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36 * Note: this file was generated by the GROMACS sse4_1_single kernel generator.
42 #include "../nb_kernel.h"
43 #include "gromacs/legacyheaders/types/simple.h"
44 #include "gromacs/math/vec.h"
45 #include "gromacs/legacyheaders/nrnb.h"
47 #include "gromacs/simd/math_x86_sse4_1_single.h"
48 #include "kernelutil_x86_sse4_1_single.h"
51 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_sse4_1_single
52 * Electrostatics interaction: CubicSplineTable
53 * VdW interaction: CubicSplineTable
54 * Geometry: Water3-Particle
55 * Calculate force/pot: PotentialAndForce
58 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_VF_sse4_1_single
59 (t_nblist * gmx_restrict nlist,
60 rvec * gmx_restrict xx,
61 rvec * gmx_restrict ff,
62 t_forcerec * gmx_restrict fr,
63 t_mdatoms * gmx_restrict mdatoms,
64 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
65 t_nrnb * gmx_restrict nrnb)
67 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
68 * just 0 for non-waters.
69 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
70 * jnr indices corresponding to data put in the four positions in the SIMD register.
72 int i_shift_offset,i_coord_offset,outeriter,inneriter;
73 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
74 int jnrA,jnrB,jnrC,jnrD;
75 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
76 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
77 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
79 real *shiftvec,*fshift,*x,*f;
80 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
82 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
84 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
86 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
88 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
89 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
90 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
91 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
92 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
93 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
94 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
97 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
100 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
101 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
103 __m128i ifour = _mm_set1_epi32(4);
104 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
106 __m128 dummy_mask,cutoff_mask;
107 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
108 __m128 one = _mm_set1_ps(1.0);
109 __m128 two = _mm_set1_ps(2.0);
115 jindex = nlist->jindex;
117 shiftidx = nlist->shift;
119 shiftvec = fr->shift_vec[0];
120 fshift = fr->fshift[0];
121 facel = _mm_set1_ps(fr->epsfac);
122 charge = mdatoms->chargeA;
123 nvdwtype = fr->ntype;
125 vdwtype = mdatoms->typeA;
127 vftab = kernel_data->table_elec_vdw->data;
128 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
130 /* Setup water-specific parameters */
131 inr = nlist->iinr[0];
132 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
133 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
134 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
135 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
137 /* Avoid stupid compiler warnings */
138 jnrA = jnrB = jnrC = jnrD = 0;
147 for(iidx=0;iidx<4*DIM;iidx++)
152 /* Start outer loop over neighborlists */
153 for(iidx=0; iidx<nri; iidx++)
155 /* Load shift vector for this list */
156 i_shift_offset = DIM*shiftidx[iidx];
158 /* Load limits for loop over neighbors */
159 j_index_start = jindex[iidx];
160 j_index_end = jindex[iidx+1];
162 /* Get outer coordinate index */
164 i_coord_offset = DIM*inr;
166 /* Load i particle coords and add shift vector */
167 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
168 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
170 fix0 = _mm_setzero_ps();
171 fiy0 = _mm_setzero_ps();
172 fiz0 = _mm_setzero_ps();
173 fix1 = _mm_setzero_ps();
174 fiy1 = _mm_setzero_ps();
175 fiz1 = _mm_setzero_ps();
176 fix2 = _mm_setzero_ps();
177 fiy2 = _mm_setzero_ps();
178 fiz2 = _mm_setzero_ps();
180 /* Reset potential sums */
181 velecsum = _mm_setzero_ps();
182 vvdwsum = _mm_setzero_ps();
184 /* Start inner kernel loop */
185 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
188 /* Get j neighbor index, and coordinate index */
193 j_coord_offsetA = DIM*jnrA;
194 j_coord_offsetB = DIM*jnrB;
195 j_coord_offsetC = DIM*jnrC;
196 j_coord_offsetD = DIM*jnrD;
198 /* load j atom coordinates */
199 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
200 x+j_coord_offsetC,x+j_coord_offsetD,
203 /* Calculate displacement vector */
204 dx00 = _mm_sub_ps(ix0,jx0);
205 dy00 = _mm_sub_ps(iy0,jy0);
206 dz00 = _mm_sub_ps(iz0,jz0);
207 dx10 = _mm_sub_ps(ix1,jx0);
208 dy10 = _mm_sub_ps(iy1,jy0);
209 dz10 = _mm_sub_ps(iz1,jz0);
210 dx20 = _mm_sub_ps(ix2,jx0);
211 dy20 = _mm_sub_ps(iy2,jy0);
212 dz20 = _mm_sub_ps(iz2,jz0);
214 /* Calculate squared distance and things based on it */
215 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
216 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
217 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
219 rinv00 = gmx_mm_invsqrt_ps(rsq00);
220 rinv10 = gmx_mm_invsqrt_ps(rsq10);
221 rinv20 = gmx_mm_invsqrt_ps(rsq20);
223 /* Load parameters for j particles */
224 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
225 charge+jnrC+0,charge+jnrD+0);
226 vdwjidx0A = 2*vdwtype[jnrA+0];
227 vdwjidx0B = 2*vdwtype[jnrB+0];
228 vdwjidx0C = 2*vdwtype[jnrC+0];
229 vdwjidx0D = 2*vdwtype[jnrD+0];
231 fjx0 = _mm_setzero_ps();
232 fjy0 = _mm_setzero_ps();
233 fjz0 = _mm_setzero_ps();
235 /**************************
236 * CALCULATE INTERACTIONS *
237 **************************/
239 r00 = _mm_mul_ps(rsq00,rinv00);
241 /* Compute parameters for interactions between i and j atoms */
242 qq00 = _mm_mul_ps(iq0,jq0);
243 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
244 vdwparam+vdwioffset0+vdwjidx0B,
245 vdwparam+vdwioffset0+vdwjidx0C,
246 vdwparam+vdwioffset0+vdwjidx0D,
249 /* Calculate table index by multiplying r with table scale and truncate to integer */
250 rt = _mm_mul_ps(r00,vftabscale);
251 vfitab = _mm_cvttps_epi32(rt);
252 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
