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36 * Note: this file was generated by the GROMACS sse4_1_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse4_1_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse4_1_single
51 * Electrostatics interaction: CubicSplineTable
52 * VdW interaction: LennardJones
53 * Geometry: Water4-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_VF_sse4_1_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
75 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
81 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
89 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
90 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
91 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
92 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
93 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
94 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
95 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
96 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
99 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
102 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
103 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
105 __m128i ifour = _mm_set1_epi32(4);
106 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
108 __m128 dummy_mask,cutoff_mask;
109 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
110 __m128 one = _mm_set1_ps(1.0);
111 __m128 two = _mm_set1_ps(2.0);
117 jindex = nlist->jindex;
119 shiftidx = nlist->shift;
121 shiftvec = fr->shift_vec[0];
122 fshift = fr->fshift[0];
123 facel = _mm_set1_ps(fr->ic->epsfac);
124 charge = mdatoms->chargeA;
125 nvdwtype = fr->ntype;
127 vdwtype = mdatoms->typeA;
129 vftab = kernel_data->table_elec->data;
130 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
132 /* Setup water-specific parameters */
133 inr = nlist->iinr[0];
134 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
135 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
136 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
137 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
139 /* Avoid stupid compiler warnings */
140 jnrA = jnrB = jnrC = jnrD = 0;
149 for(iidx=0;iidx<4*DIM;iidx++)
154 /* Start outer loop over neighborlists */
155 for(iidx=0; iidx<nri; iidx++)
157 /* Load shift vector for this list */
158 i_shift_offset = DIM*shiftidx[iidx];
160 /* Load limits for loop over neighbors */
161 j_index_start = jindex[iidx];
162 j_index_end = jindex[iidx+1];
164 /* Get outer coordinate index */
166 i_coord_offset = DIM*inr;
168 /* Load i particle coords and add shift vector */
169 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
170 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
172 fix0 = _mm_setzero_ps();
173 fiy0 = _mm_setzero_ps();
174 fiz0 = _mm_setzero_ps();
175 fix1 = _mm_setzero_ps();
176 fiy1 = _mm_setzero_ps();
177 fiz1 = _mm_setzero_ps();
178 fix2 = _mm_setzero_ps();
179 fiy2 = _mm_setzero_ps();
180 fiz2 = _mm_setzero_ps();
181 fix3 = _mm_setzero_ps();
182 fiy3 = _mm_setzero_ps();
183 fiz3 = _mm_setzero_ps();
185 /* Reset potential sums */
186 velecsum = _mm_setzero_ps();
187 vvdwsum = _mm_setzero_ps();
189 /* Start inner kernel loop */
190 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
193 /* Get j neighbor index, and coordinate index */
198 j_coord_offsetA = DIM*jnrA;
199 j_coord_offsetB = DIM*jnrB;
200 j_coord_offsetC = DIM*jnrC;
201 j_coord_offsetD = DIM*jnrD;
203 /* load j atom coordinates */
204 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
205 x+j_coord_offsetC,x+j_coord_offsetD,
208 /* Calculate displacement vector */
209 dx00 = _mm_sub_ps(ix0,jx0);
210 dy00 = _mm_sub_ps(iy0,jy0);
211 dz00 = _mm_sub_ps(iz0,jz0);
212 dx10 = _mm_sub_ps(ix1,jx0);
213 dy10 = _mm_sub_ps(iy1,jy0);
214 dz10 = _mm_sub_ps(iz1,jz0);
215 dx20 = _mm_sub_ps(ix2,jx0);
216 dy20 = _mm_sub_ps(iy2,jy0);
217 dz20 = _mm_sub_ps(iz2,jz0);
218 dx30 = _mm_sub_ps(ix3,jx0);
219 dy30 = _mm_sub_ps(iy3,jy0);
220 dz30 = _mm_sub_ps(iz3,jz0);
222 /* Calculate squared distance and things based on it */
223 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
224 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
225 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
226 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
228 rinv10 = sse41_invsqrt_f(rsq10);
229 rinv20 = sse41_invsqrt_f(rsq20);
230 rinv30 = sse41_invsqrt_f(rsq30);
232 rinvsq00 = sse41_inv_f(rsq00);
234 /* Load parameters for j particles */
235 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
236 charge+jnrC+0,charge+jnrD+0);
237 vdwjidx0A = 2*vdwtype[jnrA+0];
238 vdwjidx0B = 2*vdwtype[jnrB+0];
239 vdwjidx0C = 2*vdwtype[jnrC+0];
240 vdwjidx0D = 2*vdwtype[jnrD+0];
242 fjx0 = _mm_setzero_ps();
243 fjy0 = _mm_setzero_ps();
244 fjz0 = _mm_setzero_ps();
246 /**************************
247 * CALCULATE INTERACTIONS *
248 **************************/
250 /* Compute parameters for interactions between i and j atoms */
251 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
252 vdwparam+vdwioffset0+vdwjidx0B,
253 vdwparam+vdwioffset0+vdwjidx0C,
254 vdwparam+vdwioffset0+vdwjidx0D,
257 /* LENNARD-JONES DISPERSION/REPULSION */
259 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
260 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
261 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
262 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
263 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
265 /* Update potential sum for this i atom from the interaction with this j atom. */
266 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
