2 * This file is part of the GROMACS molecular simulation package.
4 * Copyright (c) 2012,2013,2014,2015,2017,2018, by the GROMACS development team, led by
5 * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
6 * and including many others, as listed in the AUTHORS file in the
7 * top-level source directory and at http://www.gromacs.org.
9 * GROMACS is free software; you can redistribute it and/or
10 * modify it under the terms of the GNU Lesser General Public License
11 * as published by the Free Software Foundation; either version 2.1
12 * of the License, or (at your option) any later version.
14 * GROMACS is distributed in the hope that it will be useful,
15 * but WITHOUT ANY WARRANTY; without even the implied warranty of
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
17 * Lesser General Public License for more details.
19 * You should have received a copy of the GNU Lesser General Public
20 * License along with GROMACS; if not, see
21 * http://www.gnu.org/licenses, or write to the Free Software Foundation,
22 * Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
24 * If you want to redistribute modifications to GROMACS, please
25 * consider that scientific software is very special. Version
26 * control is crucial - bugs must be traceable. We will be happy to
27 * consider code for inclusion in the official distribution, but
28 * derived work must not be called official GROMACS. Details are found
29 * in the README & COPYING files - if they are missing, get the
30 * official version at http://www.gromacs.org.
32 * To help us fund GROMACS development, we humbly ask that you cite
33 * the research papers on the package. Check out http://www.gromacs.org.
36 * Note: this file was generated by the GROMACS sse4_1_single kernel generator.
44 #include "../nb_kernel.h"
45 #include "gromacs/gmxlib/nrnb.h"
47 #include "kernelutil_x86_sse4_1_single.h"
50 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_sse4_1_single
51 * Electrostatics interaction: CubicSplineTable
52 * VdW interaction: CubicSplineTable
53 * Geometry: Water3-Particle
54 * Calculate force/pot: PotentialAndForce
57 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_sse4_1_single
58 (t_nblist * gmx_restrict nlist,
59 rvec * gmx_restrict xx,
60 rvec * gmx_restrict ff,
61 struct t_forcerec * gmx_restrict fr,
62 t_mdatoms * gmx_restrict mdatoms,
63 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
64 t_nrnb * gmx_restrict nrnb)
66 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
67 * just 0 for non-waters.
68 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
69 * jnr indices corresponding to data put in the four positions in the SIMD register.
71 int i_shift_offset,i_coord_offset,outeriter,inneriter;
72 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
73 int jnrA,jnrB,jnrC,jnrD;
74 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
75 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
76 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
78 real *shiftvec,*fshift,*x,*f;
79 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
81 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
83 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
85 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
87 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
88 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
89 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
90 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
91 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
92 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
93 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
96 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
99 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
100 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
102 __m128i ifour = _mm_set1_epi32(4);
103 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
105 __m128 dummy_mask,cutoff_mask;
106 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
107 __m128 one = _mm_set1_ps(1.0);
108 __m128 two = _mm_set1_ps(2.0);
114 jindex = nlist->jindex;
116 shiftidx = nlist->shift;
118 shiftvec = fr->shift_vec[0];
119 fshift = fr->fshift[0];
120 facel = _mm_set1_ps(fr->ic->epsfac);
121 charge = mdatoms->chargeA;
122 nvdwtype = fr->ntype;
124 vdwtype = mdatoms->typeA;
126 vftab = kernel_data->table_elec_vdw->data;
127 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
129 /* Setup water-specific parameters */
130 inr = nlist->iinr[0];
131 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
132 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
133 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
134 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
136 /* Avoid stupid compiler warnings */
137 jnrA = jnrB = jnrC = jnrD = 0;
146 for(iidx=0;iidx<4*DIM;iidx++)
151 /* Start outer loop over neighborlists */
152 for(iidx=0; iidx<nri; iidx++)
154 /* Load shift vector for this list */
155 i_shift_offset = DIM*shiftidx[iidx];
157 /* Load limits for loop over neighbors */
158 j_index_start = jindex[iidx];
159 j_index_end = jindex[iidx+1];
161 /* Get outer coordinate index */
163 i_coord_offset = DIM*inr;
165 /* Load i particle coords and add shift vector */
166 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
167 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
169 fix0 = _mm_setzero_ps();
