2115c8ef5e0b4e7c04617c3c5a102a2579966df5
[alexxy/gromacs.git] / src / gromacs / gmxlib / nonbonded / nb_kernel_sse4_1_double / nb_kernel_template_sse4_1_double.pre
1 /* #if 0 */
2 /*
3  * This file is part of the GROMACS molecular simulation package.
4  *
5  * Copyright (c) 2012,2013,2014,2015,2017, by the GROMACS development team, led by
6  * Mark Abraham, David van der Spoel, Berk Hess, and Erik Lindahl,
7  * and including many others, as listed in the AUTHORS file in the
8  * top-level source directory and at http://www.gromacs.org.
9  *
10  * GROMACS is free software; you can redistribute it and/or
11  * modify it under the terms of the GNU Lesser General Public License
12  * as published by the Free Software Foundation; either version 2.1
13  * of the License, or (at your option) any later version.
14  *
15  * GROMACS is distributed in the hope that it will be useful,
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18  * Lesser General Public License for more details.
19  *
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35  */
36 #error This file must be processed with the Gromacs pre-preprocessor
37 /* #endif */
38 /* #if INCLUDE_HEADER */
39 #include "gmxpre.h"
40
41 #include "config.h"
42
43 #include <math.h>
44
45 #include "../nb_kernel.h"
46 #include "gromacs/gmxlib/nrnb.h"
47
48 #include "kernelutil_x86_sse4_1_double.h"
49 /* #endif */
50
51 /* ## List of variables set by the generating script:                                    */
52 /* ##                                                                                    */
53 /* ## Setttings that apply to the entire kernel:                                         */
54 /* ## KERNEL_ELEC:           String, choice for electrostatic interactions               */
55 /* ## KERNEL_VDW:            String, choice for van der Waals interactions               */
56 /* ## KERNEL_NAME:           String, name of this kernel                                 */
57 /* ## KERNEL_VF:             String telling if we calculate potential, force, or both    */
58 /* ## GEOMETRY_I/GEOMETRY_J: String, name of each geometry, e.g. 'Water3' or '1Particle' */
59 /* ##                                                                                    */
60 /* ## Setttings that apply to particles in the outer (I) or inner (J) loops:             */
61 /* ## PARTICLES_I[]/         Arrays with lists of i/j particles to use in kernel. It is  */
62 /* ## PARTICLES_J[]:         just [0] for particle geometry, but can be longer for water */
63 /* ## PARTICLES_ELEC_I[]/    Arrays with lists of i/j particle that have electrostatics  */
64 /* ## PARTICLES_ELEC_J[]:    interactions that should be calculated in this kernel.      */
65 /* ## PARTICLES_VDW_I[]/     Arrays with the list of i/j particle that have VdW          */
66 /* ## PARTICLES_VDW_J[]:     interactions that should be calculated in this kernel.      */
67 /* ##                                                                                    */
68 /* ## Setttings for pairs of interactions (e.g. 2nd i particle against 1st j particle)   */
69 /* ## PAIRS_IJ[]:            Array with (i,j) tuples of pairs for which interactions     */
70 /* ##                        should be calculated in this kernel. Zero-charge particles  */
71 /* ##                        do not have interactions with particles without vdw, and    */
72 /* ##                        Vdw-only interactions are not evaluated in a no-vdw-kernel. */
73 /* ## INTERACTION_FLAGS[][]: 2D matrix, dimension e.g. 3*3 for water-water interactions. */
74 /* ##                        For each i-j pair, the element [I][J] is a list of strings  */
75 /* ##                        defining properties/flags of this interaction. Examples     */
76 /* ##                        include 'electrostatics'/'vdw' if that type of interaction  */
77 /* ##                        should be evaluated, 'rsq'/'rinv'/'rinvsq' if those values  */
78 /* ##                        are needed, and 'exactcutoff' or 'shift','switch' to        */
79 /* ##                        decide if the force/potential should be modified. This way  */
80 /* ##                        we only calculate values absolutely needed for each case.   */
81
82 /* ## Calculate the size and offset for (merged/interleaved) table data */
83
84 /*
85  * Gromacs nonbonded kernel:   {KERNEL_NAME}
86  * Electrostatics interaction: {KERNEL_ELEC}
87  * VdW interaction:            {KERNEL_VDW}
88  * Geometry:                   {GEOMETRY_I}-{GEOMETRY_J}
89  * Calculate force/pot:        {KERNEL_VF}
90  */
91 void
92 {KERNEL_NAME}
93                     (t_nblist                    * gmx_restrict       nlist,
94                      rvec                        * gmx_restrict          xx,
95                      rvec                        * gmx_restrict          ff,
96                      struct t_forcerec           * gmx_restrict          fr,
97                      t_mdatoms                   * gmx_restrict     mdatoms,
98                      nb_kernel_data_t gmx_unused * gmx_restrict kernel_data,
99                      t_nrnb                      * gmx_restrict        nrnb)
100 {
101     /* ## Not all variables are used for all kernels, but any optimizing compiler fixes that, */
102     /* ## so there is no point in going to extremes to exclude variables that are not needed. */
103     /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
104      * just 0 for non-waters.
105      * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
106      * jnr indices corresponding to data put in the four positions in the SIMD register.
107      */
108     int              i_shift_offset,i_coord_offset,outeriter,inneriter;
109     int              j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
110     int              jnrA,jnrB;
111     int              j_coord_offsetA,j_coord_offsetB;
112     int              *iinr,*jindex,*jjnr,*shiftidx,*gid;
113     real             rcutoff_scalar;
114     real             *shiftvec,*fshift,*x,*f;
115     __m128d          tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
116     /* #for I in PARTICLES_I */
117     int              vdwioffset{I};
118     __m128d          ix{I},iy{I},iz{I},fix{I},fiy{I},fiz{I},iq{I},isai{I};
119     /* #endfor */
120     /* #for J in PARTICLES_J */
121     int              vdwjidx{J}A,vdwjidx{J}B;
122     __m128d          jx{J},jy{J},jz{J},fjx{J},fjy{J},fjz{J},jq{J},isaj{J};
123     /* #endfor */
124     /* #for I,J in PAIRS_IJ */
125     __m128d          dx{I}{J},dy{I}{J},dz{I}{J},rsq{I}{J},rinv{I}{J},rinvsq{I}{J},r{I}{J},qq{I}{J},c6_{I}{J},c12_{I}{J};
126     /* #endfor */
127     /* #if KERNEL_ELEC != 'None' */
128     __m128d          velec,felec,velecsum,facel,crf,krf,krf2;
129     real             *charge;
130     /* #endif */
131     /* #if 'GeneralizedBorn' in KERNEL_ELEC */
132     __m128i          gbitab;
133     __m128d          vgb,fgb,vgbsum,dvdasum,gbscale,gbtabscale,isaprod,gbqqfactor,gbinvepsdiff,dvdaj,gbeps,dvdatmp;
134     __m128d          minushalf = _mm_set1_pd(-0.5);
135     real             *invsqrta,*dvda,*gbtab;
136     /* #endif */
137     /* #if KERNEL_VDW != 'None' */
138     int              nvdwtype;
139     __m128d          rinvsix,rvdw,vvdw,vvdw6,vvdw12,fvdw,fvdw6,fvdw12,vvdwsum,sh_vdw_invrcut6;
140     int              *vdwtype;
141     real             *vdwparam;
142     __m128d          one_sixth   = _mm_set1_pd(1.0/6.0);
143     __m128d          one_twelfth = _mm_set1_pd(1.0/12.0);
144     /* #endif */
145     /* #if 'Table' in KERNEL_ELEC or 'GeneralizedBorn' in KERNEL_ELEC or 'Table' in KERNEL_VDW */
146     __m128i          vfitab;
147     __m128i          ifour       = _mm_set1_epi32(4);
148     __m128d          rt,vfeps,vftabscale,Y,F,G,H,Heps,Fp,VV,FF;