270 /* Calculate temporary vectorial force */
271 tx = _mm_mul_ps(fscal,dx00);
272 ty = _mm_mul_ps(fscal,dy00);
273 tz = _mm_mul_ps(fscal,dz00);
275 /* Update vectorial force */
276 fix0 = _mm_add_ps(fix0,tx);
277 fiy0 = _mm_add_ps(fiy0,ty);
278 fiz0 = _mm_add_ps(fiz0,tz);
280 fjx0 = _mm_add_ps(fjx0,tx);
281 fjy0 = _mm_add_ps(fjy0,ty);
282 fjz0 = _mm_add_ps(fjz0,tz);
284 /**************************
285 * CALCULATE INTERACTIONS *
286 **************************/
288 r10 = _mm_mul_ps(rsq10,rinv10);
290 /* Compute parameters for interactions between i and j atoms */
291 qq10 = _mm_mul_ps(iq1,jq0);
293 /* Calculate table index by multiplying r with table scale and truncate to integer */
294 rt = _mm_mul_ps(r10,vftabscale);
295 vfitab = _mm_cvttps_epi32(rt);
296 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
297 vfitab = _mm_slli_epi32(vfitab,2);
299 /* CUBIC SPLINE TABLE ELECTROSTATICS */
300 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
301 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
302 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
303 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
304 _MM_TRANSPOSE4_PS(Y,F,G,H);
305 Heps = _mm_mul_ps(vfeps,H);
306 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
307 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
308 velec = _mm_mul_ps(qq10,VV);
309 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
310 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
312 /* Update potential sum for this i atom from the interaction with this j atom. */
313 velecsum = _mm_add_ps(velecsum,velec);
317 /* Calculate temporary vectorial force */
318 tx = _mm_mul_ps(fscal,dx10);
319 ty = _mm_mul_ps(fscal,dy10);
320 tz = _mm_mul_ps(fscal,dz10);
322 /* Update vectorial force */
323 fix1 = _mm_add_ps(fix1,tx);
324 fiy1 = _mm_add_ps(fiy1,ty);
325 fiz1 = _mm_add_ps(fiz1,tz);
327 fjx0 = _mm_add_ps(fjx0,tx);
328 fjy0 = _mm_add_ps(fjy0,ty);
329 fjz0 = _mm_add_ps(fjz0,tz);
331 /**************************
332 * CALCULATE INTERACTIONS *
333 **************************/
335 r20 = _mm_mul_ps(rsq20,rinv20);
337 /* Compute parameters for interactions between i and j atoms */
338 qq20 = _mm_mul_ps(iq2,jq0);
340 /* Calculate table index by multiplying r with table scale and truncate to integer */
341 rt = _mm_mul_ps(r20,vftabscale);
342 vfitab = _mm_cvttps_epi32(rt);
343 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
344 vfitab = _mm_slli_epi32(vfitab,2);
346 /* CUBIC SPLINE TABLE ELECTROSTATICS */
347 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
348 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
349 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
350 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
351 _MM_TRANSPOSE4_PS(Y,F,G,H);
352 Heps = _mm_mul_ps(vfeps,H);
353 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
354 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
355 velec = _mm_mul_ps(qq20,VV);
356 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
357 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
359 /* Update potential sum for this i atom from the interaction with this j atom. */
360 velecsum = _mm_add_ps(velecsum,velec);
364 /* Calculate temporary vectorial force */
365 tx = _mm_mul_ps(fscal,dx20);
366 ty = _mm_mul_ps(fscal,dy20);
367 tz = _mm_mul_ps(fscal,dz20);
369 /* Update vectorial force */
370 fix2 = _mm_add_ps(fix2,tx);
371 fiy2 = _mm_add_ps(fiy2,ty);
372 fiz2 = _mm_add_ps(fiz2,tz);
374 fjx0 = _mm_add_ps(fjx0,tx);
375 fjy0 = _mm_add_ps(fjy0,ty);
376 fjz0 = _mm_add_ps(fjz0,tz);
378 /**************************
379 * CALCULATE INTERACTIONS *
380 **************************/
382 r30 = _mm_mul_ps(rsq30,rinv30);
384 /* Compute parameters for interactions between i and j atoms */
385 qq30 = _mm_mul_ps(iq3,jq0);
387 /* Calculate table index by multiplying r with table scale and truncate to integer */
388 rt = _mm_mul_ps(r30,vftabscale);
389 vfitab = _mm_cvttps_epi32(rt);
390 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
391 vfitab = _mm_slli_epi32(vfitab,2);
393 /* CUBIC SPLINE TABLE ELECTROSTATICS */
394 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
395 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
396 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
397 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
398 _MM_TRANSPOSE4_PS(Y,F,G,H);
399 Heps = _mm_mul_ps(vfeps,H);
400 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
401 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
402 velec = _mm_mul_ps(qq30,VV);
403 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
404 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
406 /* Update potential sum for this i atom from the interaction with this j atom. */
407 velecsum = _mm_add_ps(velecsum,velec);
411 /* Calculate temporary vectorial force */
412 tx = _mm_mul_ps(fscal,dx30);
413 ty = _mm_mul_ps(fscal,dy30);
414 tz = _mm_mul_ps(fscal,dz30);
416 /* Update vectorial force */
417 fix3 = _mm_add_ps(fix3,tx);
418 fiy3 = _mm_add_ps(fiy3,ty);
419 fiz3 = _mm_add_ps(fiz3,tz);
421 fjx0 = _mm_add_ps(fjx0,tx);
422 fjy0 = _mm_add_ps(fjy0,ty);
423 fjz0 = _mm_add_ps(fjz0,tz);
425 fjptrA = f+j_coord_offsetA;
426 fjptrB = f+j_coord_offsetB;
427 fjptrC = f+j_coord_offsetC;
428 fjptrD = f+j_coord_offsetD;
430 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
432 /* Inner loop uses 161 flops */
438 /* Get j neighbor index, and coordinate index */
439 jnrlistA = jjnr[jidx];
440 jnrlistB = jjnr[jidx+1];
441 jnrlistC = jjnr[jidx+2];
442 jnrlistD = jjnr[jidx+3];
443 /* Sign of each element will be negative for non-real atoms.