253 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
255 /* CUBIC SPLINE TABLE ELECTROSTATICS */
256 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
257 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
258 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
259 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
260 _MM_TRANSPOSE4_PS(Y,F,G,H);
261 Heps = _mm_mul_ps(vfeps,H);
262 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
263 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
264 velec = _mm_mul_ps(qq00,VV);
265 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
266 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
268 /* CUBIC SPLINE TABLE DISPERSION */
269 vfitab = _mm_add_epi32(vfitab,ifour);
270 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
271 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
272 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
273 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
274 _MM_TRANSPOSE4_PS(Y,F,G,H);
275 Heps = _mm_mul_ps(vfeps,H);
276 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
277 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
278 vvdw6 = _mm_mul_ps(c6_00,VV);
279 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
280 fvdw6 = _mm_mul_ps(c6_00,FF);
282 /* CUBIC SPLINE TABLE REPULSION */
283 vfitab = _mm_add_epi32(vfitab,ifour);
284 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
285 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
286 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
287 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
288 _MM_TRANSPOSE4_PS(Y,F,G,H);
289 Heps = _mm_mul_ps(vfeps,H);
290 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
291 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
292 vvdw12 = _mm_mul_ps(c12_00,VV);
293 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
294 fvdw12 = _mm_mul_ps(c12_00,FF);
295 vvdw = _mm_add_ps(vvdw12,vvdw6);
296 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
298 /* Update potential sum for this i atom from the interaction with this j atom. */
299 velecsum = _mm_add_ps(velecsum,velec);
300 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
302 fscal = _mm_add_ps(felec,fvdw);
304 /* Calculate temporary vectorial force */
305 tx = _mm_mul_ps(fscal,dx00);
306 ty = _mm_mul_ps(fscal,dy00);
307 tz = _mm_mul_ps(fscal,dz00);
309 /* Update vectorial force */
310 fix0 = _mm_add_ps(fix0,tx);
311 fiy0 = _mm_add_ps(fiy0,ty);
312 fiz0 = _mm_add_ps(fiz0,tz);
314 fjx0 = _mm_add_ps(fjx0,tx);
315 fjy0 = _mm_add_ps(fjy0,ty);
316 fjz0 = _mm_add_ps(fjz0,tz);
318 /**************************
319 * CALCULATE INTERACTIONS *
320 **************************/
322 r10 = _mm_mul_ps(rsq10,rinv10);
324 /* Compute parameters for interactions between i and j atoms */
325 qq10 = _mm_mul_ps(iq1,jq0);
327 /* Calculate table index by multiplying r with table scale and truncate to integer */
328 rt = _mm_mul_ps(r10,vftabscale);
329 vfitab = _mm_cvttps_epi32(rt);
330 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
331 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
333 /* CUBIC SPLINE TABLE ELECTROSTATICS */
334 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
335 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
336 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
337 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
338 _MM_TRANSPOSE4_PS(Y,F,G,H);
339 Heps = _mm_mul_ps(vfeps,H);
340 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
341 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
342 velec = _mm_mul_ps(qq10,VV);
343 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
344 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
346 /* Update potential sum for this i atom from the interaction with this j atom. */
347 velecsum = _mm_add_ps(velecsum,velec);
351 /* Calculate temporary vectorial force */
352 tx = _mm_mul_ps(fscal,dx10);
353 ty = _mm_mul_ps(fscal,dy10);
354 tz = _mm_mul_ps(fscal,dz10);
356 /* Update vectorial force */
357 fix1 = _mm_add_ps(fix1,tx);
358 fiy1 = _mm_add_ps(fiy1,ty);
359 fiz1 = _mm_add_ps(fiz1,tz);
361 fjx0 = _mm_add_ps(fjx0,tx);
362 fjy0 = _mm_add_ps(fjy0,ty);
363 fjz0 = _mm_add_ps(fjz0,tz);
365 /**************************
366 * CALCULATE INTERACTIONS *
367 **************************/
369 r20 = _mm_mul_ps(rsq20,rinv20);
371 /* Compute parameters for interactions between i and j atoms */
372 qq20 = _mm_mul_ps(iq2,jq0);
374 /* Calculate table index by multiplying r with table scale and truncate to integer */
375 rt = _mm_mul_ps(r20,vftabscale);
376 vfitab = _mm_cvttps_epi32(rt);
377 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
378 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
380 /* CUBIC SPLINE TABLE ELECTROSTATICS */
381 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
382 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
383 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
384 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
385 _MM_TRANSPOSE4_PS(Y,F,G,H);
386 Heps = _mm_mul_ps(vfeps,H);
387 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
388 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
389 velec = _mm_mul_ps(qq20,VV);
390 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
391 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
393 /* Update potential sum for this i atom from the interaction with this j atom. */
394 velecsum = _mm_add_ps(velecsum,velec);
398 /* Calculate temporary vectorial force */
399 tx = _mm_mul_ps(fscal,dx20);
400 ty = _mm_mul_ps(fscal,dy20);
401 tz = _mm_mul_ps(fscal,dz20);
403 /* Update vectorial force */
404 fix2 = _mm_add_ps(fix2,tx);
405 fiy2 = _mm_add_ps(fiy2,ty);
406 fiz2 = _mm_add_ps(fiz2,tz);
408 fjx0 = _mm_add_ps(fjx0,tx);
409 fjy0 = _mm_add_ps(fjy0,ty);
410 fjz0 = _mm_add_ps(fjz0,tz);
412 fjptrA = f+j_coord_offsetA;
413 fjptrB = f+j_coord_offsetB;
414 fjptrC = f+j_coord_offsetC;
415 fjptrD = f+j_coord_offsetD;
417 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
419 /* Inner loop uses 159 flops */
425 /* Get j neighbor index, and coordinate index */
426 jnrlistA = jjnr[jidx];
427 jnrlistB = jjnr[jidx+1];
428 jnrlistC = jjnr[jidx+2];
429 jnrlistD = jjnr[jidx+3];
430 /* Sign of each element will be negative for non-real atoms.