149     real             *vftab;
150     /* #endif */
151     /* #if 'LJEwald' in KERNEL_VDW */
152     /* #for I,J in PAIRS_IJ */
153     __m128d           c6grid_{I}{J};
154     /* #endfor */
155     __m128d           ewclj,ewclj2,ewclj6,ewcljrsq,poly,exponent,f6A,f6B,sh_lj_ewald;
156     real             *vdwgridparam;
157     __m128d           one_half = _mm_set1_pd(0.5);
158     __m128d           minus_one = _mm_set1_pd(-1.0);
159     /* #endif */
160     /* #if 'Ewald' in KERNEL_ELEC */
161     __m128i          ewitab;
162     __m128d          ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
163     real             *ewtab;
164     /* #endif */
165     /* #if 'PotentialSwitch' in [KERNEL_MOD_ELEC,KERNEL_MOD_VDW] */
166     __m128d          rswitch,swV3,swV4,swV5,swF2,swF3,swF4,d,d2,sw,dsw;
167     real             rswitch_scalar,d_scalar;
168     /* #endif */
169     __m128d          dummy_mask,cutoff_mask;
170     __m128d          signbit   = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
171     __m128d          one     = _mm_set1_pd(1.0);
172     __m128d          two     = _mm_set1_pd(2.0);
173     x                = xx[0];
174     f                = ff[0];
175
176     nri              = nlist->nri;
177     iinr             = nlist->iinr;
178     jindex           = nlist->jindex;
179     jjnr             = nlist->jjnr;
180     shiftidx         = nlist->shift;
181     gid              = nlist->gid;
182     shiftvec         = fr->shift_vec[0];
183     fshift           = fr->fshift[0];
184     /* #if KERNEL_ELEC != 'None' */
185     facel            = _mm_set1_pd(fr->ic->epsfac);
186     charge           = mdatoms->chargeA;
187     /*     #if 'ReactionField' in KERNEL_ELEC */
188     krf              = _mm_set1_pd(fr->ic->k_rf);
189     krf2             = _mm_set1_pd(fr->ic->k_rf*2.0);
190     crf              = _mm_set1_pd(fr->ic->c_rf);
191     /*     #endif */
192     /* #endif */
193     /* #if KERNEL_VDW != 'None' */
194     nvdwtype         = fr->ntype;
195     vdwparam         = fr->nbfp;
196     vdwtype          = mdatoms->typeA;
197     /* #endif */
198     /* #if 'LJEwald' in KERNEL_VDW */
199     vdwgridparam     = fr->ljpme_c6grid;
200     sh_lj_ewald      = _mm_set1_pd(fr->ic->sh_lj_ewald);
201     ewclj            = _mm_set1_pd(fr->ic->ewaldcoeff_lj);
202     ewclj2           = _mm_mul_pd(minus_one,_mm_mul_pd(ewclj,ewclj));
203     /* #endif */
204
205     /* #if 'Table' in KERNEL_ELEC and 'Table' in KERNEL_VDW */
206     vftab            = kernel_data->table_elec_vdw->data;
207     vftabscale       = _mm_set1_pd(kernel_data->table_elec_vdw->scale);
208     /* #elif 'Table' in KERNEL_ELEC */
209     vftab            = kernel_data->table_elec->data;
210     vftabscale       = _mm_set1_pd(kernel_data->table_elec->scale);
211     /* #elif 'Table' in KERNEL_VDW */
212     vftab            = kernel_data->table_vdw->data;
213     vftabscale       = _mm_set1_pd(kernel_data->table_vdw->scale);
214     /* #endif */
215
216     /* #if 'Ewald' in KERNEL_ELEC */
217     sh_ewald         = _mm_set1_pd(fr->ic->sh_ewald);
218     /*     #if KERNEL_VF=='Force' and KERNEL_MOD_ELEC!='PotentialSwitch' */
219     ewtab            = fr->ic->tabq_coul_F;
220     ewtabscale       = _mm_set1_pd(fr->ic->tabq_scale);
221     ewtabhalfspace   = _mm_set1_pd(0.5/fr->ic->tabq_scale);
222     /*     #else */
223     ewtab            = fr->ic->tabq_coul_FDV0;
224     ewtabscale       = _mm_set1_pd(fr->ic->tabq_scale);
225     ewtabhalfspace   = _mm_set1_pd(0.5/fr->ic->tabq_scale);
226      /*     #endif */
227     /* #endif */
228
229     /* #if KERNEL_ELEC=='GeneralizedBorn' */
230     invsqrta         = fr->invsqrta;
231     dvda             = fr->dvda;
232     gbtabscale       = _mm_set1_pd(fr->gbtab->scale);
233     gbtab            = fr->gbtab->data;
234     gbinvepsdiff     = _mm_set1_pd((1.0/fr->ic->epsilon_r) - (1.0/fr->gb_epsilon_solvent));
235     /* #endif */
236
237     /* #if 'Water' in GEOMETRY_I */
238     /* Setup water-specific parameters */
239     inr              = nlist->iinr[0];
240     /*     #for I in PARTICLES_ELEC_I */
241     iq{I}              = _mm_mul_pd(facel,_mm_set1_pd(charge[inr+{I}]));
242     /*     #endfor */
243     /*     #for I in PARTICLES_VDW_I */
244     vdwioffset{I}      = 2*nvdwtype*vdwtype[inr+{I}];
245     /*     #endfor */
246     /* #endif */
247
248     /* #if 'Water' in GEOMETRY_J */
249     /*     #for J in PARTICLES_ELEC_J */
250     jq{J}              = _mm_set1_pd(charge[inr+{J}]);
251     /*     #endfor */
252     /*     #for J in PARTICLES_VDW_J */
253     vdwjidx{J}A        = 2*vdwtype[inr+{J}];
254     /*     #endfor */
255     /*     #for I,J in PAIRS_IJ */
256     /*         #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
257     qq{I}{J}             = _mm_mul_pd(iq{I},jq{J});
258     /*         #endif */
259     /*         #if 'vdw' in INTERACTION_FLAGS[I][J] */
260     /*             #if 'LJEwald' in KERNEL_VDW */
261     c6_{I}{J}            = _mm_set1_pd(vdwparam[vdwioffset{I}+vdwjidx{J}A]);
262     c12_{I}{J}           = _mm_set1_pd(vdwparam[vdwioffset{I}+vdwjidx{J}A+1]);
263     c6grid_{I}{J}        = _mm_set1_pd(vdwgridparam[vdwioffset{I}+vdwjidx{J}A]);
264     /*             #else */
265     c6_{I}{J}            = _mm_set1_pd(vdwparam[vdwioffset{I}+vdwjidx{J}A]);
266     c12_{I}{J}           = _mm_set1_pd(vdwparam[vdwioffset{I}+vdwjidx{J}A+1]);
267     /*             #endif */
268     /*         #endif */
269     /*     #endfor */
270     /* #endif */
271
272     /* #if KERNEL_MOD_ELEC!='None' or KERNEL_MOD_VDW!='None' */
273     /*     #if KERNEL_ELEC!='None' */
274     /* When we use explicit cutoffs the value must be identical for elec and VdW, so use elec as an arbitrary choice */
275     rcutoff_scalar   = fr->ic->rcoulomb;
276     /*     #else */
277     rcutoff_scalar   = fr->ic->rvdw;
278     /*     #endif */
279     rcutoff          = _mm_set1_pd(rcutoff_scalar);
280     rcutoff2         = _mm_mul_pd(rcutoff,rcutoff);
281     /* #endif */
282
283     /* #if KERNEL_MOD_VDW=='PotentialShift' */
284     sh_vdw_invrcut6  = _mm_set1_pd(fr->ic->sh_invrc6);
285     rvdw             = _mm_set1_pd(fr->ic->rvdw);
286     /* #endif */
287
288     /* #if 'PotentialSwitch' in [KERNEL_MOD_ELEC,KERNEL_MOD_VDW] */
289     /*     #if KERNEL_MOD_ELEC=='PotentialSwitch'  */
290     rswitch_scalar   = fr->ic->rcoulomb_switch;
291     rswitch          = _mm_set1_pd(rswitch_scalar);
292     /*     #else */
293     rswitch_scalar   = fr->ic->rvdw_switch;
294     rswitch          = _mm_set1_pd(rswitch_scalar);
295     /*     #endif */
296     /* Setup switch parameters */
297     d_scalar         = rcutoff_scalar-rswitch_scalar;
298     d                = _mm_set1_pd(d_scalar);
299     swV3             = _mm_set1_pd(-10.0/(d_scalar*d_scalar*d_scalar));
300     swV4             = _mm_set1_pd( 15.0/(d_scalar*d_scalar*d_scalar*d_scalar));
301     swV5             = _mm_set1_pd( -6.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
302     /*     #if 'Force' in KERNEL_VF */
303     swF2             = _mm_set1_pd(-30.0/(d_scalar*d_scalar*d_scalar));
304     swF3             = _mm_set1_pd( 60.0/(d_scalar*d_scalar*d_scalar*d_scalar));
305     swF4             = _mm_set1_pd(-30.0/(d_scalar*d_scalar*d_scalar*d_scalar*d_scalar));
306     /*     #endif */
307     /* #endif */
308
309     /* Avoid stupid compiler warnings */
310     jnrA = jnrB = 0;
311     j_coord_offsetA = 0;
312     j_coord_offsetB = 0;
313
314     /* ## Keep track of the floating point operations we issue for reporting! */
315     /* #define OUTERFLOPS 0 */
316     outeriter        = 0;
317     inneriter        = 0;
318
319     /* Start outer loop over neighborlists */
320     for(iidx=0; iidx<nri; iidx++)
321     {
322         /* Load shift vector for this list */