444 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
445 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
447 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
448 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
449 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
450 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
451 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
452 j_coord_offsetA = DIM*jnrA;
453 j_coord_offsetB = DIM*jnrB;
454 j_coord_offsetC = DIM*jnrC;
455 j_coord_offsetD = DIM*jnrD;
457 /* load j atom coordinates */
458 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
459 x+j_coord_offsetC,x+j_coord_offsetD,
462 /* Calculate displacement vector */
463 dx00 = _mm_sub_ps(ix0,jx0);
464 dy00 = _mm_sub_ps(iy0,jy0);
465 dz00 = _mm_sub_ps(iz0,jz0);
466 dx10 = _mm_sub_ps(ix1,jx0);
467 dy10 = _mm_sub_ps(iy1,jy0);
468 dz10 = _mm_sub_ps(iz1,jz0);
469 dx20 = _mm_sub_ps(ix2,jx0);
470 dy20 = _mm_sub_ps(iy2,jy0);
471 dz20 = _mm_sub_ps(iz2,jz0);
472 dx30 = _mm_sub_ps(ix3,jx0);
473 dy30 = _mm_sub_ps(iy3,jy0);
474 dz30 = _mm_sub_ps(iz3,jz0);
476 /* Calculate squared distance and things based on it */
477 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
478 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
479 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
480 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
482 rinv10 = sse41_invsqrt_f(rsq10);
483 rinv20 = sse41_invsqrt_f(rsq20);
484 rinv30 = sse41_invsqrt_f(rsq30);
486 rinvsq00 = sse41_inv_f(rsq00);
488 /* Load parameters for j particles */
489 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
490 charge+jnrC+0,charge+jnrD+0);
491 vdwjidx0A = 2*vdwtype[jnrA+0];
492 vdwjidx0B = 2*vdwtype[jnrB+0];
493 vdwjidx0C = 2*vdwtype[jnrC+0];
494 vdwjidx0D = 2*vdwtype[jnrD+0];
496 fjx0 = _mm_setzero_ps();
497 fjy0 = _mm_setzero_ps();
498 fjz0 = _mm_setzero_ps();
500 /**************************
501 * CALCULATE INTERACTIONS *
502 **************************/
504 /* Compute parameters for interactions between i and j atoms */
505 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
506 vdwparam+vdwioffset0+vdwjidx0B,
507 vdwparam+vdwioffset0+vdwjidx0C,
508 vdwparam+vdwioffset0+vdwjidx0D,
511 /* LENNARD-JONES DISPERSION/REPULSION */
513 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
514 vvdw6 = _mm_mul_ps(c6_00,rinvsix);
515 vvdw12 = _mm_mul_ps(c12_00,_mm_mul_ps(rinvsix,rinvsix));
516 vvdw = _mm_sub_ps( _mm_mul_ps(vvdw12,one_twelfth) , _mm_mul_ps(vvdw6,one_sixth) );
517 fvdw = _mm_mul_ps(_mm_sub_ps(vvdw12,vvdw6),rinvsq00);
519 /* Update potential sum for this i atom from the interaction with this j atom. */
520 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
521 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
525 fscal = _mm_andnot_ps(dummy_mask,fscal);
527 /* Calculate temporary vectorial force */
528 tx = _mm_mul_ps(fscal,dx00);
529 ty = _mm_mul_ps(fscal,dy00);
530 tz = _mm_mul_ps(fscal,dz00);
532 /* Update vectorial force */
533 fix0 = _mm_add_ps(fix0,tx);
534 fiy0 = _mm_add_ps(fiy0,ty);
535 fiz0 = _mm_add_ps(fiz0,tz);
537 fjx0 = _mm_add_ps(fjx0,tx);
538 fjy0 = _mm_add_ps(fjy0,ty);
539 fjz0 = _mm_add_ps(fjz0,tz);
541 /**************************
542 * CALCULATE INTERACTIONS *
543 **************************/
545 r10 = _mm_mul_ps(rsq10,rinv10);
546 r10 = _mm_andnot_ps(dummy_mask,r10);
548 /* Compute parameters for interactions between i and j atoms */
549 qq10 = _mm_mul_ps(iq1,jq0);
551 /* Calculate table index by multiplying r with table scale and truncate to integer */
552 rt = _mm_mul_ps(r10,vftabscale);
553 vfitab = _mm_cvttps_epi32(rt);
554 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
555 vfitab = _mm_slli_epi32(vfitab,2);
557 /* CUBIC SPLINE TABLE ELECTROSTATICS */
558 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
559 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
560 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
561 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
562 _MM_TRANSPOSE4_PS(Y,F,G,H);
563 Heps = _mm_mul_ps(vfeps,H);
564 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
565 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
566 velec = _mm_mul_ps(qq10,VV);
567 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
568 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
570 /* Update potential sum for this i atom from the interaction with this j atom. */
571 velec = _mm_andnot_ps(dummy_mask,velec);
572 velecsum = _mm_add_ps(velecsum,velec);
576 fscal = _mm_andnot_ps(dummy_mask,fscal);
578 /* Calculate temporary vectorial force */
579 tx = _mm_mul_ps(fscal,dx10);
580 ty = _mm_mul_ps(fscal,dy10);
581 tz = _mm_mul_ps(fscal,dz10);
583 /* Update vectorial force */
584 fix1 = _mm_add_ps(fix1,tx);
585 fiy1 = _mm_add_ps(fiy1,ty);
586 fiz1 = _mm_add_ps(fiz1,tz);
588 fjx0 = _mm_add_ps(fjx0,tx);
589 fjy0 = _mm_add_ps(fjy0,ty);
590 fjz0 = _mm_add_ps(fjz0,tz);
592 /**************************
593 * CALCULATE INTERACTIONS *