431 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
432 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
434 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
435 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
436 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
437 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
438 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
439 j_coord_offsetA = DIM*jnrA;
440 j_coord_offsetB = DIM*jnrB;
441 j_coord_offsetC = DIM*jnrC;
442 j_coord_offsetD = DIM*jnrD;
444 /* load j atom coordinates */
445 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
446 x+j_coord_offsetC,x+j_coord_offsetD,
449 /* Calculate displacement vector */
450 dx00 = _mm_sub_ps(ix0,jx0);
451 dy00 = _mm_sub_ps(iy0,jy0);
452 dz00 = _mm_sub_ps(iz0,jz0);
453 dx10 = _mm_sub_ps(ix1,jx0);
454 dy10 = _mm_sub_ps(iy1,jy0);
455 dz10 = _mm_sub_ps(iz1,jz0);
456 dx20 = _mm_sub_ps(ix2,jx0);
457 dy20 = _mm_sub_ps(iy2,jy0);
458 dz20 = _mm_sub_ps(iz2,jz0);
460 /* Calculate squared distance and things based on it */
461 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
462 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
463 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
465 rinv00 = gmx_mm_invsqrt_ps(rsq00);
466 rinv10 = gmx_mm_invsqrt_ps(rsq10);
467 rinv20 = gmx_mm_invsqrt_ps(rsq20);
469 /* Load parameters for j particles */
470 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
471 charge+jnrC+0,charge+jnrD+0);
472 vdwjidx0A = 2*vdwtype[jnrA+0];
473 vdwjidx0B = 2*vdwtype[jnrB+0];
474 vdwjidx0C = 2*vdwtype[jnrC+0];
475 vdwjidx0D = 2*vdwtype[jnrD+0];
477 fjx0 = _mm_setzero_ps();
478 fjy0 = _mm_setzero_ps();
479 fjz0 = _mm_setzero_ps();
481 /**************************
482 * CALCULATE INTERACTIONS *
483 **************************/
485 r00 = _mm_mul_ps(rsq00,rinv00);
486 r00 = _mm_andnot_ps(dummy_mask,r00);
488 /* Compute parameters for interactions between i and j atoms */
489 qq00 = _mm_mul_ps(iq0,jq0);
490 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
491 vdwparam+vdwioffset0+vdwjidx0B,
492 vdwparam+vdwioffset0+vdwjidx0C,
493 vdwparam+vdwioffset0+vdwjidx0D,
496 /* Calculate table index by multiplying r with table scale and truncate to integer */
497 rt = _mm_mul_ps(r00,vftabscale);
498 vfitab = _mm_cvttps_epi32(rt);
499 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
500 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
502 /* CUBIC SPLINE TABLE ELECTROSTATICS */
503 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
504 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
505 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
506 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
507 _MM_TRANSPOSE4_PS(Y,F,G,H);
508 Heps = _mm_mul_ps(vfeps,H);
509 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
510 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
511 velec = _mm_mul_ps(qq00,VV);
512 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
513 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
515 /* CUBIC SPLINE TABLE DISPERSION */
516 vfitab = _mm_add_epi32(vfitab,ifour);
517 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
518 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
519 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
520 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
521 _MM_TRANSPOSE4_PS(Y,F,G,H);
522 Heps = _mm_mul_ps(vfeps,H);
523 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
524 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
525 vvdw6 = _mm_mul_ps(c6_00,VV);
526 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
527 fvdw6 = _mm_mul_ps(c6_00,FF);
529 /* CUBIC SPLINE TABLE REPULSION */
530 vfitab = _mm_add_epi32(vfitab,ifour);
531 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
532 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
533 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
534 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
535 _MM_TRANSPOSE4_PS(Y,F,G,H);
536 Heps = _mm_mul_ps(vfeps,H);
537 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
538 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
539 vvdw12 = _mm_mul_ps(c12_00,VV);
540 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
541 fvdw12 = _mm_mul_ps(c12_00,FF);
542 vvdw = _mm_add_ps(vvdw12,vvdw6);
543 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
545 /* Update potential sum for this i atom from the interaction with this j atom. */
546 velec = _mm_andnot_ps(dummy_mask,velec);
547 velecsum = _mm_add_ps(velecsum,velec);
548 vvdw = _mm_andnot_ps(dummy_mask,vvdw);
549 vvdwsum = _mm_add_ps(vvdwsum,vvdw);
551 fscal = _mm_add_ps(felec,fvdw);
553 fscal = _mm_andnot_ps(dummy_mask,fscal);
555 /* Calculate temporary vectorial force */
556 tx = _mm_mul_ps(fscal,dx00);
557 ty = _mm_mul_ps(fscal,dy00);
558 tz = _mm_mul_ps(fscal,dz00);
560 /* Update vectorial force */
561 fix0 = _mm_add_ps(fix0,tx);
562 fiy0 = _mm_add_ps(fiy0,ty);
563 fiz0 = _mm_add_ps(fiz0,tz);
565 fjx0 = _mm_add_ps(fjx0,tx);
566 fjy0 = _mm_add_ps(fjy0,ty);
567 fjz0 = _mm_add_ps(fjz0,tz);
569 /**************************
570 * CALCULATE INTERACTIONS *
571 **************************/