323         i_shift_offset   = DIM*shiftidx[iidx];
324
325         /* Load limits for loop over neighbors */
326         j_index_start    = jindex[iidx];
327         j_index_end      = jindex[iidx+1];
328
329         /* Get outer coordinate index */
330         inr              = iinr[iidx];
331         i_coord_offset   = DIM*inr;
332
333         /* Load i particle coords and add shift vector */
334         /* #if GEOMETRY_I == 'Particle' */
335         gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
336         /* #elif GEOMETRY_I == 'Water3' */
337         gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
338                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2);
339         /* #elif GEOMETRY_I == 'Water4' */
340         /*     #if 0 in PARTICLES_I                 */
341         gmx_mm_load_shift_and_4rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,
342                                                  &ix0,&iy0,&iz0,&ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
343         /*     #else                                */
344         gmx_mm_load_shift_and_3rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset+DIM,
345                                                  &ix1,&iy1,&iz1,&ix2,&iy2,&iz2,&ix3,&iy3,&iz3);
346         /*     #endif                               */
347         /* #endif                                   */
348
349         /* #if 'Force' in KERNEL_VF */
350         /*     #for I in PARTICLES_I */
351         fix{I}             = _mm_setzero_pd();
352         fiy{I}             = _mm_setzero_pd();
353         fiz{I}             = _mm_setzero_pd();
354         /*     #endfor */
355         /* #endif */
356
357         /* ## For water we already preloaded parameters at the start of the kernel */
358         /* #if not 'Water' in GEOMETRY_I */
359         /* Load parameters for i particles */
360         /*     #for I in PARTICLES_ELEC_I */
361         iq{I}              = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+{I}));
362         /*         #define OUTERFLOPS OUTERFLOPS+1 */
363         /*         #if KERNEL_ELEC=='GeneralizedBorn' */
364         isai{I}            = _mm_load1_pd(invsqrta+inr+{I});
365         /*         #endif */
366         /*     #endfor */
367         /*     #for I in PARTICLES_VDW_I */
368         vdwioffset{I}      = 2*nvdwtype*vdwtype[inr+{I}];
369         /*     #endfor */
370         /* #endif */
371
372         /* #if 'Potential' in KERNEL_VF */
373         /* Reset potential sums */
374         /*     #if KERNEL_ELEC != 'None' */
375         velecsum         = _mm_setzero_pd();
376         /*     #endif */
377         /*     #if 'GeneralizedBorn' in KERNEL_ELEC */
378         vgbsum           = _mm_setzero_pd();
379         /*     #endif */
380         /*     #if KERNEL_VDW != 'None' */
381         vvdwsum          = _mm_setzero_pd();
382         /*     #endif */
383         /* #endif */
384         /*     #if 'GeneralizedBorn' in KERNEL_ELEC and 'Force' in KERNEL_VF */
385         dvdasum          = _mm_setzero_pd();
386         /*     #endif */
387
388         /* #for ROUND in ['Loop','Epilogue'] */
389
390         /* #if ROUND =='Loop' */
391         /* Start inner kernel loop */
392         for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
393         {
394         /* ## First round is normal loop (next statement resets indentation) */
395         /*     #if 0 */
396         }
397         /*     #endif */
398         /* #else */
399         if(jidx<j_index_end)
400         {
401         /* ## Second round is epilogue */
402         /* #endif */
403         /* #define INNERFLOPS 0 */
404
405             /* #if ROUND =='Loop' */
406             /* Get j neighbor index, and coordinate index */
407             jnrA             = jjnr[jidx];
408             jnrB             = jjnr[jidx+1];
409             j_coord_offsetA  = DIM*jnrA;
410             j_coord_offsetB  = DIM*jnrB;
411
412             /* load j atom coordinates */
413             /*     #if GEOMETRY_J == 'Particle'             */
414             gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
415                                               &jx0,&jy0,&jz0);
416             /*     #elif GEOMETRY_J == 'Water3'             */
417             gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
418                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
419             /*     #elif GEOMETRY_J == 'Water4'             */
420             /*         #if 0 in PARTICLES_J                 */
421             gmx_mm_load_4rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
422                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
423                                               &jy2,&jz2,&jx3,&jy3,&jz3);
424             /*         #else                                */
425             gmx_mm_load_3rvec_2ptr_swizzle_pd(x+j_coord_offsetA+DIM,x+j_coord_offsetB+DIM,
426                                               &jx1,&jy1,&jz1,&jx2,&jy2,&jz2,&jx3,&jy3,&jz3);
427             /*         #endif                               */
428             /*     #endif                                   */
429             /* #else */
430             jnrA             = jjnr[jidx];
431             j_coord_offsetA  = DIM*jnrA;
432
433             /* load j atom coordinates */
434             /*     #if GEOMETRY_J == 'Particle'             */
435             gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
436                                               &jx0,&jy0,&jz0);
437             /*     #elif GEOMETRY_J == 'Water3'             */
438             gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
439                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,&jy2,&jz2);
440             /*     #elif GEOMETRY_J == 'Water4'             */
441             /*         #if 0 in PARTICLES_J                 */
442             gmx_mm_load_4rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
443                                               &jx0,&jy0,&jz0,&jx1,&jy1,&jz1,&jx2,
444                                               &jy2,&jz2,&jx3,&jy3,&jz3);
445             /*         #else                                */
446             gmx_mm_load_3rvec_1ptr_swizzle_pd(x+j_coord_offsetA+DIM,
447                                               &jx1,&jy1,&jz1,&jx2,&jy2,&jz2,&jx3,&jy3,&jz3);
448             /*         #endif                               */
449             /*     #endif                                   */
450             /* #endif */
451
452             /* Calculate displacement vector */
453             /* #for I,J in PAIRS_IJ */
454             dx{I}{J}             = _mm_sub_pd(ix{I},jx{J});
455             dy{I}{J}             = _mm_sub_pd(iy{I},jy{J});
456             dz{I}{J}             = _mm_sub_pd(iz{I},jz{J});
457             /*     #define INNERFLOPS INNERFLOPS+3 */
458             /* #endfor */
459
460             /* Calculate squared distance and things based on it */
461             /* #for I,J in PAIRS_IJ */
462             rsq{I}{J}            = gmx_mm_calc_rsq_pd(dx{I}{J},dy{I}{J},dz{I}{J});
463             /*     #define INNERFLOPS INNERFLOPS+5 */
464             /* #endfor */
465
466             /* #for I,J in PAIRS_IJ */
467             /*     #if 'rinv' in INTERACTION_FLAGS[I][J] */
468             rinv{I}{J}           = sse41_invsqrt_d(rsq{I}{J});
469             /*         #define INNERFLOPS INNERFLOPS+5 */
470             /*     #endif */
471             /* #endfor */
472
473             /* #for I,J in PAIRS_IJ */
474             /*     #if 'rinvsq' in INTERACTION_FLAGS[I][J] */
475             /*         # if 'rinv' not in INTERACTION_FLAGS[I][J] */
476             rinvsq{I}{J}         = sse41_inv_d(rsq{I}{J});