170 fiy0 = _mm_setzero_ps();
171 fiz0 = _mm_setzero_ps();
172 fix1 = _mm_setzero_ps();
173 fiy1 = _mm_setzero_ps();
174 fiz1 = _mm_setzero_ps();
175 fix2 = _mm_setzero_ps();
176 fiy2 = _mm_setzero_ps();
177 fiz2 = _mm_setzero_ps();
179 /* Reset potential sums */
180 velecsum = _mm_setzero_ps();
181 vvdwsum = _mm_setzero_ps();
183 /* Start inner kernel loop */
184 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
187 /* Get j neighbor index, and coordinate index */
192 j_coord_offsetA = DIM*jnrA;
193 j_coord_offsetB = DIM*jnrB;
194 j_coord_offsetC = DIM*jnrC;
195 j_coord_offsetD = DIM*jnrD;
197 /* load j atom coordinates */
198 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
199 x+j_coord_offsetC,x+j_coord_offsetD,
202 /* Calculate displacement vector */
203 dx00 = _mm_sub_ps(ix0,jx0);
204 dy00 = _mm_sub_ps(iy0,jy0);
205 dz00 = _mm_sub_ps(iz0,jz0);
206 dx10 = _mm_sub_ps(ix1,jx0);
207 dy10 = _mm_sub_ps(iy1,jy0);
208 dz10 = _mm_sub_ps(iz1,jz0);
209 dx20 = _mm_sub_ps(ix2,jx0);
210 dy20 = _mm_sub_ps(iy2,jy0);
211 dz20 = _mm_sub_ps(iz2,jz0);
213 /* Calculate squared distance and things based on it */
214 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
215 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
216 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
218 rinv00 = sse41_invsqrt_f(rsq00);
219 rinv10 = sse41_invsqrt_f(rsq10);
220 rinv20 = sse41_invsqrt_f(rsq20);
222 /* Load parameters for j particles */
223 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
224 charge+jnrC+0,charge+jnrD+0);
225 vdwjidx0A = 2*vdwtype[jnrA+0];
226 vdwjidx0B = 2*vdwtype[jnrB+0];
227 vdwjidx0C = 2*vdwtype[jnrC+0];
228 vdwjidx0D = 2*vdwtype[jnrD+0];
230 fjx0 = _mm_setzero_ps();
231 fjy0 = _mm_setzero_ps();
232 fjz0 = _mm_setzero_ps();
234 /**************************
235 * CALCULATE INTERACTIONS *
236 **************************/
238 r00 = _mm_mul_ps(rsq00,rinv00);
240 /* Compute parameters for interactions between i and j atoms */
241 qq00 = _mm_mul_ps(iq0,jq0);
242 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
243 vdwparam+vdwioffset0+vdwjidx0B,
244 vdwparam+vdwioffset0+vdwjidx0C,
245 vdwparam+vdwioffset0+vdwjidx0D,
248 /* Calculate table index by multiplying r with table scale and truncate to integer */
249 rt = _mm_mul_ps(r00,vftabscale);
250 vfitab = _mm_cvttps_epi32(rt);
251 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
252 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
254 /* CUBIC SPLINE TABLE ELECTROSTATICS */
255 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
256 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
257 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
258 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
259 _MM_TRANSPOSE4_PS(Y,F,G,H);
260 Heps = _mm_mul_ps(vfeps,H);
261 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
262 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
263 velec = _mm_mul_ps(qq00,VV);
264 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
265 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
267 /* CUBIC SPLINE TABLE DISPERSION */
268 vfitab = _mm_add_epi32(vfitab,ifour);
269 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
270 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
271 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
272 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
273 _MM_TRANSPOSE4_PS(Y,F,G,H);
274 Heps = _mm_mul_ps(vfeps,H);
275 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
276 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
277 vvdw6 = _mm_mul_ps(c6_00,VV);
278 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
279 fvdw6 = _mm_mul_ps(c6_00,FF);
281 /* CUBIC SPLINE TABLE REPULSION */
282 vfitab = _mm_add_epi32(vfitab,ifour);
283 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
284 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
285 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
286 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
287 _MM_TRANSPOSE4_PS(Y,F,G,H);
288 Heps = _mm_mul_ps(vfeps,H);
289 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
290 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
291 vvdw12 = _mm_mul_ps(c12_00,VV);
292 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
293 fvdw12 = _mm_mul_ps(c12_00,FF);
294 vvdw = _mm_add_ps(vvdw12,vvdw6);
295 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
297 /* Update potential sum for this i atom from the interaction with this j atom. */
298 velecsum = _mm_add_ps(velecsum,velec);
299 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
301 fscal = _mm_add_ps(felec,fvdw);
303 /* Calculate temporary vectorial force */
304 tx = _mm_mul_ps(fscal,dx00);
305 ty = _mm_mul_ps(fscal,dy00);
306 tz = _mm_mul_ps(fscal,dz00);
308 /* Update vectorial force */
309 fix0 = _mm_add_ps(fix0,tx);
310 fiy0 = _mm_add_ps(fiy0,ty);
311 fiz0 = _mm_add_ps(fiz0,tz);
313 fjx0 = _mm_add_ps(fjx0,tx);
314 fjy0 = _mm_add_ps(fjy0,ty);
315 fjz0 = _mm_add_ps(fjz0,tz);
317 /**************************
318 * CALCULATE INTERACTIONS *
319 **************************/
321 r10 = _mm_mul_ps(rsq10,rinv10);
323 /* Compute parameters for interactions between i and j atoms */
324 qq10 = _mm_mul_ps(iq1,jq0);
326 /* Calculate table index by multiplying r with table scale and truncate to integer */
327 rt = _mm_mul_ps(r10,vftabscale);
328 vfitab = _mm_cvttps_epi32(rt);
