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36 * Note: this file was generated by the GROMACS sse4_1_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse4_1_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_VF_sse4_1_single
51 * Electrostatics interaction: Coulomb
52 * VdW interaction: CubicSplineTable
53 * Geometry: Water3-Water3
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_VF_sse4_1_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
75 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
81 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
89 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
91 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
92 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
93 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
94 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
95 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
96 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
97 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
98 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
99 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
100 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
101 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
102 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
103 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
106 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
109 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
110 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
112 __m128i ifour = _mm_set1_epi32(4);
113 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
115 __m128 dummy_mask,cutoff_mask;
116 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
117 __m128 one = _mm_set1_ps(1.0);
118 __m128 two = _mm_set1_ps(2.0);
124 jindex = nlist->jindex;
126 shiftidx = nlist->shift;
128 shiftvec = fr->shift_vec[0];
129 fshift = fr->fshift[0];
130 facel = _mm_set1_ps(fr->ic->epsfac);
131 charge = mdatoms->chargeA;
132 nvdwtype = fr->ntype;
134 vdwtype = mdatoms->typeA;
136 vftab = kernel_data->table_vdw->data;
137 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
139 /* Setup water-specific parameters */
140 inr = nlist->iinr[0];
141 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
142 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
143 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
144 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
146 jq0 = _mm_set1_ps(charge[inr+0]);
147 jq1 = _mm_set1_ps(charge[inr+1]);
148 jq2 = _mm_set1_ps(charge[inr+2]);
149 vdwjidx0A = 2*vdwtype[inr+0];
150 qq00 = _mm_mul_ps(iq0,jq0);
151 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
152 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
153 qq01 = _mm_mul_ps(iq0,jq1);
154 qq02 = _mm_mul_ps(iq0,jq2);
155 qq10 = _mm_mul_ps(iq1,jq0);
156 qq11 = _mm_mul_ps(iq1,jq1);
157 qq12 = _mm_mul_ps(iq1,jq2);
158 qq20 = _mm_mul_ps(iq2,jq0);
159 qq21 = _mm_mul_ps(iq2,jq1);
160 qq22 = _mm_mul_ps(iq2,jq2);
162 /* Avoid stupid compiler warnings */
163 jnrA = jnrB = jnrC = jnrD = 0;
172 for(iidx=0;iidx<4*DIM;iidx++)
177 /* Start outer loop over neighborlists */
178 for(iidx=0; iidx<nri; iidx++)
180 /* Load shift vector for this list */
181 i_shift_offset = DIM*shiftidx[iidx];
183 /* Load limits for loop over neighbors */
184 j_index_start = jindex[iidx];
185 j_index_end = jindex[iidx+1];
187 /* Get outer coordinate index */
189 i_coord_offset = DIM*inr;
191 /* Load i particle coords and add shift vector */
192 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
193 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
195 fix0 = _mm_setzero_ps();
196 fiy0 = _mm_setzero_ps();
197 fiz0 = _mm_setzero_ps();
198 fix1 = _mm_setzero_ps();
199 fiy1 = _mm_setzero_ps();
200 fiz1 = _mm_setzero_ps();
201 fix2 = _mm_setzero_ps();
202 fiy2 = _mm_setzero_ps();
203 fiz2 = _mm_setzero_ps();
205 /* Reset potential sums */
206 velecsum = _mm_setzero_ps();
207 vvdwsum = _mm_setzero_ps();
209 /* Start inner kernel loop */
210 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
213 /* Get j neighbor index, and coordinate index */
218 j_coord_offsetA = DIM*jnrA;
219 j_coord_offsetB = DIM*jnrB;
220 j_coord_offsetC = DIM*jnrC;
221 j_coord_offsetD = DIM*jnrD;
223 /* load j atom coordinates */
224 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
225 x+j_coord_offsetC,x+j_coord_offsetD,
226 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
228 /* Calculate displacement vector */
229 dx00 = _mm_sub_ps(ix0,jx0);
230 dy00 = _mm_sub_ps(iy0,jy0);
231 dz00 = _mm_sub_ps(iz0,jz0);
232 dx01 = _mm_sub_ps(ix0,jx1);
233 dy01 = _mm_sub_ps(iy0,jy1);
234 dz01 = _mm_sub_ps(iz0,jz1);
235 dx02 = _mm_sub_ps(ix0,jx2);
236 dy02 = _mm_sub_ps(iy0,jy2);
237 dz02 = _mm_sub_ps(iz0,jz2);
238 dx10 = _mm_sub_ps(ix1,jx0);
239 dy10 = _mm_sub_ps(iy1,jy0);
240 dz10 = _mm_sub_ps(iz1,jz0);
241 dx11 = _mm_sub_ps(ix1,jx1);
242 dy11 = _mm_sub_ps(iy1,jy1);
243 dz11 = _mm_sub_ps(iz1,jz1);
244 dx12 = _mm_sub_ps(ix1,jx2);
245 dy12 = _mm_sub_ps(iy1,jy2);
246 dz12 = _mm_sub_ps(iz1,jz2);
247 dx20 = _mm_sub_ps(ix2,jx0);
248 dy20 = _mm_sub_ps(iy2,jy0);
249 dz20 = _mm_sub_ps(iz2,jz0);
250 dx21 = _mm_sub_ps(ix2,jx1);
251 dy21 = _mm_sub_ps(iy2,jy1);
252 dz21 = _mm_sub_ps(iz2,jz1);
253 dx22 = _mm_sub_ps(ix2,jx2);
254 dy22 = _mm_sub_ps(iy2,jy2);
255 dz22 = _mm_sub_ps(iz2,jz2);
257 /* Calculate squared distance and things based on it */
258 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
259 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
260 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
261 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
262 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
263 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
264 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
265 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
266 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
268 rinv00 = sse41_invsqrt_f(rsq00);
269 rinv01 = sse41_invsqrt_f(rsq01);
270 rinv02 = sse41_invsqrt_f(rsq02);
271 rinv10 = sse41_invsqrt_f(rsq10);
272 rinv11 = sse41_invsqrt_f(rsq11);
273 rinv12 = sse41_invsqrt_f(rsq12);
274 rinv20 = sse41_invsqrt_f(rsq20);
275 rinv21 = sse41_invsqrt_f(rsq21);
276 rinv22 = sse41_invsqrt_f(rsq22);
278 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
279 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
280 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
281 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
282 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
283 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
284 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
285 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
286 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
288 fjx0 = _mm_setzero_ps();
289 fjy0 = _mm_setzero_ps();
290 fjz0 = _mm_setzero_ps();
291 fjx1 = _mm_setzero_ps();
292 fjy1 = _mm_setzero_ps();
293 fjz1 = _mm_setzero_ps();
294 fjx2 = _mm_setzero_ps();
295 fjy2 = _mm_setzero_ps();
296 fjz2 = _mm_setzero_ps();
298 /**************************
299 * CALCULATE INTERACTIONS *
300 **************************/
302 r00 = _mm_mul_ps(rsq00,rinv00);
304 /* Calculate table index by multiplying r with table scale and truncate to integer */
305 rt = _mm_mul_ps(r00,vftabscale);
306 vfitab = _mm_cvttps_epi32(rt);
307 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
308 vfitab = _mm_slli_epi32(vfitab,3);
310 /* COULOMB ELECTROSTATICS */
311 velec = _mm_mul_ps(qq00,rinv00);
312 felec = _mm_mul_ps(velec,rinvsq00);
314 /* CUBIC SPLINE TABLE DISPERSION */
315 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
316 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
317 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