573 r10 = _mm_mul_ps(rsq10,rinv10);
574 r10 = _mm_andnot_ps(dummy_mask,r10);
576 /* Compute parameters for interactions between i and j atoms */
577 qq10 = _mm_mul_ps(iq1,jq0);
579 /* Calculate table index by multiplying r with table scale and truncate to integer */
580 rt = _mm_mul_ps(r10,vftabscale);
581 vfitab = _mm_cvttps_epi32(rt);
582 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
583 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
585 /* CUBIC SPLINE TABLE ELECTROSTATICS */
586 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
587 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
588 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
589 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
590 _MM_TRANSPOSE4_PS(Y,F,G,H);
591 Heps = _mm_mul_ps(vfeps,H);
592 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
593 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
594 velec = _mm_mul_ps(qq10,VV);
595 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
596 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
598 /* Update potential sum for this i atom from the interaction with this j atom. */
599 velec = _mm_andnot_ps(dummy_mask,velec);
600 velecsum = _mm_add_ps(velecsum,velec);
604 fscal = _mm_andnot_ps(dummy_mask,fscal);
606 /* Calculate temporary vectorial force */
607 tx = _mm_mul_ps(fscal,dx10);
608 ty = _mm_mul_ps(fscal,dy10);
609 tz = _mm_mul_ps(fscal,dz10);
611 /* Update vectorial force */
612 fix1 = _mm_add_ps(fix1,tx);
613 fiy1 = _mm_add_ps(fiy1,ty);
614 fiz1 = _mm_add_ps(fiz1,tz);
616 fjx0 = _mm_add_ps(fjx0,tx);
617 fjy0 = _mm_add_ps(fjy0,ty);
618 fjz0 = _mm_add_ps(fjz0,tz);
620 /**************************
621 * CALCULATE INTERACTIONS *
622 **************************/
624 r20 = _mm_mul_ps(rsq20,rinv20);
625 r20 = _mm_andnot_ps(dummy_mask,r20);
627 /* Compute parameters for interactions between i and j atoms */
628 qq20 = _mm_mul_ps(iq2,jq0);
630 /* Calculate table index by multiplying r with table scale and truncate to integer */
631 rt = _mm_mul_ps(r20,vftabscale);
632 vfitab = _mm_cvttps_epi32(rt);
633 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
634 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
636 /* CUBIC SPLINE TABLE ELECTROSTATICS */
637 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
638 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
639 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
640 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
641 _MM_TRANSPOSE4_PS(Y,F,G,H);
642 Heps = _mm_mul_ps(vfeps,H);
643 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
644 VV = _mm_add_ps(Y,_mm_mul_ps(vfeps,Fp));
645 velec = _mm_mul_ps(qq20,VV);
646 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
647 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
649 /* Update potential sum for this i atom from the interaction with this j atom. */
650 velec = _mm_andnot_ps(dummy_mask,velec);
651 velecsum = _mm_add_ps(velecsum,velec);
655 fscal = _mm_andnot_ps(dummy_mask,fscal);
657 /* Calculate temporary vectorial force */
658 tx = _mm_mul_ps(fscal,dx20);
659 ty = _mm_mul_ps(fscal,dy20);
660 tz = _mm_mul_ps(fscal,dz20);
662 /* Update vectorial force */
663 fix2 = _mm_add_ps(fix2,tx);
664 fiy2 = _mm_add_ps(fiy2,ty);
665 fiz2 = _mm_add_ps(fiz2,tz);
667 fjx0 = _mm_add_ps(fjx0,tx);
668 fjy0 = _mm_add_ps(fjy0,ty);
669 fjz0 = _mm_add_ps(fjz0,tz);
671 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
672 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
673 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
674 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
676 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
678 /* Inner loop uses 162 flops */
681 /* End of innermost loop */
683 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
684 f+i_coord_offset,fshift+i_shift_offset);
687 /* Update potential energies */
688 gmx_mm_update_1pot_ps(velecsum,kernel_data->energygrp_elec+ggid);
689 gmx_mm_update_1pot_ps(vvdwsum,kernel_data->energygrp_vdw+ggid);
691 /* Increment number of inner iterations */
692 inneriter += j_index_end - j_index_start;
694 /* Outer loop uses 20 flops */
697 /* Increment number of outer iterations */
700 /* Update outer/inner flops */
702 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_VF,outeriter*20 + inneriter*162);
705 * Gromacs nonbonded kernel: nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_sse4_1_single
706 * Electrostatics interaction: CubicSplineTable
707 * VdW interaction: CubicSplineTable
708 * Geometry: Water3-Particle
709 * Calculate force/pot: Force
712 nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_F_sse4_1_single
713 (t_nblist * gmx_restrict nlist,
714 rvec * gmx_restrict xx,
715 rvec * gmx_restrict ff,
716 t_forcerec * gmx_restrict fr,
717 t_mdatoms * gmx_restrict mdatoms,
718 nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
719 t_nrnb * gmx_restrict nrnb)
721 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
722 * just 0 for non-waters.
723 * Suffixes A,B,C,D refer to j loop unrolling done with SSE, e.g. for the four different
724 * jnr indices corresponding to data put in the four positions in the SIMD register.