329 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
330 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
332 /* CUBIC SPLINE TABLE ELECTROSTATICS */
333 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
334 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
335 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
336 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
337 _MM_TRANSPOSE4_PS(Y,F,G,H);
338 Heps = _mm_mul_ps(vfeps,H);
339 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
340 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
341 velec = _mm_mul_ps(qq10,VV);
342 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
343 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
345 /* Update potential sum for this i atom from the interaction with this j atom. */
346 velecsum = _mm_add_ps(velecsum,velec);
350 /* Calculate temporary vectorial force */
351 tx = _mm_mul_ps(fscal,dx10);
352 ty = _mm_mul_ps(fscal,dy10);
353 tz = _mm_mul_ps(fscal,dz10);
355 /* Update vectorial force */
356 fix1 = _mm_add_ps(fix1,tx);
357 fiy1 = _mm_add_ps(fiy1,ty);
358 fiz1 = _mm_add_ps(fiz1,tz);
360 fjx0 = _mm_add_ps(fjx0,tx);
361 fjy0 = _mm_add_ps(fjy0,ty);
362 fjz0 = _mm_add_ps(fjz0,tz);
364 /**************************
365 * CALCULATE INTERACTIONS *
366 **************************/
368 r20 = _mm_mul_ps(rsq20,rinv20);
370 /* Compute parameters for interactions between i and j atoms */
371 qq20 = _mm_mul_ps(iq2,jq0);
373 /* Calculate table index by multiplying r with table scale and truncate to integer */
374 rt = _mm_mul_ps(r20,vftabscale);
375 vfitab = _mm_cvttps_epi32(rt);
376 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
377 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
379 /* CUBIC SPLINE TABLE ELECTROSTATICS */
380 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
381 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
382 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
383 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
384 _MM_TRANSPOSE4_PS(Y,F,G,H);
385 Heps = _mm_mul_ps(vfeps,H);
386 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
387 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
388 velec = _mm_mul_ps(qq20,VV);
389 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
390 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
392 /* Update potential sum for this i atom from the interaction with this j atom. */
393 velecsum = _mm_add_ps(velecsum,velec);
397 /* Calculate temporary vectorial force */
398 tx = _mm_mul_ps(fscal,dx20);
399 ty = _mm_mul_ps(fscal,dy20);
400 tz = _mm_mul_ps(fscal,dz20);
402 /* Update vectorial force */
403 fix2 = _mm_add_ps(fix2,tx);
404 fiy2 = _mm_add_ps(fiy2,ty);
405 fiz2 = _mm_add_ps(fiz2,tz);
407 fjx0 = _mm_add_ps(fjx0,tx);
408 fjy0 = _mm_add_ps(fjy0,ty);
409 fjz0 = _mm_add_ps(fjz0,tz);
411 fjptrA = f+j_coord_offsetA;
412 fjptrB = f+j_coord_offsetB;
413 fjptrC = f+j_coord_offsetC;
414 fjptrD = f+j_coord_offsetD;
416 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
418 /* Inner loop uses 159 flops */
424 /* Get j neighbor index, and coordinate index */
425 jnrlistA = jjnr[jidx];
426 jnrlistB = jjnr[jidx+1];
427 jnrlistC = jjnr[jidx+2];
428 jnrlistD = jjnr[jidx+3];
429 /* Sign of each element will be negative for non-real atoms.
430 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
431 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
433 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
434 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
435 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
436 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
437 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
438 j_coord_offsetA = DIM*jnrA;
439 j_coord_offsetB = DIM*jnrB;
440 j_coord_offsetC = DIM*jnrC;
441 j_coord_offsetD = DIM*jnrD;
443 /* load j atom coordinates */
444 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
445 x+j_coord_offsetC,x+j_coord_offsetD,
448 /* Calculate displacement vector */
449 dx00 = _mm_sub_ps(ix0,jx0);
450 dy00 = _mm_sub_ps(iy0,jy0);
451 dz00 = _mm_sub_ps(iz0,jz0);
452 dx10 = _mm_sub_ps(ix1,jx0);
453 dy10 = _mm_sub_ps(iy1,jy0);
454 dz10 = _mm_sub_ps(iz1,jz0);
455 dx20 = _mm_sub_ps(ix2,jx0);
456 dy20 = _mm_sub_ps(iy2,jy0);
457 dz20 = _mm_sub_ps(iz2,jz0);
459 /* Calculate squared distance and things based on it */
460 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
461 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
462 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
464 rinv00 = sse41_invsqrt_f(rsq00);
465 rinv10 = sse41_invsqrt_f(rsq10);
466 rinv20 = sse41_invsqrt_f(rsq20);
468 /* Load parameters for j particles */
469 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
470 charge+jnrC+0,charge+jnrD+0);
471 vdwjidx0A = 2*vdwtype[jnrA+0];
472 vdwjidx0B = 2*vdwtype[jnrB+0];
473 vdwjidx0C = 2*vdwtype[jnrC+0];
474 vdwjidx0D = 2*vdwtype[jnrD+0];
476 fjx0 = _mm_setzero_ps();
477 fjy0 = _mm_setzero_ps();
478 fjz0 = _mm_setzero_ps();
480 /**************************
481 * CALCULATE INTERACTIONS *
482 **************************/
484 r00 = _mm_mul_ps(rsq00,rinv00);
485 r00 = _mm_andnot_ps(dummy_mask,r00);
487 /* Compute parameters for interactions between i and j atoms */
488 qq00 = _mm_mul_ps(iq0,jq0);
489 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
490 vdwparam+vdwioffset0+vdwjidx0B,
491 vdwparam+vdwioffset0+vdwjidx0C,