477             /*             #define INNERFLOPS INNERFLOPS+4 */
478             /*         #else */
479             rinvsq{I}{J}         = _mm_mul_pd(rinv{I}{J},rinv{I}{J});
480             /*             #define INNERFLOPS INNERFLOPS+1 */
481             /*         #endif */
482             /*     #endif */
483             /* #endfor */
484
485             /* #if not 'Water' in GEOMETRY_J */
486             /* Load parameters for j particles */
487             /*     #for J in PARTICLES_ELEC_J */
488             /*         #if ROUND =='Loop' */
489             jq{J}              = gmx_mm_load_2real_swizzle_pd(charge+jnrA+{J},charge+jnrB+{J});
490             /*         #else */
491             jq{J}              = _mm_load_sd(charge+jnrA+{J});
492             /*         #endif */
493             /*         #if KERNEL_ELEC=='GeneralizedBorn' */
494             /*             #if ROUND =='Loop' */
495             isaj{J}            = gmx_mm_load_2real_swizzle_pd(invsqrta+jnrA+{J},invsqrta+jnrB+{J});
496             /*             #else */
497             isaj{J}            = _mm_load_sd(invsqrta+jnrA+{J});
498             /*             #endif */
499             /*         #endif */
500             /*     #endfor */
501             /*     #for J in PARTICLES_VDW_J */
502             vdwjidx{J}A        = 2*vdwtype[jnrA+{J}];
503             /*         #if ROUND =='Loop' */
504             vdwjidx{J}B        = 2*vdwtype[jnrB+{J}];
505             /*         #endif */
506             /*     #endfor */
507             /* #endif */
508
509             /* #if 'Force' in KERNEL_VF and not 'Particle' in GEOMETRY_I */
510             /*     #for J in PARTICLES_J */
511             fjx{J}             = _mm_setzero_pd();
512             fjy{J}             = _mm_setzero_pd();
513             fjz{J}             = _mm_setzero_pd();
514             /*     #endfor */
515             /* #endif */
516
517             /* #for I,J in PAIRS_IJ */
518
519             /**************************
520              * CALCULATE INTERACTIONS *
521              **************************/
522
523             /*     #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
524             /*         ## We always calculate rinv/rinvsq above to enable pipelineing in compilers (performance tested on x86) */
525             if (gmx_mm_any_lt(rsq{I}{J},rcutoff2))
526             {
527                 /*     #if 0    ## this and the next two lines is a hack to maintain auto-indentation in template file */
528             }
529             /*         #endif */
530             /*         #define INNERFLOPS INNERFLOPS+1 */
531             /*     #endif */
532
533             /*     #if 'r' in INTERACTION_FLAGS[I][J] */
534             r{I}{J}              = _mm_mul_pd(rsq{I}{J},rinv{I}{J});
535              /*         #define INNERFLOPS INNERFLOPS+1 */
536             /*     #endif */
537
538             /*     ## For water geometries we already loaded parameters at the start of the kernel */
539             /*     #if not 'Water' in GEOMETRY_J */
540             /* Compute parameters for interactions between i and j atoms */
541             /*         #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
542             qq{I}{J}             = _mm_mul_pd(iq{I},jq{J});
543             /*             #define INNERFLOPS INNERFLOPS+1 */
544             /*         #endif */
545             /*         #if 'vdw' in INTERACTION_FLAGS[I][J] */
546             /*             #if ROUND == 'Loop' */
547             gmx_mm_load_2pair_swizzle_pd(vdwparam+vdwioffset{I}+vdwjidx{J}A,
548                                          vdwparam+vdwioffset{I}+vdwjidx{J}B,&c6_{I}{J},&c12_{I}{J});
549             /*                 #if 'LJEwald' in KERNEL_VDW */
550             c6grid_{I}{J}       = gmx_mm_load_2real_swizzle_pd(vdwgridparam+vdwioffset{I}+vdwjidx{J}A,
551                                                                vdwgridparam+vdwioffset{I}+vdwjidx{J}B);
552             /*                 #endif */
553             /*             #else */
554             gmx_mm_load_1pair_swizzle_pd(vdwparam+vdwioffset{I}+vdwjidx{J}A,&c6_{I}{J},&c12_{I}{J});
555
556             /*                 #if 'LJEwald' in KERNEL_VDW */
557             c6grid_{I}{J}       = gmx_mm_load_1real_pd(vdwgridparam+vdwioffset{I}+vdwjidx{J}A);
558             /*                 #endif */
559             /*             #endif */
560             /*         #endif */
561             /*     #endif */
562
563             /*     #if 'table' in INTERACTION_FLAGS[I][J] */
564             /* Calculate table index by multiplying r with table scale and truncate to integer */
565             rt               = _mm_mul_pd(r{I}{J},vftabscale);
566             vfitab           = _mm_cvttpd_epi32(rt);
567             vfeps            = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
568             /*         #define INNERFLOPS INNERFLOPS+4                          */
569             /*         #if 'Table' in KERNEL_ELEC and 'Table' in KERNEL_VDW     */
570             /*             ## 3 tables, 4 data per point: multiply index by 12 */
571             vfitab           = _mm_slli_epi32(_mm_add_epi32(vfitab,_mm_slli_epi32(vfitab,1)),2);
572             /*         #elif 'Table' in KERNEL_ELEC                             */
573             /*             ## 1 table, 4 data per point: multiply index by 4   */
574             vfitab           = _mm_slli_epi32(vfitab,2);
575             /*         #elif 'Table' in KERNEL_VDW                              */
576             /*             ## 2 tables, 4 data per point: multiply index by 8  */
577             vfitab           = _mm_slli_epi32(vfitab,3);
578             /*         #endif                                                   */
579             /*     #endif */
580
581             /*     ## ELECTROSTATIC INTERACTIONS */
582             /*     #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
583
584             /*         #if KERNEL_ELEC=='Coulomb' */
585
586             /* COULOMB ELECTROSTATICS */
587             velec            = _mm_mul_pd(qq{I}{J},rinv{I}{J});
588             /*             #define INNERFLOPS INNERFLOPS+1 */
589             /*             #if 'Force' in KERNEL_VF */
590             felec            = _mm_mul_pd(velec,rinvsq{I}{J});
591             /*                 #define INNERFLOPS INNERFLOPS+2 */
592             /*             #endif */
593
594             /*         #elif KERNEL_ELEC=='ReactionField' */
595
596             /* REACTION-FIELD ELECTROSTATICS */
597             /*             #if 'Potential' in KERNEL_VF */
598             velec            = _mm_mul_pd(qq{I}{J},_mm_sub_pd(_mm_add_pd(rinv{I}{J},_mm_mul_pd(krf,rsq{I}{J})),crf));
599             /*                 #define INNERFLOPS INNERFLOPS+4 */
600             /*             #endif */
601             /*             #if 'Force' in KERNEL_VF */
602             felec            = _mm_mul_pd(qq{I}{J},_mm_sub_pd(_mm_mul_pd(rinv{I}{J},rinvsq{I}{J}),krf2));
603             /*                 #define INNERFLOPS INNERFLOPS+3 */
604             /*             #endif */
605
606             /*         #elif KERNEL_ELEC=='GeneralizedBorn' */
607
608             /* GENERALIZED BORN AND COULOMB ELECTROSTATICS */
609             isaprod          = _mm_mul_pd(isai{I},isaj{J});
610             gbqqfactor       = _mm_xor_pd(signbit,_mm_mul_pd(qq{I}{J},_mm_mul_pd(isaprod,gbinvepsdiff)));
611             gbscale          = _mm_mul_pd(isaprod,gbtabscale);
612             /*             #define INNERFLOPS INNERFLOPS+5 */
613
614             /* Calculate generalized born table index - this is a separate table from the normal one,
615              * but we use the same procedure by multiplying r with scale and truncating to integer.