726 int i_shift_offset,i_coord_offset,outeriter,inneriter;
727 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
728 int jnrA,jnrB,jnrC,jnrD;
729 int jnrlistA,jnrlistB,jnrlistC,jnrlistD;
730 int j_coord_offsetA,j_coord_offsetB,j_coord_offsetC,j_coord_offsetD;
731 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
733 real *shiftvec,*fshift,*x,*f;
734 real *fjptrA,*fjptrB,*fjptrC,*fjptrD;
736 __m128 tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
738 __m128 ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
740 __m128 ix1,iy1,iz1,fix1,fiy1,fiz1,iq1,isai1;
742 __m128 ix2,iy2,iz2,fix2,fiy2,fiz2,iq2,isai2;
743 int vdwjidx0A,vdwjidx0B,vdwjidx0C,vdwjidx0D;
744 __m128 jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
745 __m128 dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
746 __m128 dx10,dy10,dz10,rsq10,rinv10,rinvsq10,r10,qq10,c6_10,c12_10;
747 __m128 dx20,dy20,dz20,rsq20,rinv20,rinvsq20,r20,qq20,c6_20,c12_20;
748 __m128 velec,felec,velecsum,facel,crf,krf,krf2;
751 __m128 rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
754 __m128 one_sixth = _mm_set1_ps(1.0/6.0);
755 __m128 one_twelfth = _mm_set1_ps(1.0/12.0);
757 __m128i ifour = _mm_set1_epi32(4);
758 __m128 rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
760 __m128 dummy_mask,cutoff_mask;
761 __m128 signbit = _mm_castsi128_ps( _mm_set1_epi32(0x80000000) );
762 __m128 one = _mm_set1_ps(1.0);
763 __m128 two = _mm_set1_ps(2.0);
769 jindex = nlist->jindex;
771 shiftidx = nlist->shift;
773 shiftvec = fr->shift_vec[0];
774 fshift = fr->fshift[0];
775 facel = _mm_set1_ps(fr->epsfac);
776 charge = mdatoms->chargeA;
777 nvdwtype = fr->ntype;
779 vdwtype = mdatoms->typeA;
781 vftab = kernel_data->table_elec_vdw->data;
782 vftabscale = _mm_set1_ps(kernel_data->table_elec_vdw->scale);
784 /* Setup water-specific parameters */
785 inr = nlist->iinr[0];
786 iq0 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+0]));
787 iq1 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+1]));
788 iq2 = _mm_mul_ps(facel,_mm_set1_ps(charge[inr+2]));
789 vdwioffset0 = 2*nvdwtype*vdwtype[inr+0];
791 /* Avoid stupid compiler warnings */
792 jnrA = jnrB = jnrC = jnrD = 0;
801 for(iidx=0;iidx<4*DIM;iidx++)
806 /* Start outer loop over neighborlists */
807 for(iidx=0; iidx<nri; iidx++)
809 /* Load shift vector for this list */
810 i_shift_offset = DIM*shiftidx[iidx];
812 /* Load limits for loop over neighbors */
813 j_index_start = jindex[iidx];
814 j_index_end = jindex[iidx+1];
816 /* Get outer coordinate index */
818 i_coord_offset = DIM*inr;
820 /* Load i particle coords and add shift vector */
821 gmx_mm_load_shift_and_3rvec_broadcast_ps(shiftvec+i_shift_offset,x+i_coord_offset,
822 &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
824 fix0 = _mm_setzero_ps();
825 fiy0 = _mm_setzero_ps();
826 fiz0 = _mm_setzero_ps();
827 fix1 = _mm_setzero_ps();
828 fiy1 = _mm_setzero_ps();
829 fiz1 = _mm_setzero_ps();
830 fix2 = _mm_setzero_ps();
831 fiy2 = _mm_setzero_ps();
832 fiz2 = _mm_setzero_ps();
834 /* Start inner kernel loop */
835 for(jidx=j_index_start; jidx<j_index_end && jjnr[jidx+3]>=0; jidx+=4)
838 /* Get j neighbor index, and coordinate index */
843 j_coord_offsetA = DIM*jnrA;
844 j_coord_offsetB = DIM*jnrB;
845 j_coord_offsetC = DIM*jnrC;
846 j_coord_offsetD = DIM*jnrD;
848 /* load j atom coordinates */
849 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
850 x+j_coord_offsetC,x+j_coord_offsetD,
853 /* Calculate displacement vector */
854 dx00 = _mm_sub_ps(ix0,jx0);
855 dy00 = _mm_sub_ps(iy0,jy0);
856 dz00 = _mm_sub_ps(iz0,jz0);
857 dx10 = _mm_sub_ps(ix1,jx0);
858 dy10 = _mm_sub_ps(iy1,jy0);
859 dz10 = _mm_sub_ps(iz1,jz0);
860 dx20 = _mm_sub_ps(ix2,jx0);
861 dy20 = _mm_sub_ps(iy2,jy0);
862 dz20 = _mm_sub_ps(iz2,jz0);
864 /* Calculate squared distance and things based on it */
865 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
866 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
867 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
869 rinv00 = gmx_mm_invsqrt_ps(rsq00);
870 rinv10 = gmx_mm_invsqrt_ps(rsq10);
871 rinv20 = gmx_mm_invsqrt_ps(rsq20);
873 /* Load parameters for j particles */
874 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
875 charge+jnrC+0,charge+jnrD+0);
876 vdwjidx0A = 2*vdwtype[jnrA+0];
877 vdwjidx0B = 2*vdwtype[jnrB+0];
878 vdwjidx0C = 2*vdwtype[jnrC+0];
879 vdwjidx0D = 2*vdwtype[jnrD+0];
881 fjx0 = _mm_setzero_ps();
882 fjy0 = _mm_setzero_ps();
883 fjz0 = _mm_setzero_ps();
885 /**************************
886 * CALCULATE INTERACTIONS *
887 **************************/
889 r00 = _mm_mul_ps(rsq00,rinv00);
891 /* Compute parameters for interactions between i and j atoms */
892 qq00 = _mm_mul_ps(iq0,jq0);
893 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
894 vdwparam+vdwioffset0+vdwjidx0B,
895 vdwparam+vdwioffset0+vdwjidx0C,
896 vdwparam+vdwioffset0+vdwjidx0D,
899 /* Calculate table index by multiplying r with table scale and truncate to integer */
900 rt = _mm_mul_ps(r00,vftabscale);
901 vfitab = _mm_cvttps_epi32(rt);
902 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
903 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
905 /* CUBIC SPLINE TABLE ELECTROSTATICS */
906 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