492 vdwparam+vdwioffset0+vdwjidx0D,
495 /* Calculate table index by multiplying r with table scale and truncate to integer */
496 rt = _mm_mul_ps(r00,vftabscale);
497 vfitab = _mm_cvttps_epi32(rt);
498 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
499 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
501 /* CUBIC SPLINE TABLE ELECTROSTATICS */
502 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
503 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
504 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
505 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
506 _MM_TRANSPOSE4_PS(Y,F,G,H);
507 Heps = _mm_mul_ps(vfeps,H);
508 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
509 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
510 velec = _mm_mul_ps(qq00,VV);
511 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
512 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
514 /* CUBIC SPLINE TABLE DISPERSION */
515 vfitab = _mm_add_epi32(vfitab,ifour);
516 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
517 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
518 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
519 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
520 _MM_TRANSPOSE4_PS(Y,F,G,H);
521 Heps = _mm_mul_ps(vfeps,H);
522 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
523 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
524 vvdw6 = _mm_mul_ps(c6_00,VV);
525 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
526 fvdw6 = _mm_mul_ps(c6_00,FF);
528 /* CUBIC SPLINE TABLE REPULSION */
529 vfitab = _mm_add_epi32(vfitab,ifour);
530 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
531 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
532 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
533 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
534 _MM_TRANSPOSE4_PS(Y,F,G,H);
535 Heps = _mm_mul_ps(vfeps,H);
536 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
537 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
538 vvdw12 = _mm_mul_ps(c12_00,VV);
539 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
540 fvdw12 = _mm_mul_ps(c12_00,FF);
541 vvdw = _mm_add_ps(vvdw12,vvdw6);
542 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
544 /* Update potential sum for this i atom from the interaction with this j atom. */
545 velec = _mm_andnot_ps(dummy_mask,velec);
546 velecsum = _mm_add_ps(velecsum,velec);
547 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
548 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
550 fscal = _mm_add_ps(felec,fvdw);
552 fscal = _mm_andnot_ps(dummy_mask,fscal);
554 /* Calculate temporary vectorial force */
555 tx = _mm_mul_ps(fscal,dx00);
556 ty = _mm_mul_ps(fscal,dy00);
557 tz = _mm_mul_ps(fscal,dz00);
559 /* Update vectorial force */
560 fix0 = _mm_add_ps(fix0,tx);
561 fiy0 = _mm_add_ps(fiy0,ty);
562 fiz0 = _mm_add_ps(fiz0,tz);
564 fjx0 = _mm_add_ps(fjx0,tx);
565 fjy0 = _mm_add_ps(fjy0,ty);
566 fjz0 = _mm_add_ps(fjz0,tz);
568 /**************************
569 * CALCULATE INTERACTIONS *
570 **************************/
572 r10 = _mm_mul_ps(rsq10,rinv10);
573 r10 = _mm_andnot_ps(dummy_mask,r10);
575 /* Compute parameters for interactions between i and j atoms */
576 qq10 = _mm_mul_ps(iq1,jq0);
578 /* Calculate table index by multiplying r with table scale and truncate to integer */
579 rt = _mm_mul_ps(r10,vftabscale);
580 vfitab = _mm_cvttps_epi32(rt);
581 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
582 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
584 /* CUBIC SPLINE TABLE ELECTROSTATICS */
585 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
586 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
587 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
588 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
589 _MM_TRANSPOSE4_PS(Y,F,G,H);
590 Heps = _mm_mul_ps(vfeps,H);
591 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
592 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
593 velec = _mm_mul_ps(qq10,VV);
594 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
595 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
597 /* Update potential sum for this i atom from the interaction with this j atom. */
598 velec = _mm_andnot_ps(dummy_mask,velec);
599 velecsum = _mm_add_ps(velecsum,velec);
603 fscal = _mm_andnot_ps(dummy_mask,fscal);
605 /* Calculate temporary vectorial force */
606 tx = _mm_mul_ps(fscal,dx10);
607 ty = _mm_mul_ps(fscal,dy10);
608 tz = _mm_mul_ps(fscal,dz10);
610 /* Update vectorial force */
611 fix1 = _mm_add_ps(fix1,tx);
612 fiy1 = _mm_add_ps(fiy1,ty);
613 fiz1 = _mm_add_ps(fiz1,tz);
615 fjx0 = _mm_add_ps(fjx0,tx);
616 fjy0 = _mm_add_ps(fjy0,ty);
617 fjz0 = _mm_add_ps(fjz0,tz);
619 /**************************
620 * CALCULATE INTERACTIONS *
621 **************************/
623 r20 = _mm_mul_ps(rsq20,rinv20);
624 r20 = _mm_andnot_ps(dummy_mask,r20);
626 /* Compute parameters for interactions between i and j atoms */
627 qq20 = _mm_mul_ps(iq2,jq0);
629 /* Calculate table index by multiplying r with table scale and truncate to integer */
630 rt = _mm_mul_ps(r20,vftabscale);
631 vfitab = _mm_cvttps_epi32(rt);
632 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
633 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
635 /* CUBIC SPLINE TABLE ELECTROSTATICS */
636 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
