2 * Note: this file was generated by the Gromacs sse4_1_double kernel generator.
4 * This source code is part of
8 * Copyright (c) 2001-2012, The GROMACS Development Team
10 * Gromacs is a library for molecular simulation and trajectory analysis,
11 * written by Erik Lindahl, David van der Spoel, Berk Hess, and others - for
12 * a full list of developers and information, check out http://www.gromacs.org
14 * This program is free software; you can redistribute it and/or modify it under
15 * the terms of the GNU Lesser General Public License as published by the Free
16 * Software Foundation; either version 2 of the License, or (at your option) any
19 * To help fund GROMACS development, we humbly ask that you cite
20 * the papers people have written on it - you can find them on the website.
28 #include "../nb_kernel.h"
29 #include "types/simple.h"
33 #include "gmx_math_x86_sse4_1_double.h"
34 #include "kernelutil_x86_sse4_1_double.h"
37 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomP1P1_VF_sse4_1_double
38 * Electrostatics interaction: Ewald
39 * VdW interaction: None
40 * Geometry: Particle-Particle
41 * Calculate force/pot: PotentialAndForce
44 nb_kernel_ElecEw_VdwNone_GeomP1P1_VF_sse4_1_double
45 (t_nblist * gmx_restrict nlist,
46 rvec * gmx_restrict xx,
47 rvec * gmx_restrict ff,
48 t_forcerec * gmx_restrict fr,
49 t_mdatoms * gmx_restrict mdatoms,
50 nb_kernel_data_t * gmx_restrict kernel_data,
51 t_nrnb * gmx_restrict nrnb)
53 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
54 * just 0 for non-waters.
55 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
56 * jnr indices corresponding to data put in the four positions in the SIMD register.
58 int i_shift_offset,i_coord_offset,outeriter,inneriter;
59 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
61 int j_coord_offsetA,j_coord_offsetB;
62 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
64 real *shiftvec,*fshift,*x,*f;
65 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
67 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
68 int vdwjidx0A,vdwjidx0B;
69 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
70 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
71 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
74 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
76 __m128d dummy_mask,cutoff_mask;
77 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
78 __m128d one = _mm_set1_pd(1.0);
79 __m128d two = _mm_set1_pd(2.0);
85 jindex = nlist->jindex;
87 shiftidx = nlist->shift;
89 shiftvec = fr->shift_vec[0];
90 fshift = fr->fshift[0];
91 facel = _mm_set1_pd(fr->epsfac);
92 charge = mdatoms->chargeA;
94 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
95 ewtab = fr->ic->tabq_coul_FDV0;
96 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
97 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
99 /* Avoid stupid compiler warnings */
107 /* Start outer loop over neighborlists */
108 for(iidx=0; iidx<nri; iidx++)
110 /* Load shift vector for this list */
111 i_shift_offset = DIM*shiftidx[iidx];
113 /* Load limits for loop over neighbors */
114 j_index_start = jindex[iidx];
115 j_index_end = jindex[iidx+1];
117 /* Get outer coordinate index */
119 i_coord_offset = DIM*inr;
121 /* Load i particle coords and add shift vector */
122 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
124 fix0 = _mm_setzero_pd();
125 fiy0 = _mm_setzero_pd();
126 fiz0 = _mm_setzero_pd();
128 /* Load parameters for i particles */
129 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
131 /* Reset potential sums */
132 velecsum = _mm_setzero_pd();
134 /* Start inner kernel loop */
135 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
138 /* Get j neighbor index, and coordinate index */
141 j_coord_offsetA = DIM*jnrA;
142 j_coord_offsetB = DIM*jnrB;
144 /* load j atom coordinates */
145 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
148 /* Calculate displacement vector */
149 dx00 = _mm_sub_pd(ix0,jx0);
150 dy00 = _mm_sub_pd(iy0,jy0);
151 dz00 = _mm_sub_pd(iz0,jz0);
153 /* Calculate squared distance and things based on it */
154 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
156 rinv00 = gmx_mm_invsqrt_pd(rsq00);
158 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
160 /* Load parameters for j particles */
161 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
163 /**************************
164 * CALCULATE INTERACTIONS *
165 **************************/
167 r00 = _mm_mul_pd(rsq00,rinv00);
169 /* Compute parameters for interactions between i and j atoms */
170 qq00 = _mm_mul_pd(iq0,jq0);
172 /* EWALD ELECTROSTATICS */
174 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