594 **************************/
596 r20 = _mm_mul_ps(rsq20,rinv20);
597 r20 = _mm_andnot_ps(dummy_mask,r20);
599 /* Compute parameters for interactions between i and j atoms */
600 qq20 = _mm_mul_ps(iq2,jq0);
602 /* Calculate table index by multiplying r with table scale and truncate to integer */
603 rt = _mm_mul_ps(r20,vftabscale);
604 vfitab = _mm_cvttps_epi32(rt);
605 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
606 vfitab = _mm_slli_epi32(vfitab,2);
608 /* CUBIC SPLINE TABLE ELECTROSTATICS */
609 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
610 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
611 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
612 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
613 _MM_TRANSPOSE4_PS(Y,F,G,H);
614 Heps = _mm_mul_ps(vfeps,H);
615 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
616 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
617 velec = _mm_mul_ps(qq20,VV);
618 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
619 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
621 /* Update potential sum for this i atom from the interaction with this j atom. */
622 velec = _mm_andnot_ps(dummy_mask,velec);
623 velecsum = _mm_add_ps(velecsum,velec);
627 fscal = _mm_andnot_ps(dummy_mask,fscal);
629 /* Calculate temporary vectorial force */
630 tx = _mm_mul_ps(fscal,dx20);
631 ty = _mm_mul_ps(fscal,dy20);
632 tz = _mm_mul_ps(fscal,dz20);
634 /* Update vectorial force */
635 fix2 = _mm_add_ps(fix2,tx);
636 fiy2 = _mm_add_ps(fiy2,ty);
637 fiz2 = _mm_add_ps(fiz2,tz);
639 fjx0 = _mm_add_ps(fjx0,tx);
640 fjy0 = _mm_add_ps(fjy0,ty);
641 fjz0 = _mm_add_ps(fjz0,tz);
643 /**************************
644 * CALCULATE INTERACTIONS *
645 **************************/
647 r30 = _mm_mul_ps(rsq30,rinv30);
648 r30 = _mm_andnot_ps(dummy_mask,r30);
650 /* Compute parameters for interactions between i and j atoms */
651 qq30 = _mm_mul_ps(iq3,jq0);
653 /* Calculate table index by multiplying r with table scale and truncate to integer */
654 rt = _mm_mul_ps(r30,vftabscale);
655 vfitab = _mm_cvttps_epi32(rt);
656 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
657 vfitab = _mm_slli_epi32(vfitab,2);
659 /* CUBIC SPLINE TABLE ELECTROSTATICS */
660 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
661 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
662 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
663 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
664 _MM_TRANSPOSE4_PS(Y,F,G,H);
665 Heps = _mm_mul_ps(vfeps,H);
666 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
667 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
668 velec = _mm_mul_ps(qq30,VV);
669 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
670 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
672 /* Update potential sum for this i atom from the interaction with this j atom. */
673 velec = _mm_andnot_ps(dummy_mask,velec);
674 velecsum = _mm_add_ps(velecsum,velec);
678 fscal = _mm_andnot_ps(dummy_mask,fscal);
680 /* Calculate temporary vectorial force */
681 tx = _mm_mul_ps(fscal,dx30);
682 ty = _mm_mul_ps(fscal,dy30);
683 tz = _mm_mul_ps(fscal,dz30);
685 /* Update vectorial force */
686 fix3 = _mm_add_ps(fix3,tx);
687 fiy3 = _mm_add_ps(fiy3,ty);
688 fiz3 = _mm_add_ps(fiz3,tz);
690 fjx0 = _mm_add_ps(fjx0,tx);
691 fjy0 = _mm_add_ps(fjy0,ty);
692 fjz0 = _mm_add_ps(fjz0,tz);
694 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
695 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
696 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
697 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
699 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
701 /* Inner loop uses 164 flops */
704 /* End of innermost loop */
706 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
707 f+i_coord_offset,fshift+i_shift_offset);
710 /* Update potential energies */
711 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
712 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
714 /* Increment number of inner iterations */
715 inneriter += j_index_end - j_index_start;
717 /* Outer loop uses 26 flops */
720 /* Increment number of outer iterations */
723 /* Update outer/inner flops */
725 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_VF,outeriter*26 + inneriter*164);
728 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse4_1_single
729 * Electrostatics interaction: CubicSplineTable
730 * VdW interaction: LennardJones
731 * Geometry: Water4-Particle
732 * Calculate force/pot: Force
735 nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_F_sse4_1_single
736 (t_nblist * gmx_restrict nlist,
737 rvec * gmx_restrict xx,
738 rvec * gmx_restrict ff,
739 struct t_forcerec * gmx_restrict fr,
740 t_mdatoms * gmx_restrict mdatoms,
741 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
742 t_nrnb * gmx_restrict nrnb)
744 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
745 * just 0 for non-waters.