637 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
638 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
639 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
640 _MM_TRANSPOSE4_PS(Y,F,G,H);
641 Heps = _mm_mul_ps(vfeps,H);
642 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
643 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
644 velec = _mm_mul_ps(qq20,VV);
645 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
646 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
648 /* Update potential sum for this i atom from the interaction with this j atom. */
649 velec = _mm_andnot_ps(dummy_mask,velec);
650 velecsum = _mm_add_ps(velecsum,velec);
654 fscal = _mm_andnot_ps(dummy_mask,fscal);
656 /* Calculate temporary vectorial force */
657 tx = _mm_mul_ps(fscal,dx20);
658 ty = _mm_mul_ps(fscal,dy20);
659 tz = _mm_mul_ps(fscal,dz20);
661 /* Update vectorial force */
662 fix2 = _mm_add_ps(fix2,tx);
663 fiy2 = _mm_add_ps(fiy2,ty);
664 fiz2 = _mm_add_ps(fiz2,tz);
666 fjx0 = _mm_add_ps(fjx0,tx);
667 fjy0 = _mm_add_ps(fjy0,ty);
668 fjz0 = _mm_add_ps(fjz0,tz);
670 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
671 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
672 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
673 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
675 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
677 /* Inner loop uses 162 flops */
680 /* End of innermost loop */
682 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
683 f+i_coord_offset,fshift+i_shift_offset);
686 /* Update potential energies */
687 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
688 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
690 /* Increment number of inner iterations */
691 inneriter += j_index_end - j_index_start;
693 /* Outer loop uses 20 flops */
696 /* Increment number of outer iterations */
699 /* Update outer/inner flops */
701 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*162);
704 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_sse4_1_single
705 * Electrostatics interaction: CubicSplineTable
706 * VdW interaction: CubicSplineTable
707 * Geometry: Water3-Particle
708 * Calculate force/pot: Force
711 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_sse4_1_single
712 (t_nblist * gmx_restrict nlist,
713 rvec * gmx_restrict xx,
714 rvec * gmx_restrict ff,
715 struct t_forcerec * gmx_restrict fr,
716 t_mdatoms * gmx_restrict mdatoms,
717 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
718 t_nrnb * gmx_restrict nrnb)
720 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
721 * just 0 for non-waters.
722 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
723 * jnr indices corresponding to data put in the four positions in the SIMD register.
725 int i_shift_offset,i_coord_offset,outeriter,inneriter;
726 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
727 int jnrA,jnrB,jnrC,jnrD;
728 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
729 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
730 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
732 real *shiftvec,*fshift,*x,*f;
733 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
735 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
737 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
739 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
741 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
742 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
743 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
744 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
745 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
746 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
747 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
750 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
753 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
754 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
756 __m128i ifour = _mm_set1_epi32(4);
757 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
759 __m128 dummy_mask,cutoff_mask;
760 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
761 __m128 one = _mm_set1_ps(1.0);
762 __m128 two = _mm_set1_ps(2.0);
768 jindex = nlist->jindex;
770 shiftidx = nlist->shift;
772 shiftvec = fr->shift_vec[0];
773 fshift = fr->fshift[0];
774 facel = _mm_set1_ps(fr->ic->epsfac);
775 charge = mdatoms->chargeA;
776 nvdwtype = fr->ntype;
778 vdwtype = mdatoms->typeA;
780 vftab = kernel_data->table_elec_vdw->data;
781 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
783 /* Setup water-specific parameters */
784 inr = nlist->iinr[0];
785 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
786 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
787 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
788 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
790 /* Avoid stupid compiler warnings */
791 jnrA = jnrB = jnrC = jnrD = 0;
800 for(iidx=0;iidx<4*DIM;iidx++)
805 /* Start outer loop over neighborlists */
806 for(iidx=0; iidx<nri; iidx++)
808 /* Load shift vector for this list */
809 i_shift_offset = DIM*shiftidx[iidx];
811 /* Load limits for loop over neighbors */
812 j_index_start = jindex[iidx];
813 j_index_end = jindex[iidx+1];
815 /* Get outer coordinate index */
817 i_coord_offset = DIM*inr;
819 /* Load i particle coords and add shift vector */
820 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