318 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
319 _MM_TRANSPOSE4_PS(Y,F,G,H);
320 Heps = _mm_mul_ps(vfeps,H);
321 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
322 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
323 vvdw6 = _mm_mul_ps(c6_00,VV);
324 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
325 fvdw6 = _mm_mul_ps(c6_00,FF);
327 /* CUBIC SPLINE TABLE REPULSION */
328 vfitab = _mm_add_epi32(vfitab,ifour);
329 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
330 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
331 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
332 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
333 _MM_TRANSPOSE4_PS(Y,F,G,H);
334 Heps = _mm_mul_ps(vfeps,H);
335 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
336 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
337 vvdw12 = _mm_mul_ps(c12_00,VV);
338 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
339 fvdw12 = _mm_mul_ps(c12_00,FF);
340 vvdw = _mm_add_ps(vvdw12,vvdw6);
341 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
343 /* Update potential sum for this i atom from the interaction with this j atom. */
344 velecsum = _mm_add_ps(velecsum,velec);
345 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
347 fscal = _mm_add_ps(felec,fvdw);
349 /* Calculate temporary vectorial force */
350 tx = _mm_mul_ps(fscal,dx00);
351 ty = _mm_mul_ps(fscal,dy00);
352 tz = _mm_mul_ps(fscal,dz00);
354 /* Update vectorial force */
355 fix0 = _mm_add_ps(fix0,tx);
356 fiy0 = _mm_add_ps(fiy0,ty);
357 fiz0 = _mm_add_ps(fiz0,tz);
359 fjx0 = _mm_add_ps(fjx0,tx);
360 fjy0 = _mm_add_ps(fjy0,ty);
361 fjz0 = _mm_add_ps(fjz0,tz);
363 /**************************
364 * CALCULATE INTERACTIONS *
365 **************************/
367 /* COULOMB ELECTROSTATICS */
368 velec = _mm_mul_ps(qq01,rinv01);
369 felec = _mm_mul_ps(velec,rinvsq01);
371 /* Update potential sum for this i atom from the interaction with this j atom. */
372 velecsum = _mm_add_ps(velecsum,velec);
376 /* Calculate temporary vectorial force */
377 tx = _mm_mul_ps(fscal,dx01);
378 ty = _mm_mul_ps(fscal,dy01);
379 tz = _mm_mul_ps(fscal,dz01);
381 /* Update vectorial force */
382 fix0 = _mm_add_ps(fix0,tx);
383 fiy0 = _mm_add_ps(fiy0,ty);
384 fiz0 = _mm_add_ps(fiz0,tz);
386 fjx1 = _mm_add_ps(fjx1,tx);
387 fjy1 = _mm_add_ps(fjy1,ty);
388 fjz1 = _mm_add_ps(fjz1,tz);
390 /**************************
391 * CALCULATE INTERACTIONS *
392 **************************/
394 /* COULOMB ELECTROSTATICS */
395 velec = _mm_mul_ps(qq02,rinv02);
396 felec = _mm_mul_ps(velec,rinvsq02);
398 /* Update potential sum for this i atom from the interaction with this j atom. */
399 velecsum = _mm_add_ps(velecsum,velec);
403 /* Calculate temporary vectorial force */
404 tx = _mm_mul_ps(fscal,dx02);
405 ty = _mm_mul_ps(fscal,dy02);
406 tz = _mm_mul_ps(fscal,dz02);
408 /* Update vectorial force */
409 fix0 = _mm_add_ps(fix0,tx);
410 fiy0 = _mm_add_ps(fiy0,ty);
411 fiz0 = _mm_add_ps(fiz0,tz);
413 fjx2 = _mm_add_ps(fjx2,tx);
414 fjy2 = _mm_add_ps(fjy2,ty);
415 fjz2 = _mm_add_ps(fjz2,tz);
417 /**************************
418 * CALCULATE INTERACTIONS *
419 **************************/
421 /* COULOMB ELECTROSTATICS */
422 velec = _mm_mul_ps(qq10,rinv10);
423 felec = _mm_mul_ps(velec,rinvsq10);
425 /* Update potential sum for this i atom from the interaction with this j atom. */
426 velecsum = _mm_add_ps(velecsum,velec);
430 /* Calculate temporary vectorial force */
431 tx = _mm_mul_ps(fscal,dx10);
432 ty = _mm_mul_ps(fscal,dy10);
433 tz = _mm_mul_ps(fscal,dz10);
435 /* Update vectorial force */
436 fix1 = _mm_add_ps(fix1,tx);
437 fiy1 = _mm_add_ps(fiy1,ty);
438 fiz1 = _mm_add_ps(fiz1,tz);
440 fjx0 = _mm_add_ps(fjx0,tx);
441 fjy0 = _mm_add_ps(fjy0,ty);
442 fjz0 = _mm_add_ps(fjz0,tz);
444 /**************************
445 * CALCULATE INTERACTIONS *
446 **************************/
448 /* COULOMB ELECTROSTATICS */
449 velec = _mm_mul_ps(qq11,rinv11);
450 felec = _mm_mul_ps(velec,rinvsq11);
452 /* Update potential sum for this i atom from the interaction with this j atom. */
453 velecsum = _mm_add_ps(velecsum,velec);
457 /* Calculate temporary vectorial force */
458 tx = _mm_mul_ps(fscal,dx11);
459 ty = _mm_mul_ps(fscal,dy11);
460 tz = _mm_mul_ps(fscal,dz11);
462 /* Update vectorial force */
463 fix1 = _mm_add_ps(fix1,tx);
464 fiy1 = _mm_add_ps(fiy1,ty);
465 fiz1 = _mm_add_ps(fiz1,tz);
467 fjx1 = _mm_add_ps(fjx1,tx);
468 fjy1 = _mm_add_ps(fjy1,ty);
469 fjz1 = _mm_add_ps(fjz1,tz);
471 /**************************
472 * CALCULATE INTERACTIONS *
473 **************************/
475 /* COULOMB ELECTROSTATICS */
476 velec = _mm_mul_ps(qq12,rinv12);
477 felec = _mm_mul_ps(velec,rinvsq12);
479 /* Update potential sum for this i atom from the interaction with this j atom. */
480 velecsum = _mm_add_ps(velecsum,velec);
484 /* Calculate temporary vectorial force */
485 tx = _mm_mul_ps(fscal,dx12);
486 ty = _mm_mul_ps(fscal,dy12);
487 tz = _mm_mul_ps(fscal,dz12);
489 /* Update vectorial force */
490 fix1 = _mm_add_ps(fix1,tx);
491 fiy1 = _mm_add_ps(fiy1,ty);
492 fiz1 = _mm_add_ps(fiz1,tz);
494 fjx2 = _mm_add_ps(fjx2,tx);
495 fjy2 = _mm_add_ps(fjy2,ty);
496 fjz2 = _mm_add_ps(fjz2,tz);
498 /**************************
499 * CALCULATE INTERACTIONS *
500 **************************/
502 /* COULOMB ELECTROSTATICS */
503 velec = _mm_mul_ps(qq20,rinv20);
504 felec = _mm_mul_ps(velec,rinvsq20);
506 /* Update potential sum for this i atom from the interaction with this j atom. */
507 velecsum = _mm_add_ps(velecsum,velec);
511 /* Calculate temporary vectorial force */
512 tx = _mm_mul_ps(fscal,dx20);
513 ty = _mm_mul_ps(fscal,dy20);
514 tz = _mm_mul_ps(fscal,dz20);
516 /* Update vectorial force */
517 fix2 = _mm_add_ps(fix2,tx);
518 fiy2 = _mm_add_ps(fiy2,ty);
519 fiz2 = _mm_add_ps(fiz2,tz);
521 fjx0 = _mm_add_ps(fjx0,tx);
522 fjy0 = _mm_add_ps(fjy0,ty);
523 fjz0 = _mm_add_ps(fjz0,tz);
525 /**************************
526 * CALCULATE INTERACTIONS *
527 **************************/
529 /* COULOMB ELECTROSTATICS */
530 velec = _mm_mul_ps(qq21,rinv21);
531 felec = _mm_mul_ps(velec,rinvsq21);
533 /* Update potential sum for this i atom from the interaction with this j atom. */
534 velecsum = _mm_add_ps(velecsum,velec);
538 /* Calculate temporary vectorial force */
539 tx = _mm_mul_ps(fscal,dx21);
540 ty = _mm_mul_ps(fscal,dy21);
541 tz = _mm_mul_ps(fscal,dz21);
543 /* Update vectorial force */
544 fix2 = _mm_add_ps(fix2,tx);
545 fiy2 = _mm_add_ps(fiy2,ty);
546 fiz2 = _mm_add_ps(fiz2,tz);
548 fjx1 = _mm_add_ps(fjx1,tx);
549 fjy1 = _mm_add_ps(fjy1,ty);
550 fjz1 = _mm_add_ps(fjz1,tz);
552 /**************************
553 * CALCULATE INTERACTIONS *
554 **************************/
556 /* COULOMB ELECTROSTATICS */
557 velec = _mm_mul_ps(qq22,rinv22);
558 felec = _mm_mul_ps(velec,rinvsq22);
560 /* Update potential sum for this i atom from the interaction with this j atom. */
561 velecsum = _mm_add_ps(velecsum,velec);
565 /* Calculate temporary vectorial force */
566 tx = _mm_mul_ps(fscal,dx22);
567 ty = _mm_mul_ps(fscal,dy22);
568 tz = _mm_mul_ps(fscal,dz22);
570 /* Update vectorial force */
571 fix2 = _mm_add_ps(fix2,tx);
572 fiy2 = _mm_add_ps(fiy2,ty);
573 fiz2 = _mm_add_ps(fiz2,tz);
575 fjx2 = _mm_add_ps(fjx2,tx);
576 fjy2 = _mm_add_ps(fjy2,ty);
577 fjz2 = _mm_add_ps(fjz2,tz);
579 fjptrA = f+j_coord_offsetA;
580 fjptrB = f+j_coord_offsetB;
581 fjptrC = f+j_coord_offsetC;
582 fjptrD = f+j_coord_offsetD;
584 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
585 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
587 /* Inner loop uses 287 flops */
593 /* Get j neighbor index, and coordinate index */
594 jnrlistA = jjnr[jidx];
595 jnrlistB = jjnr[jidx+1];
596 jnrlistC = jjnr[jidx+2];
597 jnrlistD = jjnr[jidx+3];
598 /* Sign of each element will be negative for non-real atoms.