175 ewrt = _mm_mul_pd(r00,ewtabscale);
176 ewitab = _mm_cvttpd_epi32(ewrt);
177 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
178 ewitab = _mm_slli_epi32(ewitab,2);
179 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
180 ewtabD = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,1) );
181 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
182 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
183 ewtabFn = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,1) +2);
184 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
185 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
186 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
187 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
188 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
190 /* Update potential sum for this i atom from the interaction with this j atom. */
191 velecsum = _mm_add_pd(velecsum,velec);
195 /* Calculate temporary vectorial force */
196 tx = _mm_mul_pd(fscal,dx00);
197 ty = _mm_mul_pd(fscal,dy00);
198 tz = _mm_mul_pd(fscal,dz00);
200 /* Update vectorial force */
201 fix0 = _mm_add_pd(fix0,tx);
202 fiy0 = _mm_add_pd(fiy0,ty);
203 fiz0 = _mm_add_pd(fiz0,tz);
205 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,tx,ty,tz);
207 /* Inner loop uses 41 flops */
214 j_coord_offsetA = DIM*jnrA;
216 /* load j atom coordinates */
217 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
220 /* Calculate displacement vector */
221 dx00 = _mm_sub_pd(ix0,jx0);
222 dy00 = _mm_sub_pd(iy0,jy0);
223 dz00 = _mm_sub_pd(iz0,jz0);
225 /* Calculate squared distance and things based on it */
226 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
228 rinv00 = gmx_mm_invsqrt_pd(rsq00);
230 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
232 /* Load parameters for j particles */
233 jq0 = _mm_load_sd(charge+jnrA+0);
235 /**************************
236 * CALCULATE INTERACTIONS *
237 **************************/
239 r00 = _mm_mul_pd(rsq00,rinv00);
241 /* Compute parameters for interactions between i and j atoms */
242 qq00 = _mm_mul_pd(iq0,jq0);
244 /* EWALD ELECTROSTATICS */
246 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
247 ewrt = _mm_mul_pd(r00,ewtabscale);
248 ewitab = _mm_cvttpd_epi32(ewrt);
249 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
250 ewitab = _mm_slli_epi32(ewitab,2);
251 ewtabF = _mm_load_pd( ewtab + gmx_mm_extract_epi32(ewitab,0) );
252 ewtabD = _mm_setzero_pd();
253 GMX_MM_TRANSPOSE2_PD(ewtabF,ewtabD);
254 ewtabV = _mm_load_sd( ewtab + gmx_mm_extract_epi32(ewitab,0) +2);
255 ewtabFn = _mm_setzero_pd();
256 GMX_MM_TRANSPOSE2_PD(ewtabV,ewtabFn);
257 felec = _mm_add_pd(ewtabF,_mm_mul_pd(eweps,ewtabD));
258 velec = _mm_sub_pd(ewtabV,_mm_mul_pd(_mm_mul_pd(ewtabhalfspace,eweps),_mm_add_pd(ewtabF,felec)));
259 velec = _mm_mul_pd(qq00,_mm_sub_pd(rinv00,velec));
260 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
262 /* Update potential sum for this i atom from the interaction with this j atom. */
263 velec = _mm_unpacklo_pd(velec,_mm_setzero_pd());
264 velecsum = _mm_add_pd(velecsum,velec);
268 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
270 /* Calculate temporary vectorial force */
271 tx = _mm_mul_pd(fscal,dx00);
272 ty = _mm_mul_pd(fscal,dy00);
273 tz = _mm_mul_pd(fscal,dz00);
275 /* Update vectorial force */
276 fix0 = _mm_add_pd(fix0,tx);
277 fiy0 = _mm_add_pd(fiy0,ty);
278 fiz0 = _mm_add_pd(fiz0,tz);
280 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,tx,ty,tz);
282 /* Inner loop uses 41 flops */
285 /* End of innermost loop */
287 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
288 f+i_coord_offset,fshift+i_shift_offset);
291 /* Update potential energies */
292 gmx_mm_update_1pot_pd(velecsum,kernel_data->energygrp_elec+ggid);
294 /* Increment number of inner iterations */
295 inneriter += j_index_end - j_index_start;
297 /* Outer loop uses 8 flops */
300 /* Increment number of outer iterations */
303 /* Update outer/inner flops */
305 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_VF,outeriter*8 + inneriter*41);
308 * Gromacs nonbonded kernel: nb_kernel_ElecEw_VdwNone_GeomP1P1_F_sse4_1_double
309 * Electrostatics interaction: Ewald
310 * VdW interaction: None
311 * Geometry: Particle-Particle
312 * Calculate force/pot: Force
315 nb_kernel_ElecEw_VdwNone_GeomP1P1_F_sse4_1_double
316 (t_nblist * gmx_restrict nlist,
317 rvec * gmx_restrict xx,
318 rvec * gmx_restrict ff,
319 t_forcerec * gmx_restrict fr,
320 t_mdatoms * gmx_restrict mdatoms,
321 nb_kernel_data_t * gmx_restrict kernel_data,
322 t_nrnb * gmx_restrict nrnb)
324 /* Suffixes 0,1,2,3 refer to particle indices for waters in the inner or outer loop, or
325 * just 0 for non-waters.