616              */
617             rt               = _mm_mul_pd(r{I}{J},gbscale);
618             gbitab           = _mm_cvttpd_epi32(rt);
619             gbeps            = _mm_sub_pd(rt,_mm_round_pd(rt, _MM_FROUND_FLOOR));
620             gbitab           = _mm_slli_epi32(gbitab,2);
621
622             Y                = _mm_load_pd( gbtab + gmx_mm_extract_epi32(gbitab,0) );
623             /*             #if ROUND == 'Loop' */
624             F                = _mm_load_pd( gbtab + gmx_mm_extract_epi32(gbitab,1) );
625             /*             #else */
626             F                = _mm_setzero_pd();
627             /*             #endif */
628             GMX_MM_TRANSPOSE2_PD(Y,F);
629             G                = _mm_load_pd( gbtab + gmx_mm_extract_epi32(gbitab,0) +2);
630             /*             #if ROUND == 'Loop' */
631             H                = _mm_load_pd( gbtab + gmx_mm_extract_epi32(gbitab,1) +2);
632             /*             #else */
633             H                = _mm_setzero_pd();
634             /*             #endif */
635             GMX_MM_TRANSPOSE2_PD(G,H);
636             Heps             = _mm_mul_pd(gbeps,H);
637             Fp               = _mm_add_pd(F,_mm_mul_pd(gbeps,_mm_add_pd(G,Heps)));
638             VV               = _mm_add_pd(Y,_mm_mul_pd(gbeps,Fp));
639             vgb              = _mm_mul_pd(gbqqfactor,VV);
640             /*             #define INNERFLOPS INNERFLOPS+10 */
641
642             /*             #if 'Force' in KERNEL_VF */
643             FF               = _mm_add_pd(Fp,_mm_mul_pd(gbeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
644             fgb              = _mm_mul_pd(gbqqfactor,_mm_mul_pd(FF,gbscale));
645             dvdatmp          = _mm_mul_pd(minushalf,_mm_add_pd(vgb,_mm_mul_pd(fgb,r{I}{J})));
646             /*                 #if ROUND == 'Epilogue' */
647             dvdatmp          = _mm_unpacklo_pd(dvdatmp,_mm_setzero_pd());
648             /*                 #endif */
649             dvdasum          = _mm_add_pd(dvdasum,dvdatmp);
650             /*             #if ROUND == 'Loop' */
651             gmx_mm_increment_2real_swizzle_pd(dvda+jnrA,dvda+jnrB,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj{J},isaj{J})));
652             /*             #else */
653             gmx_mm_increment_1real_pd(dvda+jnrA,_mm_mul_pd(dvdatmp,_mm_mul_pd(isaj{J},isaj{J})));
654             /*             #endif */
655             /*                 #define INNERFLOPS INNERFLOPS+13 */
656             /*             #endif */
657             velec            = _mm_mul_pd(qq{I}{J},rinv{I}{J});
658             /*                 #define INNERFLOPS INNERFLOPS+1 */
659             /*             #if 'Force' in KERNEL_VF */
660             felec            = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(velec,rinv{I}{J}),fgb),rinv{I}{J});
661             /*                 #define INNERFLOPS INNERFLOPS+3 */
662             /*             #endif */
663
664             /*         #elif KERNEL_ELEC=='Ewald' */
665             /* EWALD ELECTROSTATICS */
666
667             /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
668             ewrt             = _mm_mul_pd(r{I}{J},ewtabscale);
669             ewitab           = _mm_cvttpd_epi32(ewrt);
670             eweps            = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
671             /*             #define INNERFLOPS INNERFLOPS+4 */
672             /*             #if 'Potential' in KERNEL_VF or KERNEL_MOD_ELEC=='PotentialSwitch' */
673             ewitab           = _mm_slli_epi32(ewitab,2);
674             ewtabF           = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
675             /*                 #if ROUND == 'Loop' */
676             ewtabD           = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
677             /*                 #else */
678             ewtabD           = _mm_setzero_pd();
679             /*                 #endif */
680             GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
681             ewtabV           = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
682             /*                 #if ROUND == 'Loop' */
683             ewtabFn          = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
684             /*                 #else */
685             ewtabFn          = _mm_setzero_pd();
686             /*                 #endif */
687             GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
688             felec            = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
689             /*                 #define INNERFLOPS INNERFLOPS+2 */
690             /*                 #if KERNEL_MOD_ELEC=='PotentialShift' */
691             velec            = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
692             velec            = _mm_mul_pd(qq{I}{J},_mm_sub_pd(_mm_sub_pd(rinv{I}{J},sh_ewald),velec));
693             /*                     #define INNERFLOPS INNERFLOPS+7 */
694             /*                 #else */
695             velec            = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
696             velec            = _mm_mul_pd(qq{I}{J},_mm_sub_pd(rinv{I}{J},velec));
697             /*                     #define INNERFLOPS INNERFLOPS+6 */
698             /*                 #endif */
699             /*                 #if 'Force' in KERNEL_VF */
700             felec            = _mm_mul_pd(_mm_mul_pd(qq{I}{J},rinv{I}{J}),_mm_sub_pd(rinvsq{I}{J},felec));
701             /*                      #define INNERFLOPS INNERFLOPS+3 */
702             /*                 #endif */
703             /*             #elif KERNEL_VF=='Force' */
704             /*                 #if ROUND == 'Loop' */
705             gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
706                                          &ewtabF,&ewtabFn);
707             /*                 #else */
708             gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
709             /*                 #endif */
710             felec            = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
711             felec            = _mm_mul_pd(_mm_mul_pd(qq{I}{J},rinv{I}{J}),_mm_sub_pd(rinvsq{I}{J},felec));
712             /*                 #define INNERFLOPS INNERFLOPS+7 */
713             /*             #endif */
714
715             /*         #elif KERNEL_ELEC=='CubicSplineTable' */
716
717             /* CUBIC SPLINE TABLE ELECTROSTATICS */
718             Y                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
719             /*             #if ROUND == 'Loop' */
720             F                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
721             /*             #else */
722             F                = _mm_setzero_pd();
723             /*             #endif */
724             GMX_MM_TRANSPOSE2_PD(Y,F);
725             G                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
726             /*             #if ROUND == 'Loop' */
727             H                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
728             /*             #else */
729             H                = _mm_setzero_pd();
730             /*             #endif */
731             GMX_MM_TRANSPOSE2_PD(G,H);
732             Heps             = _mm_mul_pd(vfeps,H);
733             Fp               = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
734             /*             #define INNERFLOPS INNERFLOPS+4 */
735             /*             #if 'Potential' in KERNEL_VF */
736             VV               = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
737             velec            = _mm_mul_pd(qq{I}{J},VV);
738             /*                 #define INNERFLOPS INNERFLOPS+3 */
739             /*             #endif */
740             /*             #if 'Force' in KERNEL_VF */
741             FF               = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
742             felec            = _mm_xor_pd(signbit,_mm_mul_pd(_mm_mul_pd(qq{I}{J},FF),_mm_mul_pd(vftabscale,rinv{I}{J})));
743             /*                 #define INNERFLOPS INNERFLOPS+7 */
744             /*             #endif */
745             /*         #endif */
746             /*         ## End of check for electrostatics interaction forms */