599 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
600 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
602 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
603 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
604 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
605 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
606 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
607 j_coord_offsetA = DIM*jnrA;
608 j_coord_offsetB = DIM*jnrB;
609 j_coord_offsetC = DIM*jnrC;
610 j_coord_offsetD = DIM*jnrD;
612 /* load j atom coordinates */
613 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
614 x+j_coord_offsetC,x+j_coord_offsetD,
615 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
617 /* Calculate displacement vector */
618 dx00 = _mm_sub_ps(ix0,jx0);
619 dy00 = _mm_sub_ps(iy0,jy0);
620 dz00 = _mm_sub_ps(iz0,jz0);
621 dx01 = _mm_sub_ps(ix0,jx1);
622 dy01 = _mm_sub_ps(iy0,jy1);
623 dz01 = _mm_sub_ps(iz0,jz1);
624 dx02 = _mm_sub_ps(ix0,jx2);
625 dy02 = _mm_sub_ps(iy0,jy2);
626 dz02 = _mm_sub_ps(iz0,jz2);
627 dx10 = _mm_sub_ps(ix1,jx0);
628 dy10 = _mm_sub_ps(iy1,jy0);
629 dz10 = _mm_sub_ps(iz1,jz0);
630 dx11 = _mm_sub_ps(ix1,jx1);
631 dy11 = _mm_sub_ps(iy1,jy1);
632 dz11 = _mm_sub_ps(iz1,jz1);
633 dx12 = _mm_sub_ps(ix1,jx2);
634 dy12 = _mm_sub_ps(iy1,jy2);
635 dz12 = _mm_sub_ps(iz1,jz2);
636 dx20 = _mm_sub_ps(ix2,jx0);
637 dy20 = _mm_sub_ps(iy2,jy0);
638 dz20 = _mm_sub_ps(iz2,jz0);
639 dx21 = _mm_sub_ps(ix2,jx1);
640 dy21 = _mm_sub_ps(iy2,jy1);
641 dz21 = _mm_sub_ps(iz2,jz1);
642 dx22 = _mm_sub_ps(ix2,jx2);
643 dy22 = _mm_sub_ps(iy2,jy2);
644 dz22 = _mm_sub_ps(iz2,jz2);
646 /* Calculate squared distance and things based on it */
647 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
648 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
649 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
650 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
651 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
652 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
653 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
654 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
655 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
657 rinv00 = sse41_invsqrt_f(rsq00);
658 rinv01 = sse41_invsqrt_f(rsq01);
659 rinv02 = sse41_invsqrt_f(rsq02);
660 rinv10 = sse41_invsqrt_f(rsq10);
661 rinv11 = sse41_invsqrt_f(rsq11);
662 rinv12 = sse41_invsqrt_f(rsq12);
663 rinv20 = sse41_invsqrt_f(rsq20);
664 rinv21 = sse41_invsqrt_f(rsq21);
665 rinv22 = sse41_invsqrt_f(rsq22);
667 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
668 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
669 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
670 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
671 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
672 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
673 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
674 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
675 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
677 fjx0 = _mm_setzero_ps();
678 fjy0 = _mm_setzero_ps();
679 fjz0 = _mm_setzero_ps();
680 fjx1 = _mm_setzero_ps();
681 fjy1 = _mm_setzero_ps();
682 fjz1 = _mm_setzero_ps();
683 fjx2 = _mm_setzero_ps();
684 fjy2 = _mm_setzero_ps();
685 fjz2 = _mm_setzero_ps();
687 /**************************
688 * CALCULATE INTERACTIONS *
689 **************************/
691 r00 = _mm_mul_ps(rsq00,rinv00);
692 r00 = _mm_andnot_ps(dummy_mask,r00);
694 /* Calculate table index by multiplying r with table scale and truncate to integer */
695 rt = _mm_mul_ps(r00,vftabscale);
696 vfitab = _mm_cvttps_epi32(rt);
697 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
698 vfitab = _mm_slli_epi32(vfitab,3);
700 /* COULOMB ELECTROSTATICS */
701 velec = _mm_mul_ps(qq00,rinv00);
702 felec = _mm_mul_ps(velec,rinvsq00);
704 /* CUBIC SPLINE TABLE DISPERSION */
705 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
706 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
707 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
708 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
709 _MM_TRANSPOSE4_PS(Y,F,G,H);
710 Heps = _mm_mul_ps(vfeps,H);
711 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
712 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
713 vvdw6 = _mm_mul_ps(c6_00,VV);
714 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
715 fvdw6 = _mm_mul_ps(c6_00,FF);
717 /* CUBIC SPLINE TABLE REPULSION */
718 vfitab = _mm_add_epi32(vfitab,ifour);
719 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
720 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
721 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
722 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
723 _MM_TRANSPOSE4_PS(Y,F,G,H);
724 Heps = _mm_mul_ps(vfeps,H);
725 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
726 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
727 vvdw12 = _mm_mul_ps(c12_00,VV);
728 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
729 fvdw12 = _mm_mul_ps(c12_00,FF);
730 vvdw = _mm_add_ps(vvdw12,vvdw6);
731 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
733 /* Update potential sum for this i atom from the interaction with this j atom. */
734 velec = _mm_andnot_ps(dummy_mask,velec);
735 velecsum = _mm_add_ps(velecsum,velec);
736 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
737 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
739 fscal = _mm_add_ps(felec,fvdw);
741 fscal = _mm_andnot_ps(dummy_mask,fscal);
743 /* Calculate temporary vectorial force */
744 tx = _mm_mul_ps(fscal,dx00);
745 ty = _mm_mul_ps(fscal,dy00);
746 tz = _mm_mul_ps(fscal,dz00);
748 /* Update vectorial force */
749 fix0 = _mm_add_ps(fix0,tx);
750 fiy0 = _mm_add_ps(fiy0,ty);
751 fiz0 = _mm_add_ps(fiz0,tz);
753 fjx0 = _mm_add_ps(fjx0,tx);
754 fjy0 = _mm_add_ps(fjy0,ty);
755 fjz0 = _mm_add_ps(fjz0,tz);
757 /**************************
758 * CALCULATE INTERACTIONS *
759 **************************/
761 /* COULOMB ELECTROSTATICS */
762 velec = _mm_mul_ps(qq01,rinv01);
763 felec = _mm_mul_ps(velec,rinvsq01);
765 /* Update potential sum for this i atom from the interaction with this j atom. */
766 velec = _mm_andnot_ps(dummy_mask,velec);
767 velecsum = _mm_add_ps(velecsum,velec);
771 fscal = _mm_andnot_ps(dummy_mask,fscal);
773 /* Calculate temporary vectorial force */
774 tx = _mm_mul_ps(fscal,dx01);
775 ty = _mm_mul_ps(fscal,dy01);
776 tz = _mm_mul_ps(fscal,dz01);
778 /* Update vectorial force */
779 fix0 = _mm_add_ps(fix0,tx);
780 fiy0 = _mm_add_ps(fiy0,ty);
781 fiz0 = _mm_add_ps(fiz0,tz);
783 fjx1 = _mm_add_ps(fjx1,tx);
784 fjy1 = _mm_add_ps(fjy1,ty);
785 fjz1 = _mm_add_ps(fjz1,tz);
787 /**************************
788 * CALCULATE INTERACTIONS *
789 **************************/
791 /* COULOMB ELECTROSTATICS */
792 velec = _mm_mul_ps(qq02,rinv02);
793 felec = _mm_mul_ps(velec,rinvsq02);
795 /* Update potential sum for this i atom from the interaction with this j atom. */
796 velec = _mm_andnot_ps(dummy_mask,velec);