821 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
823 fix0 = _mm_setzero_ps();
824 fiy0 = _mm_setzero_ps();
825 fiz0 = _mm_setzero_ps();
826 fix1 = _mm_setzero_ps();
827 fiy1 = _mm_setzero_ps();
828 fiz1 = _mm_setzero_ps();
829 fix2 = _mm_setzero_ps();
830 fiy2 = _mm_setzero_ps();
831 fiz2 = _mm_setzero_ps();
833 /* Start inner kernel loop */
834 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
837 /* Get j neighbor index, and coordinate index */
842 j_coord_offsetA = DIM*jnrA;
843 j_coord_offsetB = DIM*jnrB;
844 j_coord_offsetC = DIM*jnrC;
845 j_coord_offsetD = DIM*jnrD;
847 /* load j atom coordinates */
848 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
849 x+j_coord_offsetC,x+j_coord_offsetD,
852 /* Calculate displacement vector */
853 dx00 = _mm_sub_ps(ix0,jx0);
854 dy00 = _mm_sub_ps(iy0,jy0);
855 dz00 = _mm_sub_ps(iz0,jz0);
856 dx10 = _mm_sub_ps(ix1,jx0);
857 dy10 = _mm_sub_ps(iy1,jy0);
858 dz10 = _mm_sub_ps(iz1,jz0);
859 dx20 = _mm_sub_ps(ix2,jx0);
860 dy20 = _mm_sub_ps(iy2,jy0);
861 dz20 = _mm_sub_ps(iz2,jz0);
863 /* Calculate squared distance and things based on it */
864 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
865 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
866 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
868 rinv00 = sse41_invsqrt_f(rsq00);
869 rinv10 = sse41_invsqrt_f(rsq10);
870 rinv20 = sse41_invsqrt_f(rsq20);
872 /* Load parameters for j particles */
873 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
874 charge+jnrC+0,charge+jnrD+0);
875 vdwjidx0A = 2*vdwtype[jnrA+0];
876 vdwjidx0B = 2*vdwtype[jnrB+0];
877 vdwjidx0C = 2*vdwtype[jnrC+0];
878 vdwjidx0D = 2*vdwtype[jnrD+0];
880 fjx0 = _mm_setzero_ps();
881 fjy0 = _mm_setzero_ps();
882 fjz0 = _mm_setzero_ps();
884 /**************************
885 * CALCULATE INTERACTIONS *
886 **************************/
888 r00 = _mm_mul_ps(rsq00,rinv00);
890 /* Compute parameters for interactions between i and j atoms */
891 qq00 = _mm_mul_ps(iq0,jq0);
892 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
893 vdwparam+vdwioffset0+vdwjidx0B,
894 vdwparam+vdwioffset0+vdwjidx0C,
895 vdwparam+vdwioffset0+vdwjidx0D,
898 /* Calculate table index by multiplying r with table scale and truncate to integer */
899 rt = _mm_mul_ps(r00,vftabscale);
900 vfitab = _mm_cvttps_epi32(rt);
901 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
902 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
904 /* CUBIC SPLINE TABLE ELECTROSTATICS */
905 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
906 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
907 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
908 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
909 _MM_TRANSPOSE4_PS(Y,F,G,H);
910 Heps = _mm_mul_ps(vfeps,H);
911 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
912 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
913 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
915 /* CUBIC SPLINE TABLE DISPERSION */
916 vfitab = _mm_add_epi32(vfitab,ifour);
917 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
918 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
919 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
920 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
921 _MM_TRANSPOSE4_PS(Y,F,G,H);
922 Heps = _mm_mul_ps(vfeps,H);
923 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
924 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
925 fvdw6 = _mm_mul_ps(c6_00,FF);
927 /* CUBIC SPLINE TABLE REPULSION */
928 vfitab = _mm_add_epi32(vfitab,ifour);
929 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
930 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
931 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
932 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
933 _MM_TRANSPOSE4_PS(Y,F,G,H);
934 Heps = _mm_mul_ps(vfeps,H);
935 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
936 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
937 fvdw12 = _mm_mul_ps(c12_00,FF);
938 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
940 fscal = _mm_add_ps(felec,fvdw);
942 /* Calculate temporary vectorial force */
943 tx = _mm_mul_ps(fscal,dx00);
944 ty = _mm_mul_ps(fscal,dy00);
945 tz = _mm_mul_ps(fscal,dz00);
947 /* Update vectorial force */
948 fix0 = _mm_add_ps(fix0,tx);
949 fiy0 = _mm_add_ps(fiy0,ty);
950 fiz0 = _mm_add_ps(fiz0,tz);
952 fjx0 = _mm_add_ps(fjx0,tx);
953 fjy0 = _mm_add_ps(fjy0,ty);
954 fjz0 = _mm_add_ps(fjz0,tz);
956 /**************************
957 * CALCULATE INTERACTIONS *
958 **************************/
960 r10 = _mm_mul_ps(rsq10,rinv10);
962 /* Compute parameters for interactions between i and j atoms */
963 qq10 = _mm_mul_ps(iq1,jq0);
965 /* Calculate table index by multiplying r with table scale and truncate to integer */
966 rt = _mm_mul_ps(r10,vftabscale);
967 vfitab = _mm_cvttps_epi32(rt);
968 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
969 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
971 /* CUBIC SPLINE TABLE ELECTROSTATICS */
972 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
973 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
974 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
975 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
976 _MM_TRANSPOSE4_PS(Y,F,G,H);
977 Heps = _mm_mul_ps(vfeps,H);
978 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