907 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
908 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
909 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
910 _MM_TRANSPOSE4_PS(Y,F,G,H);
911 Heps = _mm_mul_ps(vfeps,H);
912 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
913 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
914 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
916 /* CUBIC SPLINE TABLE DISPERSION */
917 vfitab = _mm_add_epi32(vfitab,ifour);
918 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
919 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
920 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
921 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
922 _MM_TRANSPOSE4_PS(Y,F,G,H);
923 Heps = _mm_mul_ps(vfeps,H);
924 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
925 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
926 fvdw6 = _mm_mul_ps(c6_00,FF);
928 /* CUBIC SPLINE TABLE REPULSION */
929 vfitab = _mm_add_epi32(vfitab,ifour);
930 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
931 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
932 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
933 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
934 _MM_TRANSPOSE4_PS(Y,F,G,H);
935 Heps = _mm_mul_ps(vfeps,H);
936 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
937 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
938 fvdw12 = _mm_mul_ps(c12_00,FF);
939 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
941 fscal = _mm_add_ps(felec,fvdw);
943 /* Calculate temporary vectorial force */
944 tx = _mm_mul_ps(fscal,dx00);
945 ty = _mm_mul_ps(fscal,dy00);
946 tz = _mm_mul_ps(fscal,dz00);
948 /* Update vectorial force */
949 fix0 = _mm_add_ps(fix0,tx);
950 fiy0 = _mm_add_ps(fiy0,ty);
951 fiz0 = _mm_add_ps(fiz0,tz);
953 fjx0 = _mm_add_ps(fjx0,tx);
954 fjy0 = _mm_add_ps(fjy0,ty);
955 fjz0 = _mm_add_ps(fjz0,tz);
957 /**************************
958 * CALCULATE INTERACTIONS *
959 **************************/
961 r10 = _mm_mul_ps(rsq10,rinv10);
963 /* Compute parameters for interactions between i and j atoms */
964 qq10 = _mm_mul_ps(iq1,jq0);
966 /* Calculate table index by multiplying r with table scale and truncate to integer */
967 rt = _mm_mul_ps(r10,vftabscale);
968 vfitab = _mm_cvttps_epi32(rt);
969 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
970 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
972 /* CUBIC SPLINE TABLE ELECTROSTATICS */
973 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
974 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
975 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
976 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
977 _MM_TRANSPOSE4_PS(Y,F,G,H);
978 Heps = _mm_mul_ps(vfeps,H);
979 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
980 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
981 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
985 /* Calculate temporary vectorial force */
986 tx = _mm_mul_ps(fscal,dx10);
987 ty = _mm_mul_ps(fscal,dy10);
988 tz = _mm_mul_ps(fscal,dz10);
990 /* Update vectorial force */
991 fix1 = _mm_add_ps(fix1,tx);
992 fiy1 = _mm_add_ps(fiy1,ty);
993 fiz1 = _mm_add_ps(fiz1,tz);
995 fjx0 = _mm_add_ps(fjx0,tx);
996 fjy0 = _mm_add_ps(fjy0,ty);
997 fjz0 = _mm_add_ps(fjz0,tz);
999 /**************************
1000 * CALCULATE INTERACTIONS *
1001 **************************/
1003 r20 = _mm_mul_ps(rsq20,rinv20);
1005 /* Compute parameters for interactions between i and j atoms */
1006 qq20 = _mm_mul_ps(iq2,jq0);
1008 /* Calculate table index by multiplying r with table scale and truncate to integer */
1009 rt = _mm_mul_ps(r20,vftabscale);
1010 vfitab = _mm_cvttps_epi32(rt);
1011 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1012 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1014 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1015 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1016 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1017 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1018 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1019 _MM_TRANSPOSE4_PS(Y,F,G,H);
1020 Heps = _mm_mul_ps(vfeps,H);
1021 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1022 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1023 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1027 /* Calculate temporary vectorial force */
1028 tx = _mm_mul_ps(fscal,dx20);
1029 ty = _mm_mul_ps(fscal,dy20);
1030 tz = _mm_mul_ps(fscal,dz20);
1032 /* Update vectorial force */
1033 fix2 = _mm_add_ps(fix2,tx);
1034 fiy2 = _mm_add_ps(fiy2,ty);
1035 fiz2 = _mm_add_ps(fiz2,tz);
1037 fjx0 = _mm_add_ps(fjx0,tx);
1038 fjy0 = _mm_add_ps(fjy0,ty);
1039 fjz0 = _mm_add_ps(fjz0,tz);
1041 fjptrA = f+j_coord_offsetA;
1042 fjptrB = f+j_coord_offsetB;
1043 fjptrC = f+j_coord_offsetC;
1044 fjptrD = f+j_coord_offsetD;
1046 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1048 /* Inner loop uses 139 flops */
1051 if(jidx<j_index_end)
1054 /* Get j neighbor index, and coordinate index */
1055 jnrlistA = jjnr[jidx];
1056 jnrlistB = jjnr[jidx+1];
1057 jnrlistC = jjnr[jidx+2];
1058 jnrlistD = jjnr[jidx+3];
1059 /* Sign of each element will be negative for non-real atoms.