326 * Suffixes A,B refer to j loop unrolling done with SSE double precision, e.g. for the two different
327 * jnr indices corresponding to data put in the four positions in the SIMD register.
329 int i_shift_offset,i_coord_offset,outeriter,inneriter;
330 int j_index_start,j_index_end,jidx,nri,inr,ggid,iidx;
332 int j_coord_offsetA,j_coord_offsetB;
333 int *iinr,*jindex,*jjnr,*shiftidx,*gid;
335 real *shiftvec,*fshift,*x,*f;
336 __m128d tx,ty,tz,fscal,rcutoff,rcutoff2,jidxall;
338 __m128d ix0,iy0,iz0,fix0,fiy0,fiz0,iq0,isai0;
339 int vdwjidx0A,vdwjidx0B;
340 __m128d jx0,jy0,jz0,fjx0,fjy0,fjz0,jq0,isaj0;
341 __m128d dx00,dy00,dz00,rsq00,rinv00,rinvsq00,r00,qq00,c6_00,c12_00;
342 __m128d velec,felec,velecsum,facel,crf,krf,krf2;
345 __m128d ewtabscale,eweps,sh_ewald,ewrt,ewtabhalfspace,ewtabF,ewtabFn,ewtabD,ewtabV;
347 __m128d dummy_mask,cutoff_mask;
348 __m128d signbit = gmx_mm_castsi128_pd( _mm_set_epi32(0x80000000,0x00000000,0x80000000,0x00000000) );
349 __m128d one = _mm_set1_pd(1.0);
350 __m128d two = _mm_set1_pd(2.0);
356 jindex = nlist->jindex;
358 shiftidx = nlist->shift;
360 shiftvec = fr->shift_vec[0];
361 fshift = fr->fshift[0];
362 facel = _mm_set1_pd(fr->epsfac);
363 charge = mdatoms->chargeA;
365 sh_ewald = _mm_set1_pd(fr->ic->sh_ewald);
366 ewtab = fr->ic->tabq_coul_F;
367 ewtabscale = _mm_set1_pd(fr->ic->tabq_scale);
368 ewtabhalfspace = _mm_set1_pd(0.5/fr->ic->tabq_scale);
370 /* Avoid stupid compiler warnings */
378 /* Start outer loop over neighborlists */
379 for(iidx=0; iidx<nri; iidx++)
381 /* Load shift vector for this list */
382 i_shift_offset = DIM*shiftidx[iidx];
384 /* Load limits for loop over neighbors */
385 j_index_start = jindex[iidx];
386 j_index_end = jindex[iidx+1];
388 /* Get outer coordinate index */
390 i_coord_offset = DIM*inr;
392 /* Load i particle coords and add shift vector */
393 gmx_mm_load_shift_and_1rvec_broadcast_pd(shiftvec+i_shift_offset,x+i_coord_offset,&ix0,&iy0,&iz0);
395 fix0 = _mm_setzero_pd();
396 fiy0 = _mm_setzero_pd();
397 fiz0 = _mm_setzero_pd();
399 /* Load parameters for i particles */
400 iq0 = _mm_mul_pd(facel,_mm_load1_pd(charge+inr+0));
402 /* Start inner kernel loop */
403 for(jidx=j_index_start; jidx<j_index_end-1; jidx+=2)
406 /* Get j neighbor index, and coordinate index */
409 j_coord_offsetA = DIM*jnrA;
410 j_coord_offsetB = DIM*jnrB;
412 /* load j atom coordinates */
413 gmx_mm_load_1rvec_2ptr_swizzle_pd(x+j_coord_offsetA,x+j_coord_offsetB,
416 /* Calculate displacement vector */
417 dx00 = _mm_sub_pd(ix0,jx0);
418 dy00 = _mm_sub_pd(iy0,jy0);
419 dz00 = _mm_sub_pd(iz0,jz0);
421 /* Calculate squared distance and things based on it */
422 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
424 rinv00 = gmx_mm_invsqrt_pd(rsq00);
426 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
428 /* Load parameters for j particles */
429 jq0 = gmx_mm_load_2real_swizzle_pd(charge+jnrA+0,charge+jnrB+0);
431 /**************************
432 * CALCULATE INTERACTIONS *
433 **************************/
435 r00 = _mm_mul_pd(rsq00,rinv00);