979 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
980 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
984 /* Calculate temporary vectorial force */
985 tx = _mm_mul_ps(fscal,dx10);
986 ty = _mm_mul_ps(fscal,dy10);
987 tz = _mm_mul_ps(fscal,dz10);
989 /* Update vectorial force */
990 fix1 = _mm_add_ps(fix1,tx);
991 fiy1 = _mm_add_ps(fiy1,ty);
992 fiz1 = _mm_add_ps(fiz1,tz);
994 fjx0 = _mm_add_ps(fjx0,tx);
995 fjy0 = _mm_add_ps(fjy0,ty);
996 fjz0 = _mm_add_ps(fjz0,tz);
998 /**************************
999 * CALCULATE INTERACTIONS *
1000 **************************/
1002 r20 = _mm_mul_ps(rsq20,rinv20);
1004 /* Compute parameters for interactions between i and j atoms */
1005 qq20 = _mm_mul_ps(iq2,jq0);
1007 /* Calculate table index by multiplying r with table scale and truncate to integer */
1008 rt = _mm_mul_ps(r20,vftabscale);
1009 vfitab = _mm_cvttps_epi32(rt);
1010 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1011 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1013 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1014 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1015 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1016 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1017 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1018 _MM_TRANSPOSE4_PS(Y,F,G,H);
1019 Heps = _mm_mul_ps(vfeps,H);
1020 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1021 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1022 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1026 /* Calculate temporary vectorial force */
1027 tx = _mm_mul_ps(fscal,dx20);
1028 ty = _mm_mul_ps(fscal,dy20);
1029 tz = _mm_mul_ps(fscal,dz20);
1031 /* Update vectorial force */
1032 fix2 = _mm_add_ps(fix2,tx);
1033 fiy2 = _mm_add_ps(fiy2,ty);
1034 fiz2 = _mm_add_ps(fiz2,tz);
1036 fjx0 = _mm_add_ps(fjx0,tx);
1037 fjy0 = _mm_add_ps(fjy0,ty);
1038 fjz0 = _mm_add_ps(fjz0,tz);
1040 fjptrA = f+j_coord_offsetA;
1041 fjptrB = f+j_coord_offsetB;
1042 fjptrC = f+j_coord_offsetC;
1043 fjptrD = f+j_coord_offsetD;
1045 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1047 /* Inner loop uses 139 flops */
1050 if(jidx<j_index_end)
1053 /* Get j neighbor index, and coordinate index */
1054 jnrlistA = jjnr[jidx];
1055 jnrlistB = jjnr[jidx+1];
1056 jnrlistC = jjnr[jidx+2];
1057 jnrlistD = jjnr[jidx+3];
1058 /* Sign of each element will be negative for non-real atoms.
1059 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1060 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1062 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1063 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1064 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1065 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1066 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1067 j_coord_offsetA = DIM*jnrA;
1068 j_coord_offsetB = DIM*jnrB;
1069 j_coord_offsetC = DIM*jnrC;
1070 j_coord_offsetD = DIM*jnrD;
1072 /* load j atom coordinates */
1073 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1074 x+j_coord_offsetC,x+j_coord_offsetD,
1077 /* Calculate displacement vector */
1078 dx00 = _mm_sub_ps(ix0,jx0);
1079 dy00 = _mm_sub_ps(iy0,jy0);
1080 dz00 = _mm_sub_ps(iz0,jz0);
1081 dx10 = _mm_sub_ps(ix1,jx0);
1082 dy10 = _mm_sub_ps(iy1,jy0);
1083 dz10 = _mm_sub_ps(iz1,jz0);
1084 dx20 = _mm_sub_ps(ix2,jx0);
1085 dy20 = _mm_sub_ps(iy2,jy0);
1086 dz20 = _mm_sub_ps(iz2,jz0);
1088 /* Calculate squared distance and things based on it */
1089 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1090 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1091 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1093 rinv00 = sse41_invsqrt_f(rsq00);
1094 rinv10 = sse41_invsqrt_f(rsq10);
1095 rinv20 = sse41_invsqrt_f(rsq20);
1097 /* Load parameters for j particles */
1098 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1099 charge+jnrC+0,charge+jnrD+0);
1100 vdwjidx0A = 2*vdwtype[jnrA+0];
1101 vdwjidx0B = 2*vdwtype[jnrB+0];
1102 vdwjidx0C = 2*vdwtype[jnrC+0];
1103 vdwjidx0D = 2*vdwtype[jnrD+0];
1105 fjx0 = _mm_setzero_ps();
1106 fjy0 = _mm_setzero_ps();
1107 fjz0 = _mm_setzero_ps();
1109 /**************************
1110 * CALCULATE INTERACTIONS *
1111 **************************/
1113 r00 = _mm_mul_ps(rsq00,rinv00);
1114 r00 = _mm_andnot_ps(dummy_mask,r00);
1116 /* Compute parameters for interactions between i and j atoms */
1117 qq00 = _mm_mul_ps(iq0,jq0);
1118 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1119 vdwparam+vdwioffset0+vdwjidx0B,
1120 vdwparam+vdwioffset0+vdwjidx0C,
1121 vdwparam+vdwioffset0+vdwjidx0D,
1124 /* Calculate table index by multiplying r with table scale and truncate to integer */
1125 rt = _mm_mul_ps(r00,vftabscale);
1126 vfitab = _mm_cvttps_epi32(rt);
1127 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1128 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1130 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1131 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1132 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1133 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1134 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1135 _MM_TRANSPOSE4_PS(Y,F,G,H);
1136 Heps = _mm_mul_ps(vfeps,H);
1137 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1138 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1139 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