746 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
747 * jnr indices corresponding to data put in the four positions in the SIMD register.
749 int i_shift_offset,i_coord_offset,outeriter,inneriter;
750 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
751 int jnrA,jnrB,jnrC,jnrD;
752 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
753 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
754 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
756 real *shiftvec,*fshift,*x,*f;
757 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
759 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
761 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
763 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
765 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
767 __m128 ix3,iy3,iz3,fix3,fiy3,fiz3,iq3,isai3;
768 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
769 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
770 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
771 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
772 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
773 __m128 dx30,dy30,dz30,rsq30,rinv30,rinvsq30,r30,qq30,c6_30,c12_30;
774 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
777 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
780 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
781 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
783 __m128i ifour = _mm_set1_epi32(4);
784 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
786 __m128 dummy_mask,cutoff_mask;
787 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
788 __m128 one = _mm_set1_ps(1.0);
789 __m128 two = _mm_set1_ps(2.0);
795 jindex = nlist->jindex;
797 shiftidx = nlist->shift;
799 shiftvec = fr->shift_vec[0];
800 fshift = fr->fshift[0];
801 facel = _mm_set1_ps(fr->ic->epsfac);
802 charge = mdatoms->chargeA;
803 nvdwtype = fr->ntype;
805 vdwtype = mdatoms->typeA;
807 vftab = kernel_data->table_elec->data;
808 vftabscale = _mm_set1_ps(kernel_data->table_elec->scale);
810 /* Setup water-specific parameters */
811 inr = nlist->iinr[0];
812 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
813 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
814 iq3 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+3]));
815 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
817 /* Avoid stupid compiler warnings */
818 jnrA = jnrB = jnrC = jnrD = 0;
827 for(iidx=0;iidx<4*DIM;iidx++)
832 /* Start outer loop over neighborlists */
833 for(iidx=0; iidx<nri; iidx++)
835 /* Load shift vector for this list */
836 i_shift_offset = DIM*shiftidx[iidx];
838 /* Load limits for loop over neighbors */
839 j_index_start = jindex[iidx];
840 j_index_end = jindex[iidx+1];
842 /* Get outer coordinate index */
844 i_coord_offset = DIM*inr;
846 /* Load i particle coords and add shift vector */
847 gmx_mm_load_shift_and_4rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
848 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
850 fix0 = _mm_setzero_ps();
851 fiy0 = _mm_setzero_ps();
852 fiz0 = _mm_setzero_ps();
853 fix1 = _mm_setzero_ps();
854 fiy1 = _mm_setzero_ps();
855 fiz1 = _mm_setzero_ps();
856 fix2 = _mm_setzero_ps();
857 fiy2 = _mm_setzero_ps();
858 fiz2 = _mm_setzero_ps();
859 fix3 = _mm_setzero_ps();
860 fiy3 = _mm_setzero_ps();
861 fiz3 = _mm_setzero_ps();
863 /* Start inner kernel loop */
864 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
867 /* Get j neighbor index, and coordinate index */
872 j_coord_offsetA = DIM*jnrA;
873 j_coord_offsetB = DIM*jnrB;
874 j_coord_offsetC = DIM*jnrC;
875 j_coord_offsetD = DIM*jnrD;
877 /* load j atom coordinates */
878 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
879 x+j_coord_offsetC,x+j_coord_offsetD,
882 /* Calculate displacement vector */
883 dx00 = _mm_sub_ps(ix0,jx0);
884 dy00 = _mm_sub_ps(iy0,jy0);
885 dz00 = _mm_sub_ps(iz0,jz0);
886 dx10 = _mm_sub_ps(ix1,jx0);
887 dy10 = _mm_sub_ps(iy1,jy0);
888 dz10 = _mm_sub_ps(iz1,jz0);
889 dx20 = _mm_sub_ps(ix2,jx0);
890 dy20 = _mm_sub_ps(iy2,jy0);
891 dz20 = _mm_sub_ps(iz2,jz0);
892 dx30 = _mm_sub_ps(ix3,jx0);
893 dy30 = _mm_sub_ps(iy3,jy0);
894 dz30 = _mm_sub_ps(iz3,jz0);
896 /* Calculate squared distance and things based on it */
897 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
898 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
899 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
900 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
902 rinv10 = sse41_invsqrt_f(rsq10);
903 rinv20 = sse41_invsqrt_f(rsq20);
904 rinv30 = sse41_invsqrt_f(rsq30);
906 rinvsq00 = sse41_inv_f(rsq00);
908 /* Load parameters for j particles */
909 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
910 charge+jnrC+0,charge+jnrD+0);
911 vdwjidx0A = 2*vdwtype[jnrA+0];
912 vdwjidx0B = 2*vdwtype[jnrB+0];
913 vdwjidx0C = 2*vdwtype[jnrC+0];
914 vdwjidx0D = 2*vdwtype[jnrD+0];
916 fjx0 = _mm_setzero_ps();
917 fjy0 = _mm_setzero_ps();
918 fjz0 = _mm_setzero_ps();
920 /**************************
921 * CALCULATE INTERACTIONS *
922 **************************/
924 /* Compute parameters for interactions between i and j atoms */
925 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
926 vdwparam+vdwioffset0+vdwjidx0B,
927 vdwparam+vdwioffset0+vdwjidx0C,