797 velecsum = _mm_add_ps(velecsum,velec);
801 fscal = _mm_andnot_ps(dummy_mask,fscal);
803 /* Calculate temporary vectorial force */
804 tx = _mm_mul_ps(fscal,dx02);
805 ty = _mm_mul_ps(fscal,dy02);
806 tz = _mm_mul_ps(fscal,dz02);
808 /* Update vectorial force */
809 fix0 = _mm_add_ps(fix0,tx);
810 fiy0 = _mm_add_ps(fiy0,ty);
811 fiz0 = _mm_add_ps(fiz0,tz);
813 fjx2 = _mm_add_ps(fjx2,tx);
814 fjy2 = _mm_add_ps(fjy2,ty);
815 fjz2 = _mm_add_ps(fjz2,tz);
817 /**************************
818 * CALCULATE INTERACTIONS *
819 **************************/
821 /* COULOMB ELECTROSTATICS */
822 velec = _mm_mul_ps(qq10,rinv10);
823 felec = _mm_mul_ps(velec,rinvsq10);
825 /* Update potential sum for this i atom from the interaction with this j atom. */
826 velec = _mm_andnot_ps(dummy_mask,velec);
827 velecsum = _mm_add_ps(velecsum,velec);
831 fscal = _mm_andnot_ps(dummy_mask,fscal);
833 /* Calculate temporary vectorial force */
834 tx = _mm_mul_ps(fscal,dx10);
835 ty = _mm_mul_ps(fscal,dy10);
836 tz = _mm_mul_ps(fscal,dz10);
838 /* Update vectorial force */
839 fix1 = _mm_add_ps(fix1,tx);
840 fiy1 = _mm_add_ps(fiy1,ty);
841 fiz1 = _mm_add_ps(fiz1,tz);
843 fjx0 = _mm_add_ps(fjx0,tx);
844 fjy0 = _mm_add_ps(fjy0,ty);
845 fjz0 = _mm_add_ps(fjz0,tz);
847 /**************************
848 * CALCULATE INTERACTIONS *
849 **************************/
851 /* COULOMB ELECTROSTATICS */
852 velec = _mm_mul_ps(qq11,rinv11);
853 felec = _mm_mul_ps(velec,rinvsq11);
855 /* Update potential sum for this i atom from the interaction with this j atom. */
856 velec = _mm_andnot_ps(dummy_mask,velec);
857 velecsum = _mm_add_ps(velecsum,velec);
861 fscal = _mm_andnot_ps(dummy_mask,fscal);
863 /* Calculate temporary vectorial force */
864 tx = _mm_mul_ps(fscal,dx11);
865 ty = _mm_mul_ps(fscal,dy11);
866 tz = _mm_mul_ps(fscal,dz11);
868 /* Update vectorial force */
869 fix1 = _mm_add_ps(fix1,tx);
870 fiy1 = _mm_add_ps(fiy1,ty);
871 fiz1 = _mm_add_ps(fiz1,tz);
873 fjx1 = _mm_add_ps(fjx1,tx);
874 fjy1 = _mm_add_ps(fjy1,ty);
875 fjz1 = _mm_add_ps(fjz1,tz);
877 /**************************
878 * CALCULATE INTERACTIONS *
879 **************************/
881 /* COULOMB ELECTROSTATICS */
882 velec = _mm_mul_ps(qq12,rinv12);
883 felec = _mm_mul_ps(velec,rinvsq12);
885 /* Update potential sum for this i atom from the interaction with this j atom. */
886 velec = _mm_andnot_ps(dummy_mask,velec);
887 velecsum = _mm_add_ps(velecsum,velec);
891 fscal = _mm_andnot_ps(dummy_mask,fscal);
893 /* Calculate temporary vectorial force */
894 tx = _mm_mul_ps(fscal,dx12);
895 ty = _mm_mul_ps(fscal,dy12);
896 tz = _mm_mul_ps(fscal,dz12);
898 /* Update vectorial force */
899 fix1 = _mm_add_ps(fix1,tx);
900 fiy1 = _mm_add_ps(fiy1,ty);
901 fiz1 = _mm_add_ps(fiz1,tz);
903 fjx2 = _mm_add_ps(fjx2,tx);
904 fjy2 = _mm_add_ps(fjy2,ty);
905 fjz2 = _mm_add_ps(fjz2,tz);
907 /**************************
908 * CALCULATE INTERACTIONS *
909 **************************/
911 /* COULOMB ELECTROSTATICS */
912 velec = _mm_mul_ps(qq20,rinv20);
913 felec = _mm_mul_ps(velec,rinvsq20);
915 /* Update potential sum for this i atom from the interaction with this j atom. */
916 velec = _mm_andnot_ps(dummy_mask,velec);
917 velecsum = _mm_add_ps(velecsum,velec);
921 fscal = _mm_andnot_ps(dummy_mask,fscal);
923 /* Calculate temporary vectorial force */
924 tx = _mm_mul_ps(fscal,dx20);
925 ty = _mm_mul_ps(fscal,dy20);
926 tz = _mm_mul_ps(fscal,dz20);
928 /* Update vectorial force */
929 fix2 = _mm_add_ps(fix2,tx);
930 fiy2 = _mm_add_ps(fiy2,ty);
931 fiz2 = _mm_add_ps(fiz2,tz);
933 fjx0 = _mm_add_ps(fjx0,tx);
934 fjy0 = _mm_add_ps(fjy0,ty);
935 fjz0 = _mm_add_ps(fjz0,tz);
937 /**************************
938 * CALCULATE INTERACTIONS *
939 **************************/
941 /* COULOMB ELECTROSTATICS */
942 velec = _mm_mul_ps(qq21,rinv21);
943 felec = _mm_mul_ps(velec,rinvsq21);
945 /* Update potential sum for this i atom from the interaction with this j atom. */
946 velec = _mm_andnot_ps(dummy_mask,velec);
947 velecsum = _mm_add_ps(velecsum,velec);
951 fscal = _mm_andnot_ps(dummy_mask,fscal);
953 /* Calculate temporary vectorial force */
954 tx = _mm_mul_ps(fscal,dx21);
955 ty = _mm_mul_ps(fscal,dy21);
956 tz = _mm_mul_ps(fscal,dz21);
958 /* Update vectorial force */
959 fix2 = _mm_add_ps(fix2,tx);
960 fiy2 = _mm_add_ps(fiy2,ty);
961 fiz2 = _mm_add_ps(fiz2,tz);
963 fjx1 = _mm_add_ps(fjx1,tx);
964 fjy1 = _mm_add_ps(fjy1,ty);
965 fjz1 = _mm_add_ps(fjz1,tz);
967 /**************************
968 * CALCULATE INTERACTIONS *
969 **************************/
971 /* COULOMB ELECTROSTATICS */
972 velec = _mm_mul_ps(qq22,rinv22);
973 felec = _mm_mul_ps(velec,rinvsq22);
975 /* Update potential sum for this i atom from the interaction with this j atom. */
976 velec = _mm_andnot_ps(dummy_mask,velec);
977 velecsum = _mm_add_ps(velecsum,velec);
981 fscal = _mm_andnot_ps(dummy_mask,fscal);
983 /* Calculate temporary vectorial force */
984 tx = _mm_mul_ps(fscal,dx22);
985 ty = _mm_mul_ps(fscal,dy22);
986 tz = _mm_mul_ps(fscal,dz22);
988 /* Update vectorial force */
989 fix2 = _mm_add_ps(fix2,tx);
990 fiy2 = _mm_add_ps(fiy2,ty);
991 fiz2 = _mm_add_ps(fiz2,tz);
993 fjx2 = _mm_add_ps(fjx2,tx);
994 fjy2 = _mm_add_ps(fjy2,ty);
995 fjz2 = _mm_add_ps(fjz2,tz);
997 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
998 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
999 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1000 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1002 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1003 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1005 /* Inner loop uses 288 flops */
1008 /* End of innermost loop */
1010 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1011 f+i_coord_offset,fshift+i_shift_offset);
1014 /* Update potential energies */
1015 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
1016 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
1018 /* Increment number of inner iterations */
1019 inneriter += j_index_end - j_index_start;
1021 /* Outer loop uses 20 flops */
1024 /* Increment number of outer iterations */
1027 /* Update outer/inner flops */
1029 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_VF,outeriter*20 + inneriter*288);
1032 * Gromacs nonbonded kernel: nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_F_sse4_1_single
1033 * Electrostatics interaction: Coulomb
1034 * VdW interaction: CubicSplineTable
1035 * Geometry: Water3-Water3
1036 * Calculate force/pot: Force
1039 nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_F_sse4_1_single
1040 (t_nblist * gmx_restrict nlist,
1041 rvec * gmx_restrict xx,
1042 rvec * gmx_restrict ff,
1043 struct t_forcerec * gmx_restrict fr,
1044 t_mdatoms * gmx_restrict mdatoms,
1045 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
1046 t_nrnb * gmx_restrict nrnb)
1048 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
1049 * just 0 for non-waters.
1050 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
1051 * jnr indices corresponding to data put in the four positions in the SIMD register.