1060 * This mask will be 0xFFFFFFFF for dummy entries and 0x0 for real ones,
1061 * so use it as val = _mm_andnot_ps(mask,val) to clear dummy entries.
1063 dummy_mask = gmx_mm_castsi128_ps(_mm_cmplt_epi32(_mm_loadu_si128((const __m128i *)(jjnr+jidx)),_mm_setzero_si128()));
1064 jnrA = (jnrlistA>=0) ? jnrlistA : 0;
1065 jnrB = (jnrlistB>=0) ? jnrlistB : 0;
1066 jnrC = (jnrlistC>=0) ? jnrlistC : 0;
1067 jnrD = (jnrlistD>=0) ? jnrlistD : 0;
1068 j_coord_offsetA = DIM*jnrA;
1069 j_coord_offsetB = DIM*jnrB;
1070 j_coord_offsetC = DIM*jnrC;
1071 j_coord_offsetD = DIM*jnrD;
1073 /* load j atom coordinates */
1074 gmx_mm_load_1rvec_4ptr_swizzle_ps(x+j_coord_offsetA,x+j_coord_offsetB,
1075 x+j_coord_offsetC,x+j_coord_offsetD,
1078 /* Calculate displacement vector */
1079 dx00 = _mm_sub_ps(ix0,jx0);
1080 dy00 = _mm_sub_ps(iy0,jy0);
1081 dz00 = _mm_sub_ps(iz0,jz0);
1082 dx10 = _mm_sub_ps(ix1,jx0);
1083 dy10 = _mm_sub_ps(iy1,jy0);
1084 dz10 = _mm_sub_ps(iz1,jz0);
1085 dx20 = _mm_sub_ps(ix2,jx0);
1086 dy20 = _mm_sub_ps(iy2,jy0);
1087 dz20 = _mm_sub_ps(iz2,jz0);
1089 /* Calculate squared distance and things based on it */
1090 rsq00 = gmx_mm_calc_rsq_ps(dx00,dy00,dz00);
1091 rsq10 = gmx_mm_calc_rsq_ps(dx10,dy10,dz10);
1092 rsq20 = gmx_mm_calc_rsq_ps(dx20,dy20,dz20);
1094 rinv00 = gmx_mm_invsqrt_ps(rsq00);
1095 rinv10 = gmx_mm_invsqrt_ps(rsq10);
1096 rinv20 = gmx_mm_invsqrt_ps(rsq20);
1098 /* Load parameters for j particles */
1099 jq0 = gmx_mm_load_4real_swizzle_ps(charge+jnrA+0,charge+jnrB+0,
1100 charge+jnrC+0,charge+jnrD+0);
1101 vdwjidx0A = 2*vdwtype[jnrA+0];
1102 vdwjidx0B = 2*vdwtype[jnrB+0];
1103 vdwjidx0C = 2*vdwtype[jnrC+0];
1104 vdwjidx0D = 2*vdwtype[jnrD+0];
1106 fjx0 = _mm_setzero_ps();
1107 fjy0 = _mm_setzero_ps();
1108 fjz0 = _mm_setzero_ps();
1110 /**************************
1111 * CALCULATE INTERACTIONS *
1112 **************************/
1114 r00 = _mm_mul_ps(rsq00,rinv00);
1115 r00 = _mm_andnot_ps(dummy_mask,r00);
1117 /* Compute parameters for interactions between i and j atoms */
1118 qq00 = _mm_mul_ps(iq0,jq0);
1119 gmx_mm_load_4pair_swizzle_ps(vdwparam+vdwioffset0+vdwjidx0A,
1120 vdwparam+vdwioffset0+vdwjidx0B,
1121 vdwparam+vdwioffset0+vdwjidx0C,
1122 vdwparam+vdwioffset0+vdwjidx0D,
1125 /* Calculate table index by multiplying r with table scale and truncate to integer */
1126 rt = _mm_mul_ps(r00,vftabscale);
1127 vfitab = _mm_cvttps_epi32(rt);
1128 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1129 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1131 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1132 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1133 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1134 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1135 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1136 _MM_TRANSPOSE4_PS(Y,F,G,H);
1137 Heps = _mm_mul_ps(vfeps,H);
1138 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1139 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1140 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq00,FF),_mm_mul_ps(vftabscale,rinv00)));
1142 /* CUBIC SPLINE TABLE DISPERSION */
1143 vfitab = _mm_add_epi32(vfitab,ifour);
1144 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1145 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1146 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1147 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1148 _MM_TRANSPOSE4_PS(Y,F,G,H);
1149 Heps = _mm_mul_ps(vfeps,H);
1150 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1151 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1152 fvdw6 = _mm_mul_ps(c6_00,FF);
1154 /* CUBIC SPLINE TABLE REPULSION */
1155 vfitab = _mm_add_epi32(vfitab,ifour);
1156 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1157 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1158 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1159 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1160 _MM_TRANSPOSE4_PS(Y,F,G,H);
1161 Heps = _mm_mul_ps(vfeps,H);
1162 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1163 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1164 fvdw12 = _mm_mul_ps(c12_00,FF);
1165 fvdw = _mm_xor_ps(signbit,_mm_mul_ps(_mm_add_ps(fvdw6,fvdw12),_mm_mul_ps(vftabscale,rinv00)));
1167 fscal = _mm_add_ps(felec,fvdw);
1169 fscal = _mm_andnot_ps(dummy_mask,fscal);
1171 /* Calculate temporary vectorial force */