928 vdwparam+vdwioffset0+vdwjidx0D,
931 /* LENNARD-JONES DISPERSION/REPULSION */
933 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
934 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
938 /* Calculate temporary vectorial force */
939 tx = _mm_mul_ps(fscal,dx00);
940 ty = _mm_mul_ps(fscal,dy00);
941 tz = _mm_mul_ps(fscal,dz00);
943 /* Update vectorial force */
944 fix0 = _mm_add_ps(fix0,tx);
945 fiy0 = _mm_add_ps(fiy0,ty);
946 fiz0 = _mm_add_ps(fiz0,tz);
948 fjx0 = _mm_add_ps(fjx0,tx);
949 fjy0 = _mm_add_ps(fjy0,ty);
950 fjz0 = _mm_add_ps(fjz0,tz);
952 /**************************
953 * CALCULATE INTERACTIONS *
954 **************************/
956 r10 = _mm_mul_ps(rsq10,rinv10);
958 /* Compute parameters for interactions between i and j atoms */
959 qq10 = _mm_mul_ps(iq1,jq0);
961 /* Calculate table index by multiplying r with table scale and truncate to integer */
962 rt = _mm_mul_ps(r10,vftabscale);
963 vfitab = _mm_cvttps_epi32(rt);
964 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
965 vfitab = _mm_slli_epi32(vfitab,2);
967 /* CUBIC SPLINE TABLE ELECTROSTATICS */
968 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
969 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
970 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
971 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
972 _MM_TRANSPOSE4_PS(Y,F,G,H);
973 Heps = _mm_mul_ps(vfeps,H);
974 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
975 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
976 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
980 /* Calculate temporary vectorial force */
981 tx = _mm_mul_ps(fscal,dx10);
982 ty = _mm_mul_ps(fscal,dy10);
983 tz = _mm_mul_ps(fscal,dz10);
985 /* Update vectorial force */
986 fix1 = _mm_add_ps(fix1,tx);
987 fiy1 = _mm_add_ps(fiy1,ty);
988 fiz1 = _mm_add_ps(fiz1,tz);
990 fjx0 = _mm_add_ps(fjx0,tx);
991 fjy0 = _mm_add_ps(fjy0,ty);
992 fjz0 = _mm_add_ps(fjz0,tz);
994 /**************************
995 * CALCULATE INTERACTIONS *
996 **************************/
998 r20 = _mm_mul_ps(rsq20,rinv20);
1000 /* Compute parameters for interactions between i and j atoms */
1001 qq20 = _mm_mul_ps(iq2,jq0);
1003 /* Calculate table index by multiplying r with table scale and truncate to integer */
1004 rt = _mm_mul_ps(r20,vftabscale);
1005 vfitab = _mm_cvttps_epi32(rt);
1006 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1007 vfitab = _mm_slli_epi32(vfitab,2);
1009 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1010 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1011 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1012 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1013 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1014 _MM_TRANSPOSE4_PS(Y,F,G,H);
1015 Heps = _mm_mul_ps(vfeps,H);
1016 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1017 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1018 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1022 /* Calculate temporary vectorial force */
1023 tx = _mm_mul_ps(fscal,dx20);
1024 ty = _mm_mul_ps(fscal,dy20);
1025 tz = _mm_mul_ps(fscal,dz20);
1027 /* Update vectorial force */
1028 fix2 = _mm_add_ps(fix2,tx);
1029 fiy2 = _mm_add_ps(fiy2,ty);
1030 fiz2 = _mm_add_ps(fiz2,tz);
1032 fjx0 = _mm_add_ps(fjx0,tx);
1033 fjy0 = _mm_add_ps(fjy0,ty);
1034 fjz0 = _mm_add_ps(fjz0,tz);
1036 /**************************
1037 * CALCULATE INTERACTIONS *
1038 **************************/
1040 r30 = _mm_mul_ps(rsq30,rinv30);
1042 /* Compute parameters for interactions between i and j atoms */
1043 qq30 = _mm_mul_ps(iq3,jq0);
1045 /* Calculate table index by multiplying r with table scale and truncate to integer */
1046 rt = _mm_mul_ps(r30,vftabscale);
1047 vfitab = _mm_cvttps_epi32(rt);
1048 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1049 vfitab = _mm_slli_epi32(vfitab,2);
1051 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1052 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1053 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1054 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1055 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1056 _MM_TRANSPOSE4_PS(Y,F,G,H);
1057 Heps = _mm_mul_ps(vfeps,H);
1058 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1059 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1060 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1064 /* Calculate temporary vectorial force */
1065 tx = _mm_mul_ps(fscal,dx30);
1066 ty = _mm_mul_ps(fscal,dy30);
1067 tz = _mm_mul_ps(fscal,dz30);
1069 /* Update vectorial force */
1070 fix3 = _mm_add_ps(fix3,tx);
1071 fiy3 = _mm_add_ps(fiy3,ty);
1072 fiz3 = _mm_add_ps(fiz3,tz);
1074 fjx0 = _mm_add_ps(fjx0,tx);
1075 fjy0 = _mm_add_ps(fjy0,ty);
1076 fjz0 = _mm_add_ps(fjz0,tz);
1078 fjptrA = f+j_coord_offsetA;
1079 fjptrB = f+j_coord_offsetB;
1080 fjptrC = f+j_coord_offsetC;
1081 fjptrD = f+j_coord_offsetD;
1083 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1085 /* Inner loop uses 144 flops */
1088 if(jidx<j_index_end)
1091 /* Get j neighbor index, and coordinate index */
1092 jnrlistA = jjnr[jidx];
1093 jnrlistB = jjnr[jidx+1];
1094 jnrlistC = jjnr[jidx+2];
1095 jnrlistD = jjnr[jidx+3];
1096 /* Sign of each element will be negative for non-real atoms.
