * exponent * beta^6 */
1241 f6B = _mm_mul_ps(_mm_mul_ps(c6grid_00,one_sixth),_mm_mul_ps(exponent,ewclj6));
1242 /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
1243 fvdw = _mm_mul_ps(_mm_add_ps(_mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),_mm_sub_ps(c6_00,f6A)),rinvsix),f6B),rinvsq00);
1247 fscal = _mm_andnot_ps(dummy_mask,fscal);
1249 /* Calculate temporary vectorial force */
1250 tx = _mm_mul_ps(fscal,dx00);
1251 ty = _mm_mul_ps(fscal,dy00);
1252 tz = _mm_mul_ps(fscal,dz00);
1254 /* Update vectorial force */
1255 fix0 = _mm_add_ps(fix0,tx);
1256 fiy0 = _mm_add_ps(fiy0,ty);
1257 fiz0 = _mm_add_ps(fiz0,tz);
1259 fjx0 = _mm_add_ps(fjx0,tx);
1260 fjy0 = _mm_add_ps(fjy0,ty);
1261 fjz0 = _mm_add_ps(fjz0,tz);
1263 /**************************
1264 * CALCULATE INTERACTIONS *
1265 **************************/
1267 r10 = _mm_mul_ps(rsq10,rinv10);
1268 r10 = _mm_andnot_ps(dummy_mask,r10);
1270 /* Compute parameters for interactions between i and j atoms */
1271 qq10 = _mm_mul_ps(iq1,jq0);
1273 /* EWALD ELECTROSTATICS */
1275 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1276 ewrt = _mm_mul_ps(r10,ewtabscale);
1277 ewitab = _mm_cvttps_epi32(ewrt);
1278 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1279 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1280 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1282 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1283 felec = _mm_mul_ps(_mm_mul_ps(qq10,rinv10),_mm_sub_ps(rinvsq10,felec));
1287 fscal = _mm_andnot_ps(dummy_mask,fscal);
1289 /* Calculate temporary vectorial force */
1290 tx = _mm_mul_ps(fscal,dx10);
1291 ty = _mm_mul_ps(fscal,dy10);
1292 tz = _mm_mul_ps(fscal,dz10);
1294 /* Update vectorial force */
1295 fix1 = _mm_add_ps(fix1,tx);
1296 fiy1 = _mm_add_ps(fiy1,ty);
1297 fiz1 = _mm_add_ps(fiz1,tz);
1299 fjx0 = _mm_add_ps(fjx0,tx);
1300 fjy0 = _mm_add_ps(fjy0,ty);
1301 fjz0 = _mm_add_ps(fjz0,tz);
1303 /**************************
1304 * CALCULATE INTERACTIONS *
1305 **************************/
1307 r20 = _mm_mul_ps(rsq20,rinv20);
1308 r20 = _mm_andnot_ps(dummy_mask,r20);
1310 /* Compute parameters for interactions between i and j atoms */
1311 qq20 = _mm_mul_ps(iq2,jq0);
1313 /* EWALD ELECTROSTATICS */
1315 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1316 ewrt = _mm_mul_ps(r20,ewtabscale);
1317 ewitab = _mm_cvttps_epi32(ewrt);
1318 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1319 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1320 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1322 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1323 felec = _mm_mul_ps(_mm_mul_ps(qq20,rinv20),_mm_sub_ps(rinvsq20,felec));
1327 fscal = _mm_andnot_ps(dummy_mask,fscal);
1329 /* Calculate temporary vectorial force */
1330 tx = _mm_mul_ps(fscal,dx20);
1331 ty = _mm_mul_ps(fscal,dy20);
1332 tz = _mm_mul_ps(fscal,dz20);
1334 /* Update vectorial force */
1335 fix2 = _mm_add_ps(fix2,tx);
1336 fiy2 = _mm_add_ps(fiy2,ty);
1337 fiz2 = _mm_add_ps(fiz2,tz);
1339 fjx0 = _mm_add_ps(fjx0,tx);
1340 fjy0 = _mm_add_ps(fjy0,ty);
1341 fjz0 = _mm_add_ps(fjz0,tz);
1343 /**************************
1344 * CALCULATE INTERACTIONS *
1345 **************************/
1347 r30 = _mm_mul_ps(rsq30,rinv30);
1348 r30 = _mm_andnot_ps(dummy_mask,r30);
1350 /* Compute parameters for interactions between i and j atoms */
1351 qq30 = _mm_mul_ps(iq3,jq0);
1353 /* EWALD ELECTROSTATICS */
1355 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
1356 ewrt = _mm_mul_ps(r30,ewtabscale);
1357 ewitab = _mm_cvttps_epi32(ewrt);
1358 eweps = _mm_sub_ps(ewrt,_mm_round_ps(ewrt, _MM_FROUND_FLOOR));
1359 gmx_mm_load_4pair_swizzle_ps(ewtab + gmx_mm_extract_epi32(ewitab,0),ewtab + gmx_mm_extract_epi32(ewitab,1),
1360 ewtab + gmx_mm_extract_epi32(ewitab,2),ewtab + gmx_mm_extract_epi32(ewitab,3),
1362 felec = _mm_add_ps(_mm_mul_ps( _mm_sub_ps(one,eweps),ewtabF),_mm_mul_ps(eweps,ewtabFn));
1363 felec = _mm_mul_ps(_mm_mul_ps(qq30,rinv30),_mm_sub_ps(rinvsq30,felec));
1367 fscal = _mm_andnot_ps(dummy_mask,fscal);
1369 /* Calculate temporary vectorial force */
1370 tx = _mm_mul_ps(fscal,dx30);
1371 ty = _mm_mul_ps(fscal,dy30);
1372 tz = _mm_mul_ps(fscal,dz30);
1374 /* Update vectorial force */
1375 fix3 = _mm_add_ps(fix3,tx);
1376 fiy3 = _mm_add_ps(fiy3,ty);
1377 fiz3 = _mm_add_ps(fiz3,tz);
1379 fjx0 = _mm_add_ps(fjx0,tx);
1380 fjy0 = _mm_add_ps(fjy0,ty);
1381 fjz0 = _mm_add_ps(fjz0,tz);
1383 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1384 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1385 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1386 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1388 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1390 /* Inner loop uses 158 flops */
1393 /* End of innermost loop */
1395 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1396 f+i_coord_offset,fshift+i_shift_offset);
1398 /* Increment number of inner iterations */
1399 inneriter += j_index_end - j_index_start;
1401 /* Outer loop uses 24 flops */
1404 /* Increment number of outer iterations */
1407 /* Update outer/inner flops */
1409 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*158);