1053 int i_shift_offset,i_coord_offset,outeriter,inneriter;
1054 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
1055 int jnrA,jnrB,jnrC,jnrD;
1056 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
1057 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
1058 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
1059 real rcutoff_scalar;
1060 real *shiftvec,*fshift,*x,*f;
1061 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
1062 real scratch[4*DIM];
1063 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
1065 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
1067 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
1069 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
1070 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
1071 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
1072 int vdwjidx1A,vdwjidx1B,vdwjidx1C,vdwjidx1D;
1073 __m128 jx1,jy1,jz1,fjx1,fjy1,fjz1,jq1,isaj1;
1074 int vdwjidx2A,vdwjidx2B,vdwjidx2C,vdwjidx2D;
1075 __m128 jx2,jy2,jz2,fjx2,fjy2,fjz2,jq2,isaj2;
1076 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
1077 __m128 dx01,dy01,dz01,rsq01,rinv01,rinvsq01,r01,qq01,c6_01,c12_01;
1078 __m128 dx02,dy02,dz02,rsq02,rinv02,rinvsq02,r02,qq02,c6_02,c12_02;
1079 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
1080 __m128 dx11,dy11,dz11,rsq11,rinv11,rinvsq11,r11,qq11,c6_11,c12_11;
1081 __m128 dx12,dy12,dz12,rsq12,rinv12,rinvsq12,r12,qq12,c6_12,c12_12;
1082 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
1083 __m128 dx21,dy21,dz21,rsq21,rinv21,rinvsq21,r21,qq21,c6_21,c12_21;
1084 __m128 dx22,dy22,dz22,rsq22,rinv22,rinvsq22,r22,qq22,c6_22,c12_22;
1085 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
1088 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
1091 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
1092 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
1094 __m128i ifour = _mm_set1_epi32(4);
1095 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
1097 __m128 dummy_mask,cutoff_mask;
1098 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
1099 __m128 one = _mm_set1_ps(1.0);
1100 __m128 two = _mm_set1_ps(2.0);
1106 jindex = nlist->jindex;
1108 shiftidx = nlist->shift;
1110 shiftvec = fr->shift_vec[0];
1111 fshift = fr->fshift[0];
1112 facel = _mm_set1_ps(fr->ic->epsfac);
1113 charge = mdatoms->chargeA;
1114 nvdwtype = fr->ntype;
1115 vdwparam = fr->nbfp;
1116 vdwtype = mdatoms->typeA;
1118 vftab = kernel_data->table_vdw->data;
1119 vftabscale = _mm_set1_ps(kernel_data->table_vdw->scale);
1121 /* Setup water-specific parameters */
1122 inr = nlist->iinr[0];
1123 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
1124 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
1125 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
1126 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
1128 jq0 = _mm_set1_ps(charge[inr+0]);
1129 jq1 = _mm_set1_ps(charge[inr+1]);
1130 jq2 = _mm_set1_ps(charge[inr+2]);
1131 vdwjidx0A = 2*vdwtype[inr+0];
1132 qq00 = _mm_mul_ps(iq0,jq0);
1133 c6_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A]);
1134 c12_00 = _mm_set1_ps(vdwparam[vdwioffset0+vdwjidx0A+1]);
1135 qq01 = _mm_mul_ps(iq0,jq1);
1136 qq02 = _mm_mul_ps(iq0,jq2);
1137 qq10 = _mm_mul_ps(iq1,jq0);
1138 qq11 = _mm_mul_ps(iq1,jq1);
1139 qq12 = _mm_mul_ps(iq1,jq2);
1140 qq20 = _mm_mul_ps(iq2,jq0);
1141 qq21 = _mm_mul_ps(iq2,jq1);
1142 qq22 = _mm_mul_ps(iq2,jq2);
1144 /* Avoid stupid compiler warnings */
1145 jnrA = jnrB = jnrC = jnrD = 0;
1146 j_coord_offsetA = 0;
1147 j_coord_offsetB = 0;
1148 j_coord_offsetC = 0;
1149 j_coord_offsetD = 0;
1154 for(iidx=0;iidx<4*DIM;iidx++)
1156 scratch[iidx] = 0.0;
1159 /* Start outer loop over neighborlists */
1160 for(iidx=0; iidx<nri; iidx++)
1162 /* Load shift vector for this list */
1163 i_shift_offset = DIM*shiftidx[iidx];
1165 /* Load limits for loop over neighbors */
1166 j_index_start = jindex[iidx];
1167 j_index_end = jindex[iidx+1];
1169 /* Get outer coordinate index */
1171 i_coord_offset = DIM*inr;
1173 /* Load i particle coords and add shift vector */
1174 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
1175 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
1177 fix0 = _mm_setzero_ps();
1178 fiy0 = _mm_setzero_ps();
1179 fiz0 = _mm_setzero_ps();
1180 fix1 = _mm_setzero_ps();
1181 fiy1 = _mm_setzero_ps();
1182 fiz1 = _mm_setzero_ps();
1183 fix2 = _mm_setzero_ps();
1184 fiy2 = _mm_setzero_ps();
1185 fiz2 = _mm_setzero_ps();
1187 /* Start inner kernel loop */
1188 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
1191 /* Get j neighbor index, and coordinate index */
1193 jnrB = jjnr[jidx+1];
1194 jnrC = jjnr[jidx+2];
1195 jnrD = jjnr[jidx+3];
1196 j_coord_offsetA = DIM*jnrA;
1197 j_coord_offsetB = DIM*jnrB;
1198 j_coord_offsetC = DIM*jnrC;
1199 j_coord_offsetD = DIM*jnrD;
1201 /* load j atom coordinates */
1202 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1203 x+j_coord_offsetC,x+j_coord_offsetD,
1204 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1206 /* Calculate displacement vector */
1207 dx00 = _mm_sub_ps(ix0,jx0);
1208 dy00 = _mm_sub_ps(iy0,jy0);
1209 dz00 = _mm_sub_ps(iz0,jz0);
1210 dx01 = _mm_sub_ps(ix0,jx1);
1211 dy01 = _mm_sub_ps(iy0,jy1);
1212 dz01 = _mm_sub_ps(iz0,jz1);
1213 dx02 = _mm_sub_ps(ix0,jx2);
1214 dy02 = _mm_sub_ps(iy0,jy2);
1215 dz02 = _mm_sub_ps(iz0,jz2);
1216 dx10 = _mm_sub_ps(ix1,jx0);
1217 dy10 = _mm_sub_ps(iy1,jy0);
1218 dz10 = _mm_sub_ps(iz1,jz0);
1219 dx11 = _mm_sub_ps(ix1,jx1);
1220 dy11 = _mm_sub_ps(iy1,jy1);
1221 dz11 = _mm_sub_ps(iz1,jz1);
1222 dx12 = _mm_sub_ps(ix1,jx2);
1223 dy12 = _mm_sub_ps(iy1,jy2);
1224 dz12 = _mm_sub_ps(iz1,jz2);
1225 dx20 = _mm_sub_ps(ix2,jx0);
1226 dy20 = _mm_sub_ps(iy2,jy0);
1227 dz20 = _mm_sub_ps(iz2,jz0);
1228 dx21 = _mm_sub_ps(ix2,jx1);
1229 dy21 = _mm_sub_ps(iy2,jy1);
1230 dz21 = _mm_sub_ps(iz2,jz1);
1231 dx22 = _mm_sub_ps(ix2,jx2);
1232 dy22 = _mm_sub_ps(iy2,jy2);
1233 dz22 = _mm_sub_ps(iz2,jz2);
1235 /* Calculate squared distance and things based on it */
1236 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1237 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1238 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1239 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1240 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1241 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1242 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1243 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1244 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1246 rinv00 = sse41_invsqrt_f(rsq00);
1247 rinv01 = sse41_invsqrt_f(rsq01);
1248 rinv02 = sse41_invsqrt_f(rsq02);
1249 rinv10 = sse41_invsqrt_f(rsq10);
1250 rinv11 = sse41_invsqrt_f(rsq11);
1251 rinv12 = sse41_invsqrt_f(rsq12);
1252 rinv20 = sse41_invsqrt_f(rsq20);
1253 rinv21 = sse41_invsqrt_f(rsq21);
1254 rinv22 = sse41_invsqrt_f(rsq22);
1256 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1257 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1258 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1259 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1260 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1261 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1262 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1263 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1264 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1266 fjx0 = _mm_setzero_ps();
1267 fjy0 = _mm_setzero_ps();
1268 fjz0 = _mm_setzero_ps();