747             /*     #endif */
748             /*     ## END OF ELECTROSTATIC INTERACTION CHECK FOR PAIR I-J */
749
750             /*     #if 'vdw' in INTERACTION_FLAGS[I][J] */
751
752             /*         #if KERNEL_VDW=='LennardJones' */
753
754             /* LENNARD-JONES DISPERSION/REPULSION */
755
756             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq{I}{J},rinvsq{I}{J}),rinvsq{I}{J});
757             /*             #define INNERFLOPS INNERFLOPS+2 */
758             /*             #if 'Potential' in KERNEL_VF or KERNEL_MOD_VDW=='PotentialSwitch' */
759             vvdw6            = _mm_mul_pd(c6_{I}{J},rinvsix);
760             vvdw12           = _mm_mul_pd(c12_{I}{J},_mm_mul_pd(rinvsix,rinvsix));
761             /*                 #define INNERFLOPS INNERFLOPS+3 */
762             /*                 #if KERNEL_MOD_VDW=='PotentialShift' */
763             vvdw             = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_{I}{J},_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))), one_twelfth) ,
764                                           _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_mul_pd(c6_{I}{J},sh_vdw_invrcut6)),one_sixth));
765             /*                     #define INNERFLOPS INNERFLOPS+8 */
766             /*                 #else */
767             vvdw             = _mm_sub_pd( _mm_mul_pd(vvdw12,one_twelfth) , _mm_mul_pd(vvdw6,one_sixth) );
768             /*                     #define INNERFLOPS INNERFLOPS+3 */
769             /*                 #endif */
770             /*                 ## Check for force inside potential check, i.e. this means we already did the potential part */
771             /*                 #if 'Force' in KERNEL_VF */
772             fvdw             = _mm_mul_pd(_mm_sub_pd(vvdw12,vvdw6),rinvsq{I}{J});
773             /*                     #define INNERFLOPS INNERFLOPS+2 */
774             /*                 #endif */
775             /*             #elif KERNEL_VF=='Force' */
776             /*                 ## Force-only LennardJones makes it possible to save 1 flop (they do add up...) */
777             fvdw             = _mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_{I}{J},rinvsix),c6_{I}{J}),_mm_mul_pd(rinvsix,rinvsq{I}{J}));
778             /*                 #define INNERFLOPS INNERFLOPS+4 */
779             /*             #endif */
780
781             /*         #elif KERNEL_VDW=='CubicSplineTable' */
782
783             /* CUBIC SPLINE TABLE DISPERSION */
784             /*             #if 'Table' in KERNEL_ELEC */
785             vfitab           = _mm_add_epi32(vfitab,ifour);
786             /*             #endif                     */
787             Y                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
788             /*             #if ROUND == 'Loop' */
789             F                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
790             /*             #else */
791             F                = _mm_setzero_pd();
792             /*             #endif */
793             GMX_MM_TRANSPOSE2_PD(Y,F);
794             G                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
795             /*             #if ROUND == 'Loop' */
796             H                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
797             /*             #else */
798             H                = _mm_setzero_pd();
799             /*             #endif */
800             GMX_MM_TRANSPOSE2_PD(G,H);
801             Heps             = _mm_mul_pd(vfeps,H);
802             Fp               = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
803             /*             #define INNERFLOPS INNERFLOPS+4 */
804             /*             #if 'Potential' in KERNEL_VF */
805             VV               = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
806             vvdw6            = _mm_mul_pd(c6_{I}{J},VV);
807             /*                 #define INNERFLOPS INNERFLOPS+3 */
808             /*             #endif */
809             /*             #if 'Force' in KERNEL_VF */
810             FF               = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
811             fvdw6            = _mm_mul_pd(c6_{I}{J},FF);
812             /*                 #define INNERFLOPS INNERFLOPS+4 */
813             /*             #endif */
814
815             /* CUBIC SPLINE TABLE REPULSION */
816             vfitab           = _mm_add_epi32(vfitab,ifour);
817             Y                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) );
818             /*             #if ROUND == 'Loop' */
819             F                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) );
820             /*             #else */
821             F                = _mm_setzero_pd();
822             /*             #endif */
823             GMX_MM_TRANSPOSE2_PD(Y,F);
824             G                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,0) +2);
825             /*             #if ROUND == 'Loop' */
826             H                = _mm_load_pd( vftab + gmx_mm_extract_epi32(vfitab,1) +2);
827             /*             #else */
828             H                = _mm_setzero_pd();
829             /*             #endif */
830             GMX_MM_TRANSPOSE2_PD(G,H);
831             Heps             = _mm_mul_pd(vfeps,H);
832             Fp               = _mm_add_pd(F,_mm_mul_pd(vfeps,_mm_add_pd(G,Heps)));
833             /*             #define INNERFLOPS INNERFLOPS+4 */
834             /*             #if 'Potential' in KERNEL_VF */
835             VV               = _mm_add_pd(Y,_mm_mul_pd(vfeps,Fp));
836             vvdw12           = _mm_mul_pd(c12_{I}{J},VV);
837             /*                 #define INNERFLOPS INNERFLOPS+3 */
838             /*             #endif */
839             /*             #if 'Force' in KERNEL_VF */
840             FF               = _mm_add_pd(Fp,_mm_mul_pd(vfeps,_mm_add_pd(G,_mm_add_pd(Heps,Heps))));
841             fvdw12           = _mm_mul_pd(c12_{I}{J},FF);
842             /*                 #define INNERFLOPS INNERFLOPS+5 */
843             /*             #endif */
844             /*             #if 'Potential' in KERNEL_VF */
845             vvdw             = _mm_add_pd(vvdw12,vvdw6);
846             /*                 #define INNERFLOPS INNERFLOPS+1 */
847             /*             #endif */
848             /*             #if 'Force' in KERNEL_VF */
849             fvdw             = _mm_xor_pd(signbit,_mm_mul_pd(_mm_add_pd(fvdw6,fvdw12),_mm_mul_pd(vftabscale,rinv{I}{J})));
850             /*                 #define INNERFLOPS INNERFLOPS+4 */
851             /*             #endif */
852
853
854            /*         #elif KERNEL_VDW=='LJEwald' */
855
856             /* Analytical LJ-PME */
857             rinvsix          = _mm_mul_pd(_mm_mul_pd(rinvsq{I}{J},rinvsq{I}{J}),rinvsq{I}{J});
858             ewcljrsq         = _mm_mul_pd(ewclj2,rsq{I}{J});
859             ewclj6           = _mm_mul_pd(ewclj2,_mm_mul_pd(ewclj2,ewclj2));
860             exponent         = sse41_exp_d(ewcljrsq);
861             /* poly = exp(-(beta*r)^2) * (1 + (beta*r)^2 + (beta*r)^4 /2) */
862             poly             = _mm_mul_pd(exponent,_mm_add_pd(_mm_sub_pd(one,ewcljrsq),_mm_mul_pd(_mm_mul_pd(ewcljrsq,ewcljrsq),one_half)));
863             /*                 #define INNERFLOPS INNERFLOPS+11 */
864             /*             #if 'Potential' in KERNEL_VF or KERNEL_MOD_VDW=='PotentialSwitch'*/
865             /* vvdw6 = [C6 - C6grid * (1-poly)]/r6 */
866             vvdw6            = _mm_mul_pd(_mm_sub_pd(c6_{I}{J},_mm_mul_pd(c6grid_{I}{J},_mm_sub_pd(one,poly))),rinvsix);
867             vvdw12           = _mm_mul_pd(c12_{I}{J},_mm_mul_pd(rinvsix,rinvsix));
868             /*                 #define INNERFLOPS INNERFLOPS+6 */
869             /*                 #if KERNEL_MOD_VDW=='PotentialShift' */
870             vvdw             = _mm_sub_pd(_mm_mul_pd( _mm_sub_pd(vvdw12 , _mm_mul_pd(c12_{I}{J},_mm_mul_pd(sh_vdw_invrcut6,sh_vdw_invrcut6))),one_twelfth),
871                                _mm_mul_pd( _mm_sub_pd(vvdw6,_mm_add_pd(_mm_mul_pd(c6_{I}{J},sh_vdw_invrcut6),_mm_mul_pd(c6grid_{I}{J},sh_lj_ewald))),one_sixth));
872             /*                 #define INNERFLOPS INNERFLOPS+9 */
873             /*                 #else */