437 /* Compute parameters for interactions between i and j atoms */
438 qq00 = _mm_mul_pd(iq0,jq0);
440 /* EWALD ELECTROSTATICS */
442 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
443 ewrt = _mm_mul_pd(r00,ewtabscale);
444 ewitab = _mm_cvttpd_epi32(ewrt);
445 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
446 gmx_mm_load_2pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),ewtab+gmx_mm_extract_epi32(ewitab,1),
448 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
449 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
453 /* Calculate temporary vectorial force */
454 tx = _mm_mul_pd(fscal,dx00);
455 ty = _mm_mul_pd(fscal,dy00);
456 tz = _mm_mul_pd(fscal,dz00);
458 /* Update vectorial force */
459 fix0 = _mm_add_pd(fix0,tx);
460 fiy0 = _mm_add_pd(fiy0,ty);
461 fiz0 = _mm_add_pd(fiz0,tz);
463 gmx_mm_decrement_1rvec_2ptr_swizzle_pd(f+j_coord_offsetA,f+j_coord_offsetB,tx,ty,tz);
465 /* Inner loop uses 36 flops */
472 j_coord_offsetA = DIM*jnrA;
474 /* load j atom coordinates */
475 gmx_mm_load_1rvec_1ptr_swizzle_pd(x+j_coord_offsetA,
478 /* Calculate displacement vector */
479 dx00 = _mm_sub_pd(ix0,jx0);
480 dy00 = _mm_sub_pd(iy0,jy0);
481 dz00 = _mm_sub_pd(iz0,jz0);
483 /* Calculate squared distance and things based on it */
484 rsq00 = gmx_mm_calc_rsq_pd(dx00,dy00,dz00);
486 rinv00 = gmx_mm_invsqrt_pd(rsq00);
488 rinvsq00 = _mm_mul_pd(rinv00,rinv00);
490 /* Load parameters for j particles */
491 jq0 = _mm_load_sd(charge+jnrA+0);
493 /**************************
494 * CALCULATE INTERACTIONS *
495 **************************/
497 r00 = _mm_mul_pd(rsq00,rinv00);
499 /* Compute parameters for interactions between i and j atoms */
500 qq00 = _mm_mul_pd(iq0,jq0);
502 /* EWALD ELECTROSTATICS */
504 /* Calculate Ewald table index by multiplying r with scale and truncate to integer */
505 ewrt = _mm_mul_pd(r00,ewtabscale);
506 ewitab = _mm_cvttpd_epi32(ewrt);
507 eweps = _mm_sub_pd(ewrt,_mm_round_pd(ewrt, _MM_FROUND_FLOOR));
508 gmx_mm_load_1pair_swizzle_pd(ewtab+gmx_mm_extract_epi32(ewitab,0),&ewtabF,&ewtabFn);
509 felec = _mm_add_pd(_mm_mul_pd( _mm_sub_pd(one,eweps),ewtabF),_mm_mul_pd(eweps,ewtabFn));
510 felec = _mm_mul_pd(_mm_mul_pd(qq00,rinv00),_mm_sub_pd(rinvsq00,felec));
514 fscal = _mm_unpacklo_pd(fscal,_mm_setzero_pd());
516 /* Calculate temporary vectorial force */
517 tx = _mm_mul_pd(fscal,dx00);
518 ty = _mm_mul_pd(fscal,dy00);
519 tz = _mm_mul_pd(fscal,dz00);
521 /* Update vectorial force */
522 fix0 = _mm_add_pd(fix0,tx);
523 fiy0 = _mm_add_pd(fiy0,ty);
524 fiz0 = _mm_add_pd(fiz0,tz);
526 gmx_mm_decrement_1rvec_1ptr_swizzle_pd(f+j_coord_offsetA,tx,ty,tz);
528 /* Inner loop uses 36 flops */
531 /* End of innermost loop */
533 gmx_mm_update_iforce_1atom_swizzle_pd(fix0,fiy0,fiz0,
534 f+i_coord_offset,fshift+i_shift_offset);
536 /* Increment number of inner iterations */
537 inneriter += j_index_end - j_index_start;
539 /* Outer loop uses 7 flops */
542 /* Increment number of outer iterations */
545 /* Update outer/inner flops */
547 inc_nrnb(nrnb,eNR_NBKERNEL_ELEC_F,outeriter*7 + inneriter*36);