1269 fjx1 = _mm_setzero_ps();
1270 fjy1 = _mm_setzero_ps();
1271 fjz1 = _mm_setzero_ps();
1272 fjx2 = _mm_setzero_ps();
1273 fjy2 = _mm_setzero_ps();
1274 fjz2 = _mm_setzero_ps();
1276 /**************************
1277 * CALCULATE INTERACTIONS *
1278 **************************/
1280 r00 = _mm_mul_ps(rsq00,rinv00);
1282 /* Calculate table index by multiplying r with table scale and truncate to integer */
1283 rt = _mm_mul_ps(r00,vftabscale);
1284 vfitab = _mm_cvttps_epi32(rt);
1285 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1286 vfitab = _mm_slli_epi32(vfitab,3);
1288 /* COULOMB ELECTROSTATICS */
1289 velec = _mm_mul_ps(qq00,rinv00);
1290 felec = _mm_mul_ps(velec,rinvsq00);
1292 /* CUBIC SPLINE TABLE DISPERSION */
1293 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1294 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1295 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1296 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1297 _MM_TRANSPOSE4_PS(Y,F,G,H);
1298 Heps = _mm_mul_ps(vfeps,H);
1299 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1300 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1301 fvdw6 = _mm_mul_ps(c6_00,FF);
1303 /* CUBIC SPLINE TABLE REPULSION */
1304 vfitab = _mm_add_epi32(vfitab,ifour);
1305 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1306 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1307 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1308 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1309 _MM_TRANSPOSE4_PS(Y,F,G,H);
1310 Heps = _mm_mul_ps(vfeps,H);
1311 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1312 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1313 fvdw12 = _mm_mul_ps(c12_00,FF);
1314 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1316 fscal = _mm_add_ps(felec,fvdw);
1318 /* Calculate temporary vectorial force */
1319 tx = _mm_mul_ps(fscal,dx00);
1320 ty = _mm_mul_ps(fscal,dy00);
1321 tz = _mm_mul_ps(fscal,dz00);
1323 /* Update vectorial force */
1324 fix0 = _mm_add_ps(fix0,tx);
1325 fiy0 = _mm_add_ps(fiy0,ty);
1326 fiz0 = _mm_add_ps(fiz0,tz);
1328 fjx0 = _mm_add_ps(fjx0,tx);
1329 fjy0 = _mm_add_ps(fjy0,ty);
1330 fjz0 = _mm_add_ps(fjz0,tz);
1332 /**************************
1333 * CALCULATE INTERACTIONS *
1334 **************************/
1336 /* COULOMB ELECTROSTATICS */
1337 velec = _mm_mul_ps(qq01,rinv01);
1338 felec = _mm_mul_ps(velec,rinvsq01);
1342 /* Calculate temporary vectorial force */
1343 tx = _mm_mul_ps(fscal,dx01);
1344 ty = _mm_mul_ps(fscal,dy01);
1345 tz = _mm_mul_ps(fscal,dz01);
1347 /* Update vectorial force */
1348 fix0 = _mm_add_ps(fix0,tx);
1349 fiy0 = _mm_add_ps(fiy0,ty);
1350 fiz0 = _mm_add_ps(fiz0,tz);
1352 fjx1 = _mm_add_ps(fjx1,tx);
1353 fjy1 = _mm_add_ps(fjy1,ty);
1354 fjz1 = _mm_add_ps(fjz1,tz);
1356 /**************************
1357 * CALCULATE INTERACTIONS *
1358 **************************/
1360 /* COULOMB ELECTROSTATICS */
1361 velec = _mm_mul_ps(qq02,rinv02);
1362 felec = _mm_mul_ps(velec,rinvsq02);
1366 /* Calculate temporary vectorial force */
1367 tx = _mm_mul_ps(fscal,dx02);
1368 ty = _mm_mul_ps(fscal,dy02);
1369 tz = _mm_mul_ps(fscal,dz02);
1371 /* Update vectorial force */
1372 fix0 = _mm_add_ps(fix0,tx);
1373 fiy0 = _mm_add_ps(fiy0,ty);
1374 fiz0 = _mm_add_ps(fiz0,tz);
1376 fjx2 = _mm_add_ps(fjx2,tx);
1377 fjy2 = _mm_add_ps(fjy2,ty);
1378 fjz2 = _mm_add_ps(fjz2,tz);
1380 /**************************
1381 * CALCULATE INTERACTIONS *
1382 **************************/
1384 /* COULOMB ELECTROSTATICS */
1385 velec = _mm_mul_ps(qq10,rinv10);
1386 felec = _mm_mul_ps(velec,rinvsq10);
1390 /* Calculate temporary vectorial force */
1391 tx = _mm_mul_ps(fscal,dx10);
1392 ty = _mm_mul_ps(fscal,dy10);
1393 tz = _mm_mul_ps(fscal,dz10);
1395 /* Update vectorial force */
1396 fix1 = _mm_add_ps(fix1,tx);
1397 fiy1 = _mm_add_ps(fiy1,ty);
1398 fiz1 = _mm_add_ps(fiz1,tz);
1400 fjx0 = _mm_add_ps(fjx0,tx);
1401 fjy0 = _mm_add_ps(fjy0,ty);
1402 fjz0 = _mm_add_ps(fjz0,tz);
1404 /**************************
1405 * CALCULATE INTERACTIONS *
1406 **************************/
1408 /* COULOMB ELECTROSTATICS */
1409 velec = _mm_mul_ps(qq11,rinv11);
1410 felec = _mm_mul_ps(velec,rinvsq11);
1414 /* Calculate temporary vectorial force */
1415 tx = _mm_mul_ps(fscal,dx11);
1416 ty = _mm_mul_ps(fscal,dy11);
1417 tz = _mm_mul_ps(fscal,dz11);
1419 /* Update vectorial force */
1420 fix1 = _mm_add_ps(fix1,tx);
1421 fiy1 = _mm_add_ps(fiy1,ty);
1422 fiz1 = _mm_add_ps(fiz1,tz);
1424 fjx1 = _mm_add_ps(fjx1,tx);
1425 fjy1 = _mm_add_ps(fjy1,ty);
1426 fjz1 = _mm_add_ps(fjz1,tz);
1428 /**************************
1429 * CALCULATE INTERACTIONS *
1430 **************************/
1432 /* COULOMB ELECTROSTATICS */
1433 velec = _mm_mul_ps(qq12,rinv12);
1434 felec = _mm_mul_ps(velec,rinvsq12);
1438 /* Calculate temporary vectorial force */
1439 tx = _mm_mul_ps(fscal,dx12);
1440 ty = _mm_mul_ps(fscal,dy12);
1441 tz = _mm_mul_ps(fscal,dz12);
1443 /* Update vectorial force */
1444 fix1 = _mm_add_ps(fix1,tx);
1445 fiy1 = _mm_add_ps(fiy1,ty);
1446 fiz1 = _mm_add_ps(fiz1,tz);
1448 fjx2 = _mm_add_ps(fjx2,tx);
1449 fjy2 = _mm_add_ps(fjy2,ty);
1450 fjz2 = _mm_add_ps(fjz2,tz);
1452 /**************************
1453 * CALCULATE INTERACTIONS *
1454 **************************/
1456 /* COULOMB ELECTROSTATICS */
1457 velec = _mm_mul_ps(qq20,rinv20);
1458 felec = _mm_mul_ps(velec,rinvsq20);
1462 /* Calculate temporary vectorial force */
1463 tx = _mm_mul_ps(fscal,dx20);
1464 ty = _mm_mul_ps(fscal,dy20);
1465 tz = _mm_mul_ps(fscal,dz20);
1467 /* Update vectorial force */
1468 fix2 = _mm_add_ps(fix2,tx);
1469 fiy2 = _mm_add_ps(fiy2,ty);
1470 fiz2 = _mm_add_ps(fiz2,tz);
1472 fjx0 = _mm_add_ps(fjx0,tx);
1473 fjy0 = _mm_add_ps(fjy0,ty);
1474 fjz0 = _mm_add_ps(fjz0,tz);
1476 /**************************
1477 * CALCULATE INTERACTIONS *
1478 **************************/
1480 /* COULOMB ELECTROSTATICS */
1481 velec = _mm_mul_ps(qq21,rinv21);
1482 felec = _mm_mul_ps(velec,rinvsq21);
1486 /* Calculate temporary vectorial force */
1487 tx = _mm_mul_ps(fscal,dx21);
1488 ty = _mm_mul_ps(fscal,dy21);
1489 tz = _mm_mul_ps(fscal,dz21);
1491 /* Update vectorial force */
1492 fix2 = _mm_add_ps(fix2,tx);
1493 fiy2 = _mm_add_ps(fiy2,ty);
1494 fiz2 = _mm_add_ps(fiz2,tz);
1496 fjx1 = _mm_add_ps(fjx1,tx);
1497 fjy1 = _mm_add_ps(fjy1,ty);
1498 fjz1 = _mm_add_ps(fjz1,tz);
1500 /**************************
1501 * CALCULATE INTERACTIONS *
1502 **************************/
1504 /* COULOMB ELECTROSTATICS */
1505 velec = _mm_mul_ps(qq22,rinv22);
1506 felec = _mm_mul_ps(velec,rinvsq22);
1510 /* Calculate temporary vectorial force */
1511 tx = _mm_mul_ps(fscal,dx22);
1512 ty = _mm_mul_ps(fscal,dy22);
1513 tz = _mm_mul_ps(fscal,dz22);
1515 /* Update vectorial force */
1516 fix2 = _mm_add_ps(fix2,tx);
1517 fiy2 = _mm_add_ps(fiy2,ty);
1518 fiz2 = _mm_add_ps(fiz2,tz);
1520 fjx2 = _mm_add_ps(fjx2,tx);
1521 fjy2 = _mm_add_ps(fjy2,ty);
1522 fjz2 = _mm_add_ps(fjz2,tz);
1524 fjptrA = f+j_coord_offsetA;
1525 fjptrB = f+j_coord_offsetB;
1526 fjptrC = f+j_coord_offsetC;
1527 fjptrD = f+j_coord_offsetD;
1529 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1530 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1532 /* Inner loop uses 270 flops */
1535 if(jidx<j_index_end)
1538 /* Get j neighbor index, and coordinate index */
1539 jnrlistA = jjnr[jidx];
1540 jnrlistB = jjnr[jidx+1];
1541 jnrlistC = jjnr[jidx+2];
1542 jnrlistD = jjnr[jidx+3];
1543 /* Sign of each element will be negative for non-real atoms.