1097 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1098 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1100 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1101 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1102 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1103 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1104 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1105 j_coord_offsetA = DIM*jnrA;
1106 j_coord_offsetB = DIM*jnrB;
1107 j_coord_offsetC = DIM*jnrC;
1108 j_coord_offsetD = DIM*jnrD;
1110 /* load j atom coordinates */
1111 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1112 x+j_coord_offsetC,x+j_coord_offsetD,
1115 /* Calculate displacement vector */
1116 dx00 = _mm_sub_ps(ix0,jx0);
1117 dy00 = _mm_sub_ps(iy0,jy0);
1118 dz00 = _mm_sub_ps(iz0,jz0);
1119 dx10 = _mm_sub_ps(ix1,jx0);
1120 dy10 = _mm_sub_ps(iy1,jy0);
1121 dz10 = _mm_sub_ps(iz1,jz0);
1122 dx20 = _mm_sub_ps(ix2,jx0);
1123 dy20 = _mm_sub_ps(iy2,jy0);
1124 dz20 = _mm_sub_ps(iz2,jz0);
1125 dx30 = _mm_sub_ps(ix3,jx0);
1126 dy30 = _mm_sub_ps(iy3,jy0);
1127 dz30 = _mm_sub_ps(iz3,jz0);
1129 /* Calculate squared distance and things based on it */
1130 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1131 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1132 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1133 rsq30 = gmx_mm_calc_rsq_ps(dx30,dy30,dz30);
1135 rinv10 = sse41_invsqrt_f(rsq10);
1136 rinv20 = sse41_invsqrt_f(rsq20);
1137 rinv30 = sse41_invsqrt_f(rsq30);
1139 rinvsq00 = sse41_inv_f(rsq00);
1141 /* Load parameters for j particles */
1142 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1143 charge+jnrC+0,charge+jnrD+0);
1144 vdwjidx0A = 2*vdwtype[jnrA+0];
1145 vdwjidx0B = 2*vdwtype[jnrB+0];
1146 vdwjidx0C = 2*vdwtype[jnrC+0];
1147 vdwjidx0D = 2*vdwtype[jnrD+0];
1149 fjx0 = _mm_setzero_ps();
1150 fjy0 = _mm_setzero_ps();
1151 fjz0 = _mm_setzero_ps();
1153 /**************************
1154 * CALCULATE INTERACTIONS *
1155 **************************/
1157 /* Compute parameters for interactions between i and j atoms */
1158 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1159 vdwparam+vdwioffset0+vdwjidx0B,
1160 vdwparam+vdwioffset0+vdwjidx0C,
1161 vdwparam+vdwioffset0+vdwjidx0D,
1164 /* LENNARD-JONES DISPERSION/REPULSION */
1166 rinvsix = _mm_mul_ps(_mm_mul_ps(rinvsq00,rinvsq00),rinvsq00);
1167 fvdw = _mm_mul_ps(_mm_sub_ps(_mm_mul_ps(c12_00,rinvsix),c6_00),_mm_mul_ps(rinvsix,rinvsq00));
1171 fscal = _mm_andnot_ps(dummy_mask,fscal);
1173 /* Calculate temporary vectorial force */
1174 tx = _mm_mul_ps(fscal,dx00);
1175 ty = _mm_mul_ps(fscal,dy00);
1176 tz = _mm_mul_ps(fscal,dz00);
1178 /* Update vectorial force */
1179 fix0 = _mm_add_ps(fix0,tx);
1180 fiy0 = _mm_add_ps(fiy0,ty);
1181 fiz0 = _mm_add_ps(fiz0,tz);
1183 fjx0 = _mm_add_ps(fjx0,tx);
1184 fjy0 = _mm_add_ps(fjy0,ty);
1185 fjz0 = _mm_add_ps(fjz0,tz);
1187 /**************************
1188 * CALCULATE INTERACTIONS *
1189 **************************/
1191 r10 = _mm_mul_ps(rsq10,rinv10);
1192 r10 = _mm_andnot_ps(dummy_mask,r10);
1194 /* Compute parameters for interactions between i and j atoms */
1195 qq10 = _mm_mul_ps(iq1,jq0);
1197 /* Calculate table index by multiplying r with table scale and truncate to integer */
1198 rt = _mm_mul_ps(r10,vftabscale);
1199 vfitab = _mm_cvttps_epi32(rt);
1200 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1201 vfitab = _mm_slli_epi32(vfitab,2);
1203 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1204 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1205 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1206 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1207 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1208 _MM_TRANSPOSE4_PS(Y,F,G,H);
1209 Heps = _mm_mul_ps(vfeps,H);
1210 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1211 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1212 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1216 fscal = _mm_andnot_ps(dummy_mask,fscal);
1218 /* Calculate temporary vectorial force */
1219 tx = _mm_mul_ps(fscal,dx10);
1220 ty = _mm_mul_ps(fscal,dy10);