1172 tx = _mm_mul_ps(fscal,dx00);
1173 ty = _mm_mul_ps(fscal,dy00);
1174 tz = _mm_mul_ps(fscal,dz00);
1176 /* Update vectorial force */
1177 fix0 = _mm_add_ps(fix0,tx);
1178 fiy0 = _mm_add_ps(fiy0,ty);
1179 fiz0 = _mm_add_ps(fiz0,tz);
1181 fjx0 = _mm_add_ps(fjx0,tx);
1182 fjy0 = _mm_add_ps(fjy0,ty);
1183 fjz0 = _mm_add_ps(fjz0,tz);
1185 /**************************
1186 * CALCULATE INTERACTIONS *
1187 **************************/
1189 r10 = _mm_mul_ps(rsq10,rinv10);
1190 r10 = _mm_andnot_ps(dummy_mask,r10);
1192 /* Compute parameters for interactions between i and j atoms */
1193 qq10 = _mm_mul_ps(iq1,jq0);
1195 /* Calculate table index by multiplying r with table scale and truncate to integer */
1196 rt = _mm_mul_ps(r10,vftabscale);
1197 vfitab = _mm_cvttps_epi32(rt);
1198 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1199 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1201 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1202 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1203 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1204 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1205 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1206 _MM_TRANSPOSE4_PS(Y,F,G,H);
1207 Heps = _mm_mul_ps(vfeps,H);
1208 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1209 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1210 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq10,FF),_mm_mul_ps(vftabscale,rinv10)));
1214 fscal = _mm_andnot_ps(dummy_mask,fscal);
1216 /* Calculate temporary vectorial force */
1217 tx = _mm_mul_ps(fscal,dx10);
1218 ty = _mm_mul_ps(fscal,dy10);
1219 tz = _mm_mul_ps(fscal,dz10);
1221 /* Update vectorial force */
1222 fix1 = _mm_add_ps(fix1,tx);
1223 fiy1 = _mm_add_ps(fiy1,ty);
1224 fiz1 = _mm_add_ps(fiz1,tz);
1226 fjx0 = _mm_add_ps(fjx0,tx);
1227 fjy0 = _mm_add_ps(fjy0,ty);
1228 fjz0 = _mm_add_ps(fjz0,tz);
1230 /**************************
1231 * CALCULATE INTERACTIONS *
1232 **************************/
1234 r20 = _mm_mul_ps(rsq20,rinv20);
1235 r20 = _mm_andnot_ps(dummy_mask,r20);
1237 /* Compute parameters for interactions between i and j atoms */
1238 qq20 = _mm_mul_ps(iq2,jq0);
1240 /* Calculate table index by multiplying r with table scale and truncate to integer */
1241 rt = _mm_mul_ps(r20,vftabscale);
1242 vfitab = _mm_cvttps_epi32(rt);
1243 vfeps = _mm_sub_ps(rt,_mm_round_ps(rt, _MM_FROUND_FLOOR));
1244 vfitab = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
1246 /* CUBIC SPLINE TABLE ELECTROSTATICS */
1247 Y = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,0) );
1248 F = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,1) );
1249 G = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,2) );
1250 H = _mm_load_ps( vftab + gmx_mm_extract_epi32(vfitab,3) );
1251 _MM_TRANSPOSE4_PS(Y,F,G,H);
1252 Heps = _mm_mul_ps(vfeps,H);
1253 Fp = _mm_add_ps(F,_mm_mul_ps(vfeps,_mm_add_ps(G,Heps)));
1254 FF = _mm_add_ps(Fp,_mm_mul_ps(vfeps,_mm_add_ps(G,_mm_add_ps(Heps,Heps))));
1255 felec = _mm_xor_ps(signbit,_mm_mul_ps(_mm_mul_ps(qq20,FF),_mm_mul_ps(vftabscale,rinv20)));
1259 fscal = _mm_andnot_ps(dummy_mask,fscal);
1261 /* Calculate temporary vectorial force */
1262 tx = _mm_mul_ps(fscal,dx20);
1263 ty = _mm_mul_ps(fscal,dy20);
1264 tz = _mm_mul_ps(fscal,dz20);
1266 /* Update vectorial force */
1267 fix2 = _mm_add_ps(fix2,tx);
1268 fiy2 = _mm_add_ps(fiy2,ty);
1269 fiz2 = _mm_add_ps(fiz2,tz);
1271 fjx0 = _mm_add_ps(fjx0,tx);
1272 fjy0 = _mm_add_ps(fjy0,ty);
1273 fjz0 = _mm_add_ps(fjz0,tz);
1275 fjptrA = (jnrlistA>=0) ? f+j_coord_offsetA : scratch;
1276 fjptrB = (jnrlistB>=0) ? f+j_coord_offsetB : scratch;
1277 fjptrC = (jnrlistC>=0) ? f+j_coord_offsetC : scratch;
1278 fjptrD = (jnrlistD>=0) ? f+j_coord_offsetD : scratch;
1280 gmx_mm_decrement_1rvec_4ptr_swizzle_ps(fjptrA,fjptrB,fjptrC,fjptrD,fjx0,fjy0,fjz0);
1282 /* Inner loop uses 142 flops */
1285 /* End of innermost loop */
1287 gmx_mm_update_iforce_3atom_swizzle_ps(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1288 f+i_coord_offset,fshift+i_shift_offset);
1290 /* Increment number of inner iterations */
1291 inneriter += j_index_end - j_index_start;
1293 /* Outer loop uses 18 flops */
1296 /* Increment number of outer iterations */
1299 /* Update outer/inner flops */
1301 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW_W3_F,outeriter*18 + inneriter*142);