1141 /* CUBIC SPLINE TABLE DISPERSION */
1142 vfitab = _mm_add_epi32(vfitab,ifour);
1143 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1144 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1145 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1146 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1147 _MM_TRANSPOSE4_PS(Y,F,G,H);
1148 Heps = _mm_mul_ps(vfeps,H);
1149 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1150 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1151 fvdw6 = _mm_mul_ps(c6_00,FF);
1153 /* CUBIC SPLINE TABLE REPULSION */
1154 vfitab = _mm_add_epi32(vfitab,ifour);
1155 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1156 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1157 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1158 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1159 _MM_TRANSPOSE4_PS(Y,F,G,H);
1160 Heps = _mm_mul_ps(vfeps,H);
1161 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1162 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1163 fvdw12 = _mm_mul_ps(c12_00,FF);
1164 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1166 fscal = _mm_add_ps(felec,fvdw);
1168 fscal = _mm_andnot_ps(dummy_mask,fscal);
1170 /* Calculate temporary vectorial force */
1171 tx = _mm_mul_ps(fscal,dx00);
1172 ty = _mm_mul_ps(fscal,dy00);
1173 tz = _mm_mul_ps(fscal,dz00);
1175 /* Update vectorial force */
1176 fix0 = _mm_add_ps(fix0,tx);
1177 fiy0 = _mm_add_ps(fiy0,ty);
1178 fiz0 = _mm_add_ps(fiz0,tz);
1180 fjx0 = _mm_add_ps(fjx0,tx);
1181 fjy0 = _mm_add_ps(fjy0,ty);
1182 fjz0 = _mm_add_ps(fjz0,tz);
1184 /**************************
1185 * CALCULATE INTERACTIONS *
1186 **************************/
1188 r10 = _mm_mul_ps(rsq10,rinv10);
1189 r10 = _mm_andnot_ps(dummy_mask,r10);
1191 /* Compute parameters for interactions between i and j atoms */
1192 qq10 = _mm_mul_ps(iq1,jq0);
1194 /* Calculate table index by multiplying r with table scale and truncate to integer */
1195 rt = _mm_mul_ps(r10,vftabscale);
1196 vfitab = _mm_cvttps_epi32(rt);
1197 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1198 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1200 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1201 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1202 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1203 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1204 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1205 _MM_TRANSPOSE4_PS(Y,F,G,H);
1206 Heps = _mm_mul_ps(vfeps,H);
1207 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1208 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1209 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1213 fscal = _mm_andnot_ps(dummy_mask,fscal);
1215 /* Calculate temporary vectorial force */
1216 tx = _mm_mul_ps(fscal,dx10);
1217 ty = _mm_mul_ps(fscal,dy10);
1218 tz = _mm_mul_ps(fscal,dz10);
1220 /* Update vectorial force */
1221 fix1 = _mm_add_ps(fix1,tx);
1222 fiy1 = _mm_add_ps(fiy1,ty);
1223 fiz1 = _mm_add_ps(fiz1,tz);
1225 fjx0 = _mm_add_ps(fjx0,tx);
1226 fjy0 = _mm_add_ps(fjy0,ty);
1227 fjz0 = _mm_add_ps(fjz0,tz);
1229 /**************************
1230 * CALCULATE INTERACTIONS *
1231 **************************/
1233 r20 = _mm_mul_ps(rsq20,rinv20);
1234 r20 = _mm_andnot_ps(dummy_mask,r20);
1236 /* Compute parameters for interactions between i and j atoms */
1237 qq20 = _mm_mul_ps(iq2,jq0);
1239 /* Calculate table index by multiplying r with table scale and truncate to integer */
1240 rt = _mm_mul_ps(r20,vftabscale);
1241 vfitab = _mm_cvttps_epi32(rt);
1242 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1243 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1245 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1246 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1247 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1248 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1249 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1250 _MM_TRANSPOSE4_PS(Y,F,G,H);
1251 Heps = _mm_mul_ps(vfeps,H);
1252 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1253 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1254 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1258 fscal = _mm_andnot_ps(dummy_mask,fscal);
1260 /* Calculate temporary vectorial force */
1261 tx = _mm_mul_ps(fscal,dx20);
1262 ty = _mm_mul_ps(fscal,dy20);
1263 tz = _mm_mul_ps(fscal,dz20);
1265 /* Update vectorial force */
1266 fix2 = _mm_add_ps(fix2,tx);
1267 fiy2 = _mm_add_ps(fiy2,ty);
1268 fiz2 = _mm_add_ps(fiz2,tz);
1270 fjx0 = _mm_add_ps(fjx0,tx);
1271 fjy0 = _mm_add_ps(fjy0,ty);
1272 fjz0 = _mm_add_ps(fjz0,tz);
1274 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1275 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1276 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1277 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1279 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1281 /* Inner loop uses 142 flops */
1284 /* End of innermost loop */
1286 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1287 f+i_coord_offset,fshift+i_shift_offset);
1289 /* Increment number of inner iterations */
1290 inneriter += j_index_end - j_index_start;
1292 /* Outer loop uses 18 flops */
1295 /* Increment number of outer iterations */
1298 /* Update outer/inner flops */
1300 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*142);