874             vvdw             = _mm_sub_pd(_mm_mul_pd(vvdw12,one_twelfth),_mm_mul_pd(vvdw6,one_sixth));
875             /*                 #define INNERFLOPS INNERFLOPS+3 */
876             /*                 #endif */
877             /*                  ## Check for force inside potential check, i.e. this means we already did the potential part */
878             /*                  #if 'Force' in KERNEL_VF */
879             /* fvdw = vvdw12/r - (vvdw6/r + (C6grid * exponent * beta^6)/r) */
880             fvdw             = _mm_mul_pd(_mm_sub_pd(vvdw12,_mm_sub_pd(vvdw6,_mm_mul_pd(_mm_mul_pd(c6grid_{I}{J},one_sixth),_mm_mul_pd(exponent,ewclj6)))),rinvsq{I}{J});
881             /*                 #define INNERFLOPS INNERFLOPS+6 */
882             /*                  #endif */
883             /*              #elif KERNEL_VF=='Force' */
884             /* f6A = 6 * C6grid * (1 - poly) */
885             f6A              = _mm_mul_pd(c6grid_{I}{J},_mm_sub_pd(one,poly));
886             /* f6B = C6grid * exponent * beta^6 */
887             f6B              = _mm_mul_pd(_mm_mul_pd(c6grid_{I}{J},one_sixth),_mm_mul_pd(exponent,ewclj6));
888             /* fvdw = 12*C12/r13 - ((6*C6 - f6A)/r6 + f6B)/r */
889             fvdw              = _mm_mul_pd(_mm_add_pd(_mm_mul_pd(_mm_sub_pd(_mm_mul_pd(c12_{I}{J},rinvsix),_mm_sub_pd(c6_{I}{J},f6A)),rinvsix),f6B),rinvsq{I}{J});
890             /*                 #define INNERFLOPS INNERFLOPS+11 */
891             /*              #endif */
892             /*         #endif */
893             /*         ## End of check for vdw interaction forms */
894             /*     #endif */
895             /*     ## END OF VDW INTERACTION CHECK FOR PAIR I-J */
896
897             /*     #if 'switch' in INTERACTION_FLAGS[I][J] */
898             d                = _mm_sub_pd(r{I}{J},rswitch);
899             d                = _mm_max_pd(d,_mm_setzero_pd());
900             d2               = _mm_mul_pd(d,d);
901             sw               = _mm_add_pd(one,_mm_mul_pd(d2,_mm_mul_pd(d,_mm_add_pd(swV3,_mm_mul_pd(d,_mm_add_pd(swV4,_mm_mul_pd(d,swV5)))))));
902             /*         #define INNERFLOPS INNERFLOPS+10 */
903
904             /*         #if 'Force' in KERNEL_VF */
905             dsw              = _mm_mul_pd(d2,_mm_add_pd(swF2,_mm_mul_pd(d,_mm_add_pd(swF3,_mm_mul_pd(d,swF4)))));
906             /*             #define INNERFLOPS INNERFLOPS+5 */
907             /*         #endif */
908
909             /* Evaluate switch function */
910             /*         #if 'Force' in KERNEL_VF */
911             /* fscal'=f'/r=-(v*sw)'/r=-(v'*sw+v*dsw)/r=-v'*sw/r-v*dsw/r=fscal*sw-v*dsw/r */
912             /*             #if 'electrostatics' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_ELEC=='PotentialSwitch' */
913             felec            = _mm_sub_pd( _mm_mul_pd(felec,sw) , _mm_mul_pd(rinv{I}{J},_mm_mul_pd(velec,dsw)) );
914             /*                 #define INNERFLOPS INNERFLOPS+4 */
915             /*             #endif */
916             /*             #if 'vdw' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_VDW=='PotentialSwitch' */
917             fvdw             = _mm_sub_pd( _mm_mul_pd(fvdw,sw) , _mm_mul_pd(rinv{I}{J},_mm_mul_pd(vvdw,dsw)) );
918             /*                 #define INNERFLOPS INNERFLOPS+4 */
919             /*             #endif */
920             /*         #endif */
921             /*         #if 'Potential' in KERNEL_VF */
922             /*             #if 'electrostatics' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_ELEC=='PotentialSwitch' */
923             velec            = _mm_mul_pd(velec,sw);
924             /*                 #define INNERFLOPS INNERFLOPS+1 */
925             /*             #endif */
926             /*             #if 'vdw' in INTERACTION_FLAGS[I][J] and KERNEL_MOD_VDW=='PotentialSwitch' */
927             vvdw             = _mm_mul_pd(vvdw,sw);
928             /*                 #define INNERFLOPS INNERFLOPS+1 */
929             /*             #endif */
930             /*         #endif */
931             /*     #endif */
932             /*     #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
933             cutoff_mask      = _mm_cmplt_pd(rsq{I}{J},rcutoff2);
934             /*         #define INNERFLOPS INNERFLOPS+1 */
935             /*     #endif */
936
937             /*     #if 'Potential' in KERNEL_VF */
938             /* Update potential sum for this i atom from the interaction with this j atom. */
939             /*         #if 'electrostatics' in INTERACTION_FLAGS[I][J] */
940             /*             #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
941             velec            = _mm_and_pd(velec,cutoff_mask);
942             /*                 #define INNERFLOPS INNERFLOPS+1 */
943             /*             #endif                                       */
944             /*             #if ROUND == 'Epilogue' */
945             velec            = _mm_unpacklo_pd(velec,_mm_setzero_pd());
946             /*             #endif */
947             velecsum         = _mm_add_pd(velecsum,velec);
948             /*             #define INNERFLOPS INNERFLOPS+1 */
949             /*             #if KERNEL_ELEC=='GeneralizedBorn' */
950             /*             #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
951             vgb              = _mm_and_pd(vgb,cutoff_mask);
952             /*                 #define INNERFLOPS INNERFLOPS+1 */
953             /*             #endif                                       */
954             /*             #if ROUND == 'Epilogue' */
955             vgb              = _mm_unpacklo_pd(vgb,_mm_setzero_pd());
956             /*             #endif */
957             vgbsum           = _mm_add_pd(vgbsum,vgb);
958             /*                 #define INNERFLOPS INNERFLOPS+1 */
959             /*             #endif */
960             /*         #endif */
961             /*         #if 'vdw' in INTERACTION_FLAGS[I][J] */
962             /*             #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
963             vvdw             = _mm_and_pd(vvdw,cutoff_mask);
964             /*                 #define INNERFLOPS INNERFLOPS+1 */
965             /*             #endif                                       */
966             /*             #if ROUND == 'Epilogue' */
967             vvdw             = _mm_unpacklo_pd(vvdw,_mm_setzero_pd());
968             /*             #endif */
969             vvdwsum          = _mm_add_pd(vvdwsum,vvdw);
970             /*             #define INNERFLOPS INNERFLOPS+1 */
971             /*         #endif */
972             /*     #endif */
973
974             /*     #if 'Force' in KERNEL_VF */
975
976             /*         #if 'electrostatics' in INTERACTION_FLAGS[I][J] and 'vdw' in INTERACTION_FLAGS[I][J] */
977             fscal            = _mm_add_pd(felec,fvdw);
978             /*             #define INNERFLOPS INNERFLOPS+1 */
979             /*         #elif 'electrostatics' in INTERACTION_FLAGS[I][J] */
980             fscal            = felec;
981             /*         #elif 'vdw' in INTERACTION_FLAGS[I][J] */
982             fscal            = fvdw;
983             /*        #endif */
984
985             /*             #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
986             fscal            = _mm_and_pd(fscal,cutoff_mask);
987             /*                 #define INNERFLOPS INNERFLOPS+1 */
988             /*             #endif                                       */
989
990             /*             #if ROUND == 'Epilogue' */
991             fscal            = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
992             /*             #endif */
993
994             /* Calculate temporary vectorial force */
995             tx               = _mm_mul_pd(fscal,dx{I}{J});
996             ty               = _mm_mul_pd(fscal,dy{I}{J});
997             tz               = _mm_mul_pd(fscal,dz{I}{J});
998
999             /* Update vectorial force */
1000             fix{I}             = _mm_add_pd(fix{I},tx);
1001             fiy{I}             = _mm_add_pd(fiy{I},ty);
1002             fiz{I}             = _mm_add_pd(fiz{I},tz);
1003             /*             #define INNERFLOPS INNERFLOPS+6 */
1004
1005             /* #if GEOMETRY_I == 'Particle'             */