1221 tz = _mm_mul_ps(fscal,dz10);
1223 /* Update vectorial force */
1224 fix1 = _mm_add_ps(fix1,tx);
1225 fiy1 = _mm_add_ps(fiy1,ty);
1226 fiz1 = _mm_add_ps(fiz1,tz);
1228 fjx0 = _mm_add_ps(fjx0,tx);
1229 fjy0 = _mm_add_ps(fjy0,ty);
1230 fjz0 = _mm_add_ps(fjz0,tz);
1232 /**************************
1233 * CALCULATE INTERACTIONS *
1234 **************************/
1236 r20 = _mm_mul_ps(rsq20,rinv20);
1237 r20 = _mm_andnot_ps(dummy_mask,r20);
1239 /* Compute parameters for interactions between i and j atoms */
1240 qq20 = _mm_mul_ps(iq2,jq0);
1242 /* Calculate table index by multiplying r with table scale and truncate to integer */
1243 rt = _mm_mul_ps(r20,vftabscale);
1244 vfitab = _mm_cvttps_epi32(rt);
1245 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1246 vfitab = _mm_slli_epi32(vfitab,2);
1248 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1249 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1250 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1251 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1252 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1253 _MM_TRANSPOSE4_PS(Y,F,G,H);
1254 Heps = _mm_mul_ps(vfeps,H);
1255 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1256 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1257 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1261 fscal = _mm_andnot_ps(dummy_mask,fscal);
1263 /* Calculate temporary vectorial force */
1264 tx = _mm_mul_ps(fscal,dx20);
1265 ty = _mm_mul_ps(fscal,dy20);
1266 tz = _mm_mul_ps(fscal,dz20);
1268 /* Update vectorial force */
1269 fix2 = _mm_add_ps(fix2,tx);
1270 fiy2 = _mm_add_ps(fiy2,ty);
1271 fiz2 = _mm_add_ps(fiz2,tz);
1273 fjx0 = _mm_add_ps(fjx0,tx);
1274 fjy0 = _mm_add_ps(fjy0,ty);
1275 fjz0 = _mm_add_ps(fjz0,tz);
1277 /**************************
1278 * CALCULATE INTERACTIONS *
1279 **************************/
1281 r30 = _mm_mul_ps(rsq30,rinv30);
1282 r30 = _mm_andnot_ps(dummy_mask,r30);
1284 /* Compute parameters for interactions between i and j atoms */
1285 qq30 = _mm_mul_ps(iq3,jq0);
1287 /* Calculate table index by multiplying r with table scale and truncate to integer */
1288 rt = _mm_mul_ps(r30,vftabscale);
1289 vfitab = _mm_cvttps_epi32(rt);
1290 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1291 vfitab = _mm_slli_epi32(vfitab,2);
1293 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1294 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1295 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1296 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1297 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1298 _MM_TRANSPOSE4_PS(Y,F,G,H);
1299 Heps = _mm_mul_ps(vfeps,H);
1300 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1301 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1302 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq30,FF),_mm_mul_ps(vftabscale,rinv30)));
1306 fscal = _mm_andnot_ps(dummy_mask,fscal);
1308 /* Calculate temporary vectorial force */
1309 tx = _mm_mul_ps(fscal,dx30);
1310 ty = _mm_mul_ps(fscal,dy30);
1311 tz = _mm_mul_ps(fscal,dz30);
1313 /* Update vectorial force */
1314 fix3 = _mm_add_ps(fix3,tx);
1315 fiy3 = _mm_add_ps(fiy3,ty);
1316 fiz3 = _mm_add_ps(fiz3,tz);
1318 fjx0 = _mm_add_ps(fjx0,tx);
1319 fjy0 = _mm_add_ps(fjy0,ty);
1320 fjz0 = _mm_add_ps(fjz0,tz);
1322 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1323 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1324 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1325 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1327 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1329 /* Inner loop uses 147 flops */
1332 /* End of innermost loop */
1334 gmx_mm_update_iforce_4atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1335 f+i_coord_offset,fshift+i_shift_offset);
1337 /* Increment number of inner iterations */
1338 inneriter += j_index_end - j_index_start;
1340 /* Outer loop uses 24 flops */
1343 /* Increment number of outer iterations */
1346 /* Update outer/inner flops */
1348 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W4_F,outeriter*24 + inneriter*147);