1544 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1545 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1547 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1548 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1549 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1550 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1551 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1552 j_coord_offsetA = DIM*jnrA;
1553 j_coord_offsetB = DIM*jnrB;
1554 j_coord_offsetC = DIM*jnrC;
1555 j_coord_offsetD = DIM*jnrD;
1557 /* load j atom coordinates */
1558 gmx_mm_load_3rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1559 x+j_coord_offsetC,x+j_coord_offsetD,
1560 &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
1562 /* Calculate displacement vector */
1563 dx00 = _mm_sub_ps(ix0,jx0);
1564 dy00 = _mm_sub_ps(iy0,jy0);
1565 dz00 = _mm_sub_ps(iz0,jz0);
1566 dx01 = _mm_sub_ps(ix0,jx1);
1567 dy01 = _mm_sub_ps(iy0,jy1);
1568 dz01 = _mm_sub_ps(iz0,jz1);
1569 dx02 = _mm_sub_ps(ix0,jx2);
1570 dy02 = _mm_sub_ps(iy0,jy2);
1571 dz02 = _mm_sub_ps(iz0,jz2);
1572 dx10 = _mm_sub_ps(ix1,jx0);
1573 dy10 = _mm_sub_ps(iy1,jy0);
1574 dz10 = _mm_sub_ps(iz1,jz0);
1575 dx11 = _mm_sub_ps(ix1,jx1);
1576 dy11 = _mm_sub_ps(iy1,jy1);
1577 dz11 = _mm_sub_ps(iz1,jz1);
1578 dx12 = _mm_sub_ps(ix1,jx2);
1579 dy12 = _mm_sub_ps(iy1,jy2);
1580 dz12 = _mm_sub_ps(iz1,jz2);
1581 dx20 = _mm_sub_ps(ix2,jx0);
1582 dy20 = _mm_sub_ps(iy2,jy0);
1583 dz20 = _mm_sub_ps(iz2,jz0);
1584 dx21 = _mm_sub_ps(ix2,jx1);
1585 dy21 = _mm_sub_ps(iy2,jy1);
1586 dz21 = _mm_sub_ps(iz2,jz1);
1587 dx22 = _mm_sub_ps(ix2,jx2);
1588 dy22 = _mm_sub_ps(iy2,jy2);
1589 dz22 = _mm_sub_ps(iz2,jz2);
1591 /* Calculate squared distance and things based on it */
1592 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1593 rsq01 = gmx_mm_calc_rsq_ps(dx01,dy01,dz01);
1594 rsq02 = gmx_mm_calc_rsq_ps(dx02,dy02,dz02);
1595 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1596 rsq11 = gmx_mm_calc_rsq_ps(dx11,dy11,dz11);
1597 rsq12 = gmx_mm_calc_rsq_ps(dx12,dy12,dz12);
1598 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1599 rsq21 = gmx_mm_calc_rsq_ps(dx21,dy21,dz21);
1600 rsq22 = gmx_mm_calc_rsq_ps(dx22,dy22,dz22);
1602 rinv00 = sse41_invsqrt_f(rsq00);
1603 rinv01 = sse41_invsqrt_f(rsq01);
1604 rinv02 = sse41_invsqrt_f(rsq02);
1605 rinv10 = sse41_invsqrt_f(rsq10);
1606 rinv11 = sse41_invsqrt_f(rsq11);
1607 rinv12 = sse41_invsqrt_f(rsq12);
1608 rinv20 = sse41_invsqrt_f(rsq20);
1609 rinv21 = sse41_invsqrt_f(rsq21);
1610 rinv22 = sse41_invsqrt_f(rsq22);
1612 rinvsq00 = _mm_mul_ps(rinv00,rinv00);
1613 rinvsq01 = _mm_mul_ps(rinv01,rinv01);
1614 rinvsq02 = _mm_mul_ps(rinv02,rinv02);
1615 rinvsq10 = _mm_mul_ps(rinv10,rinv10);
1616 rinvsq11 = _mm_mul_ps(rinv11,rinv11);
1617 rinvsq12 = _mm_mul_ps(rinv12,rinv12);
1618 rinvsq20 = _mm_mul_ps(rinv20,rinv20);
1619 rinvsq21 = _mm_mul_ps(rinv21,rinv21);
1620 rinvsq22 = _mm_mul_ps(rinv22,rinv22);
1622 fjx0 = _mm_setzero_ps();
1623 fjy0 = _mm_setzero_ps();
1624 fjz0 = _mm_setzero_ps();
1625 fjx1 = _mm_setzero_ps();
1626 fjy1 = _mm_setzero_ps();
1627 fjz1 = _mm_setzero_ps();
1628 fjx2 = _mm_setzero_ps();
1629 fjy2 = _mm_setzero_ps();
1630 fjz2 = _mm_setzero_ps();
1632 /**************************
1633 * CALCULATE INTERACTIONS *
1634 **************************/
1636 r00 = _mm_mul_ps(rsq00,rinv00);
1637 r00 = _mm_andnot_ps(dummy_mask,r00);
1639 /* Calculate table index by multiplying r with table scale and truncate to integer */
1640 rt = _mm_mul_ps(r00,vftabscale);
1641 vfitab = _mm_cvttps_epi32(rt);
1642 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1643 vfitab = _mm_slli_epi32(vfitab,3);
1645 /* COULOMB ELECTROSTATICS */
1646 velec = _mm_mul_ps(qq00,rinv00);
1647 felec = _mm_mul_ps(velec,rinvsq00);
1649 /* CUBIC SPLINE TABLE DISPERSION */
1650 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1651 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1652 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1653 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1654 _MM_TRANSPOSE4_PS(Y,F,G,H);
1655 Heps = _mm_mul_ps(vfeps,H);
1656 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1657 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1658 fvdw6 = _mm_mul_ps(c6_00,FF);
1660 /* CUBIC SPLINE TABLE REPULSION */
1661 vfitab = _mm_add_epi32(vfitab,ifour);
1662 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1663 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1664 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1665 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1666 _MM_TRANSPOSE4_PS(Y,F,G,H);
1667 Heps = _mm_mul_ps(vfeps,H);
1668 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1669 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1670 fvdw12 = _mm_mul_ps(c12_00,FF);
1671 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1673 fscal = _mm_add_ps(felec,fvdw);
1675 fscal = _mm_andnot_ps(dummy_mask,fscal);
1677 /* Calculate temporary vectorial force */
1678 tx = _mm_mul_ps(fscal,dx00);
1679 ty = _mm_mul_ps(fscal,dy00);
1680 tz = _mm_mul_ps(fscal,dz00);
1682 /* Update vectorial force */
1683 fix0 = _mm_add_ps(fix0,tx);
1684 fiy0 = _mm_add_ps(fiy0,ty);
1685 fiz0 = _mm_add_ps(fiz0,tz);
1687 fjx0 = _mm_add_ps(fjx0,tx);
1688 fjy0 = _mm_add_ps(fjy0,ty);
1689 fjz0 = _mm_add_ps(fjz0,tz);
1691 /**************************
1692 * CALCULATE INTERACTIONS *
1693 **************************/
1695 /* COULOMB ELECTROSTATICS */
1696 velec = _mm_mul_ps(qq01,rinv01);
1697 felec = _mm_mul_ps(velec,rinvsq01);
1701 fscal = _mm_andnot_ps(dummy_mask,fscal);
1703 /* Calculate temporary vectorial force */
1704 tx = _mm_mul_ps(fscal,dx01);