1006             /*     #if ROUND == 'Loop' */
1007             gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,tx,ty,tz);
1008             /*     #else */
1009             gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,tx,ty,tz);
1010             /*     #endif */
1011             /*     #define INNERFLOPS INNERFLOPS+3      */
1012             /* #else                                    */
1013             fjx{J}             = _mm_add_pd(fjx{J},tx);
1014             fjy{J}             = _mm_add_pd(fjy{J},ty);
1015             fjz{J}             = _mm_add_pd(fjz{J},tz);
1016             /*     #define INNERFLOPS INNERFLOPS+3      */
1017             /* #endif                                   */
1018
1019             /*     #endif */
1020
1021             /*     #if 'exactcutoff' in INTERACTION_FLAGS[I][J] */
1022             /*         #if 0    ## This and next two lines is a hack to maintain indentation in template file */
1023             {
1024                 /*     #endif */
1025             }
1026             /*     #endif */
1027             /*    ## End of check for the interaction being outside the cutoff */
1028
1029             /* #endfor */
1030             /* ## End of loop over i-j interaction pairs */
1031
1032             /* #if 'Water' in GEOMETRY_I and GEOMETRY_J == 'Particle' */
1033             /*     #if ROUND == 'Loop' */
1034             gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0);
1035             /*     #else */
1036             gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0);
1037             /*     #endif */
1038             /*     #define INNERFLOPS INNERFLOPS+3      */
1039             /* #elif GEOMETRY_J == 'Water3'             */
1040             /*     #if ROUND == 'Loop' */
1041             gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1042             /*     #else */
1043             gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2);
1044             /*     #endif */
1045             /*     #define INNERFLOPS INNERFLOPS+9      */
1046             /* #elif GEOMETRY_J == 'Water4'             */
1047             /*     #if 0 in PARTICLES_J                 */
1048             /*         #if ROUND == 'Loop' */
1049             gmx_mm_decrement_4rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1050             /*         #else */
1051             gmx_mm_decrement_4rvec_1ptr_swizzle_pd(f+j_coord_offsetA,fjx0,fjy0,fjz0,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1052             /*         #endif */
1053             /*         #define INNERFLOPS INNERFLOPS+12 */
1054             /*     #else                                */
1055             /*         #if ROUND == 'Loop' */
1056             gmx_mm_decrement_3rvec_2ptr_swizzle_pd(f+j_coord_offsetA+DIM,f+j_coord_offsetB+DIM,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1057             /*         #else */
1058             gmx_mm_decrement_3rvec_1ptr_swizzle_pd(f+j_coord_offsetA+DIM,fjx1,fjy1,fjz1,fjx2,fjy2,fjz2,fjx3,fjy3,fjz3);
1059             /*         #endif */
1060             /*         #define INNERFLOPS INNERFLOPS+9  */
1061             /*     #endif                               */
1062             /* #endif                                   */
1063
1064             /* Inner loop uses {INNERFLOPS} flops */
1065         }
1066
1067         /* #endfor */
1068
1069         /* End of innermost loop */
1070
1071         /* #if 'Force' in KERNEL_VF */
1072         /*     #if GEOMETRY_I == 'Particle'            */
1073         gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
1074                                               f+i_coord_offset,fshift+i_shift_offset);
1075         /*         #define OUTERFLOPS OUTERFLOPS+6     */
1076         /*     #elif GEOMETRY_I == 'Water3'            */
1077         gmx_mm_update_iforce_3atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,
1078                                               f+i_coord_offset,fshift+i_shift_offset);
1079         /*         #define OUTERFLOPS OUTERFLOPS+18    */
1080         /*     #elif GEOMETRY_I == 'Water4'            */
1081         /*         #if 0 in PARTICLES_I                */
1082         gmx_mm_update_iforce_4atom_swizzle_pd(fix0,fiy0,fiz0,fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1083                                               f+i_coord_offset,fshift+i_shift_offset);
1084         /*             #define OUTERFLOPS OUTERFLOPS+24    */
1085         /*         #else                               */
1086         gmx_mm_update_iforce_3atom_swizzle_pd(fix1,fiy1,fiz1,fix2,fiy2,fiz2,fix3,fiy3,fiz3,
1087                                               f+i_coord_offset+DIM,fshift+i_shift_offset);
1088         /*             #define OUTERFLOPS OUTERFLOPS+18    */
1089         /*         #endif                              */
1090         /*     #endif                                  */
1091         /* #endif                                      */
1092
1093         /* #if 'Potential' in KERNEL_VF */
1094         ggid                        = gid[iidx];
1095         /* Update potential energies */
1096         /*     #if KERNEL_ELEC != 'None' */
1097         gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
1098         /*         #define OUTERFLOPS OUTERFLOPS+1 */
1099         /*     #endif */
1100         /*     #if 'GeneralizedBorn' in KERNEL_ELEC */
1101         gmx_mm_update_1pot_pd(vgbsum,kernel_data->energygrp_polarization+ggid);
1102         /*         #define OUTERFLOPS OUTERFLOPS+1 */
1103         /*     #endif */
1104         /*     #if KERNEL_VDW != 'None' */
1105         gmx_mm_update_1pot_pd(vvdwsum,kernel_data->energygrp_vdw+ggid);
1106         /*         #define OUTERFLOPS OUTERFLOPS+1 */
1107         /*     #endif */
1108         /* #endif */
1109         /*     #if 'GeneralizedBorn' in KERNEL_ELEC and 'Force' in KERNEL_VF */
1110         dvdasum = _mm_mul_pd(dvdasum, _mm_mul_pd(isai{I},isai{I}));
1111         gmx_mm_update_1pot_pd(dvdasum,dvda+inr);
1112         /*     #endif */
1113
1114         /* Increment number of inner iterations */
1115         inneriter                  += j_index_end - j_index_start;
1116
1117         /* Outer loop uses {OUTERFLOPS} flops */
1118     }
1119
1120     /* Increment number of outer iterations */
1121     outeriter        += nri;
1122
1123     /* Update outer/inner flops */
1124     /* ## NB: This is not important, it just affects the flopcount. However, since our preprocessor is */
1125     /* ## primitive and replaces aggressively even in strings inside these directives, we need to      */
1126     /* ## assemble the main part of the name (containing KERNEL/ELEC/VDW) directly in the source.      */
1127     /* #if GEOMETRY_I == 'Water3'            */
1128     /*     #define ISUFFIX '_W3'             */
1129     /* #elif GEOMETRY_I == 'Water4'          */
1130     /*     #define ISUFFIX '_W4'             */
1131     /* #else                                 */
1132     /*     #define ISUFFIX ''                */
1133     /* #endif                                */
1134     /* #if GEOMETRY_J == 'Water3'            */
1135     /*     #define JSUFFIX 'W3'              */
1136     /* #elif GEOMETRY_J == 'Water4'          */
1137     /*     #define JSUFFIX 'W4'              */
1138     /* #else                                 */
1139     /*     #define JSUFFIX ''                */
1140     /* #endif                                */
1141     /* #if 'PotentialAndForce' in KERNEL_VF  */
1142     /*     #define VFSUFFIX  '_VF'           */
1143     /* #elif 'Potential' in KERNEL_VF        */
1144     /*     #define VFSUFFIX '_V'             */
1145     /* #else                                 */
1146     /*     #define VFSUFFIX '_F'             */
1147     /* #endif                                */
1148
1149     /* #if KERNEL_ELEC != 'None' and KERNEL_VDW != 'None' */
1150     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VDW{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});
1151     /* #elif KERNEL_ELEC != 'None' */
1152     inc_nrnb(nrnb,eNR_NBKERNEL_ELEC{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});
1153     /* #else */
1154     inc_nrnb(nrnb,eNR_NBKERNEL_VDW{ISUFFIX}{JSUFFIX}{VFSUFFIX},outeriter*{OUTERFLOPS} + inneriter*{INNERFLOPS});
1155     /* #endif  */
1156 }