1705 ty = _mm_mul_ps(fscal,dy01);
1706 tz = _mm_mul_ps(fscal,dz01);
1708 /* Update vectorial force */
1709 fix0 = _mm_add_ps(fix0,tx);
1710 fiy0 = _mm_add_ps(fiy0,ty);
1711 fiz0 = _mm_add_ps(fiz0,tz);
1713 fjx1 = _mm_add_ps(fjx1,tx);
1714 fjy1 = _mm_add_ps(fjy1,ty);
1715 fjz1 = _mm_add_ps(fjz1,tz);
1717 /**************************
1718 * CALCULATE INTERACTIONS *
1719 **************************/
1721 /* COULOMB ELECTROSTATICS */
1722 velec = _mm_mul_ps(qq02,rinv02);
1723 felec = _mm_mul_ps(velec,rinvsq02);
1727 fscal = _mm_andnot_ps(dummy_mask,fscal);
1729 /* Calculate temporary vectorial force */
1730 tx = _mm_mul_ps(fscal,dx02);
1731 ty = _mm_mul_ps(fscal,dy02);
1732 tz = _mm_mul_ps(fscal,dz02);
1734 /* Update vectorial force */
1735 fix0 = _mm_add_ps(fix0,tx);
1736 fiy0 = _mm_add_ps(fiy0,ty);
1737 fiz0 = _mm_add_ps(fiz0,tz);
1739 fjx2 = _mm_add_ps(fjx2,tx);
1740 fjy2 = _mm_add_ps(fjy2,ty);
1741 fjz2 = _mm_add_ps(fjz2,tz);
1743 /**************************
1744 * CALCULATE INTERACTIONS *
1745 **************************/
1747 /* COULOMB ELECTROSTATICS */
1748 velec = _mm_mul_ps(qq10,rinv10);
1749 felec = _mm_mul_ps(velec,rinvsq10);
1753 fscal = _mm_andnot_ps(dummy_mask,fscal);
1755 /* Calculate temporary vectorial force */
1756 tx = _mm_mul_ps(fscal,dx10);
1757 ty = _mm_mul_ps(fscal,dy10);
1758 tz = _mm_mul_ps(fscal,dz10);
1760 /* Update vectorial force */
1761 fix1 = _mm_add_ps(fix1,tx);
1762 fiy1 = _mm_add_ps(fiy1,ty);
1763 fiz1 = _mm_add_ps(fiz1,tz);
1765 fjx0 = _mm_add_ps(fjx0,tx);
1766 fjy0 = _mm_add_ps(fjy0,ty);
1767 fjz0 = _mm_add_ps(fjz0,tz);
1769 /**************************
1770 * CALCULATE INTERACTIONS *
1771 **************************/
1773 /* COULOMB ELECTROSTATICS */
1774 velec = _mm_mul_ps(qq11,rinv11);
1775 felec = _mm_mul_ps(velec,rinvsq11);
1779 fscal = _mm_andnot_ps(dummy_mask,fscal);
1781 /* Calculate temporary vectorial force */
1782 tx = _mm_mul_ps(fscal,dx11);
1783 ty = _mm_mul_ps(fscal,dy11);
1784 tz = _mm_mul_ps(fscal,dz11);
1786 /* Update vectorial force */
1787 fix1 = _mm_add_ps(fix1,tx);
1788 fiy1 = _mm_add_ps(fiy1,ty);
1789 fiz1 = _mm_add_ps(fiz1,tz);
1791 fjx1 = _mm_add_ps(fjx1,tx);
1792 fjy1 = _mm_add_ps(fjy1,ty);
1793 fjz1 = _mm_add_ps(fjz1,tz);
1795 /**************************
1796 * CALCULATE INTERACTIONS *
1797 **************************/
1799 /* COULOMB ELECTROSTATICS */
1800 velec = _mm_mul_ps(qq12,rinv12);
1801 felec = _mm_mul_ps(velec,rinvsq12);
1805 fscal = _mm_andnot_ps(dummy_mask,fscal);
1807 /* Calculate temporary vectorial force */
1808 tx = _mm_mul_ps(fscal,dx12);
1809 ty = _mm_mul_ps(fscal,dy12);
1810 tz = _mm_mul_ps(fscal,dz12);
1812 /* Update vectorial force */
1813 fix1 = _mm_add_ps(fix1,tx);
1814 fiy1 = _mm_add_ps(fiy1,ty);
1815 fiz1 = _mm_add_ps(fiz1,tz);
1817 fjx2 = _mm_add_ps(fjx2,tx);
1818 fjy2 = _mm_add_ps(fjy2,ty);
1819 fjz2 = _mm_add_ps(fjz2,tz);
1821 /**************************
1822 * CALCULATE INTERACTIONS *
1823 **************************/
1825 /* COULOMB ELECTROSTATICS */
1826 velec = _mm_mul_ps(qq20,rinv20);
1827 felec = _mm_mul_ps(velec,rinvsq20);
1831 fscal = _mm_andnot_ps(dummy_mask,fscal);
1833 /* Calculate temporary vectorial force */
1834 tx = _mm_mul_ps(fscal,dx20);
1835 ty = _mm_mul_ps(fscal,dy20);
1836 tz = _mm_mul_ps(fscal,dz20);
1838 /* Update vectorial force */
1839 fix2 = _mm_add_ps(fix2,tx);
1840 fiy2 = _mm_add_ps(fiy2,ty);
1841 fiz2 = _mm_add_ps(fiz2,tz);
1843 fjx0 = _mm_add_ps(fjx0,tx);
1844 fjy0 = _mm_add_ps(fjy0,ty);
1845 fjz0 = _mm_add_ps(fjz0,tz);
1847 /**************************
1848 * CALCULATE INTERACTIONS *
1849 **************************/
1851 /* COULOMB ELECTROSTATICS */
1852 velec = _mm_mul_ps(qq21,rinv21);
1853 felec = _mm_mul_ps(velec,rinvsq21);
1857 fscal = _mm_andnot_ps(dummy_mask,fscal);
1859 /* Calculate temporary vectorial force */
1860 tx = _mm_mul_ps(fscal,dx21);
1861 ty = _mm_mul_ps(fscal,dy21);
1862 tz = _mm_mul_ps(fscal,dz21);
1864 /* Update vectorial force */
1865 fix2 = _mm_add_ps(fix2,tx);
1866 fiy2 = _mm_add_ps(fiy2,ty);
1867 fiz2 = _mm_add_ps(fiz2,tz);
1869 fjx1 = _mm_add_ps(fjx1,tx);
1870 fjy1 = _mm_add_ps(fjy1,ty);
1871 fjz1 = _mm_add_ps(fjz1,tz);
1873 /**************************
1874 * CALCULATE INTERACTIONS *
1875 **************************/
1877 /* COULOMB ELECTROSTATICS */
1878 velec = _mm_mul_ps(qq22,rinv22);
1879 felec = _mm_mul_ps(velec,rinvsq22);
1883 fscal = _mm_andnot_ps(dummy_mask,fscal);
1885 /* Calculate temporary vectorial force */
1886 tx = _mm_mul_ps(fscal,dx22);
1887 ty = _mm_mul_ps(fscal,dy22);
1888 tz = _mm_mul_ps(fscal,dz22);
1890 /* Update vectorial force */
1891 fix2 = _mm_add_ps(fix2,tx);
1892 fiy2 = _mm_add_ps(fiy2,ty);
1893 fiz2 = _mm_add_ps(fiz2,tz);
1895 fjx2 = _mm_add_ps(fjx2,tx);
1896 fjy2 = _mm_add_ps(fjy2,ty);
1897 fjz2 = _mm_add_ps(fjz2,tz);
1899 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1900 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1901 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1902 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1904 gmx_mm_decrement_3rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,
1905 fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1907 /* Inner loop uses 271 flops */
1910 /* End of innermost loop */
1912 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1913 f+i_coord_offset,fshift+i_shift_offset);
1915 /* Increment number of inner iterations */
1916 inneriter += j_index_end - j_index_start;
1918 /* Outer loop uses 18 flops */
1921 /* Increment number of outer iterations */
1924 /* Update outer/inner flops */
1926 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3W3_F,outeriter*18 + inneriter*271);